FvH4_6g20200

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018055
Physical Location & Seq
Reverse (-)
13813972 .. 13815491
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20200.t1

Sequence Viewer

Length: 849 bp
ATGGCTTCTGGTGCCGAAAATAATCAGCCCAGAAACCAAGAACAACCTTCCGGCCTAAGTGACCAACCTTCTGCCGTATCCAACTACCCCCCATCAGGGGGTAACAACTACCCTCCATCCGCCATGAACTACCCTCAGCAACCCTACCCACCTCAGGGCTACGCTGGCTACGGCTATAACCCTTACCCCCCTGCGGCCTACGCCCAGGACCCAGCTGTCGCCTATTACGGTACGCAGCAATATGCAAATGAAGGAGGCAACGCCTGCTTCCGTTGCATCTGCCTCATCATGCTGCTATCACTCATGTTAACCATCATCGCAAGCATCATCTTCTTCTTCGTCGCCAAACCCGATCATACTAACTTCAAGGTAGATAACTTCAGCGTCTCCAACTTCAACGTAAACACGGCAAACAAAGTCGTCACAGGACAATGGGATGCCAAGGTGGCTGTGGAAAGCGGCAGGGCGAGACTCAGAATCGACAAGGTGGAGTCGAACCTGTACCAAAAGGACACCTGGCTAGCCCCCGGGTCAGACTGGACATCGACCACCGGGTATTGGGACGACTTCAGTTGGTCGAATGCTAATACCTTGATGGAGTTCAAGTTCGACCTCAACAATGCCACGGCGCCGGCAGAGGATATGCAAAAGGAGATTAAAGATTGGGGAGGCGTGACGTTCAATTTGAGGTTGAGTTTGAATTATGTGGAGAGGTCGTCTGGGTTTTGGTGGCATATGAAAAATGGGGTCATGAAAATTACGTGCAAAGATTTGAAGATTGGTTTAGCCGTCGGTACTAATACTGGAACGCTTTCTGGTGATAAAAAGGATTGTGAAGTTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

283

Amino Acids

31.2

Weight (kDa)

5.25

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20200
malus_domestica MD14G1037700.v1.1
prunus_persica Prupe.7G096900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475721
rosa_laevigata RLG00000023821
rosa_multiflora Rmu_sc0000539.1_g000071
rosa_roxburghii Rroxscaffold_6G00405910
rosa_samantha Rh3BG231200 Rh3CG225800 Rh3DG226300
rosa_wichuraiana Rw3G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 11, 628
AciI CCGC 3 cut(s) 120, 194, 459
AcuI CTGAAG 2 cut(s) 364, 553
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 3 cut(s) 232, 503, 796
AfiI CCNNNNNNNGG 8 cut(s) 95, 96, 97, 98, 154, 155, 193, 558
AgsI TTSAA 6 cut(s) 367, 397, 604, 682, 700, 775
AjnI CCWGG 2 cut(s) 204, 515
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 391, 463
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 52, 195
ApeKI GCWGC 2 cut(s) 235, 292
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 3 cut(s) 528, 529, 553
AsuHPI GGTGA 1 cut(s) 830
AsuNHI GCTAGC 1 cut(s) 520
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 153
BanI GGYRCC 2 cut(s) 11, 628
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 247, 279
BccI CCATC 4 cut(s) 100, 124, 320, 589
BceAI ACGGC 5 cut(s) 59, 187, 423, 642, 773
BciT130I CCWGG 2 cut(s) 206, 517
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 3 cut(s) 528, 529, 553
BcoDI GTCTC 2 cut(s) 391, 463
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 632
BfuI GTATCC 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 4 cut(s) 195, 236, 293, 460
BlsI GCNGC 4 cut(s) 196, 237, 294, 461
Bme1390I CCNGG 5 cut(s) 206, 517, 528, 529, 553
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 13, 210, 630
BmrFI CCNGG 5 cut(s) 206, 517, 528, 529, 553
BmsI GCATC 3 cut(s) 285, 333, 427
BmtI GCTAGC 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 135
BpuMI CCSGG 3 cut(s) 528, 529, 553
BsaAI YACGTR 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 5 cut(s) 204, 441, 526, 527, 624
BsaXI ACNNNNNCTCC 4 cut(s) 590, 620, 701, 731
Bsc4I CCNNNNNNNGG 8 cut(s) 95, 96, 97, 98, 154, 155, 193, 558
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 3 cut(s) 542, 808, 843
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 206, 517
BseDI CCNNGG 5 cut(s) 204, 441, 526, 527, 624
BseGI GGATG 2 cut(s) 116, 442
BseLI CCNNNNNNNGG 8 cut(s) 95, 96, 97, 98, 154, 155, 193, 558
BseMII CTCAG 3 cut(s) 149, 167, 487
BseNI ACTGG 3 cut(s) 542, 808, 843
BseXI GCAGC 2 cut(s) 247, 279
BseYI CCCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 54, 197
BshNI GGYRCC 2 cut(s) 11, 628
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 4 cut(s) 51, 528, 552, 632
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 8 cut(s) 95, 96, 97, 98, 154, 155, 193, 558
BsmAI GTCTC 2 cut(s) 391, 463
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 2 cut(s) 54, 197
BsoBI CYCGRG 1 cut(s) 527
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 3 cut(s) 120, 194, 459
BspANI GGCC 2 cut(s) 54, 197
BspCNI CTCAG 3 cut(s) 148, 166, 486
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 13, 210, 630
BspOI GCTAGC 1 cut(s) 524
BspT107I GGYRCC 2 cut(s) 11, 628
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 3 cut(s) 542, 808, 843
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 5 cut(s) 204, 441, 526, 527, 624
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 206, 517
Bst4CI ACNGT 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 762
BstC8I GCNNGC 5 cut(s) 166, 265, 322, 522, 633
BstDEI CTNAG 4 cut(s) 56, 135, 153, 473
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 116, 442
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 391, 463
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 6 cut(s) 11, 165, 200, 264, 273, 446
BstNI CCWGG 2 cut(s) 206, 517
BstSCI CCNGG 5 cut(s) 204, 515, 526, 527, 551
BstV1I GCAGC 2 cut(s) 247, 279
Bsu36I CCTNAGG 1 cut(s) 153
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 54, 197
BtgI CCRYGG 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 2 cut(s) 116, 442
Cac8I GCNNGC 5 cut(s) 166, 265, 322, 522, 633
CciI TCATGA 1 cut(s) 750
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 527
CseI GACGC 1 cut(s) 373
Csp6I GTAC 3 cut(s) 231, 502, 795
CviAII CATG 4 cut(s) 124, 289, 304, 751
CviQI GTAC 3 cut(s) 231, 502, 795
DdeI CTNAG 4 cut(s) 56, 135, 153, 473
DinI GGCGCC 1 cut(s) 630
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 364, 553
Eco81I CCTNAGG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 204, 515
EcoT14I CCWWGG 1 cut(s) 441
EgeI GGCGCC 1 cut(s) 630
EheI GGCGCC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 127, 292, 307, 754
FaqI GGGAC 1 cut(s) 575
FatI CATG 4 cut(s) 123, 288, 303, 750
FauNDI CATATG 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 195, 236, 293, 460
FokI GGATG 2 cut(s) 103, 449
Fsp4HI GCNGC 4 cut(s) 195, 236, 293, 460
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 630
GluI GCNGC 4 cut(s) 195, 236, 293, 460
GsaI CCCAGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 2 cut(s) 54, 197
HapII CCGG 4 cut(s) 51, 528, 552, 632
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 631
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 4 cut(s) 127, 292, 307, 754
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 3 cut(s) 471, 477, 491
HpaI GTTAAC 1 cut(s) 309
HpaII CCGG 4 cut(s) 51, 528, 552, 632
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 2 cut(s) 309, 403
Hpy188I TCNGA 2 cut(s) 476, 535
Hpy188III TCNNGA 1 cut(s) 751
Hpy8I GTNNAC 2 cut(s) 309, 403
Hpy99I CGWCG 2 cut(s) 344, 794
HpyAV CCTTC 3 cut(s) 57, 78, 245
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 3 cut(s) 399, 677, 761
HpyCH4V TGCA 4 cut(s) 245, 276, 646, 765
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 165, 200, 264, 273, 446
HpyF3I CTNAG 4 cut(s) 56, 135, 153, 473
HpySE526I ACGT 3 cut(s) 399, 677, 761
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 4 cut(s) 127, 292, 307, 754
HspAI GCGC 1 cut(s) 629
KasI GGCGCC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 352
Lsp1109I GCAGC 2 cut(s) 247, 279
LweI GCATC 3 cut(s) 285, 333, 427
MaeI CTAG 1 cut(s) 521
MaeII ACGT 3 cut(s) 399, 677, 761
MaeIII GTNAC 4 cut(s) 59, 101, 421, 673
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 4 cut(s) 322, 325, 328, 787
MluCI AATT 3 cut(s) 682, 700, 756
Mly113I GGCGCC 1 cut(s) 629
MlyI GAGTC 2 cut(s) 465, 500
MmeI TCCRAC 2 cut(s) 105, 414
MroNI GCCGGC 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 2 cut(s) 308, 657
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 4 cut(s) 51, 528, 552, 632
MspR9I CCNGG 5 cut(s) 206, 517, 528, 529, 553
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 2 cut(s) 206, 517
MwoI GCNNNNNNNGC 6 cut(s) 11, 165, 200, 264, 273, 446
NaeI GCCGGC 1 cut(s) 633
NarI GGCGCC 1 cut(s) 629
NciI CCSGG 3 cut(s) 528, 529, 553
NdeI CATATG 1 cut(s) 735
NdeII GATC 1 cut(s) 352
NgoMIV GCCGGC 1 cut(s) 631
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 4 cut(s) 127, 292, 307, 754
NlaIV GGNNCC 3 cut(s) 13, 210, 630
NmuCI GTSAC 3 cut(s) 59, 421, 673
PagI TCATGA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 4 cut(s) 196, 237, 294, 461
PleI GAGTC 2 cut(s) 465, 499
PluTI GGCGCC 1 cut(s) 632
PpsI GAGTC 2 cut(s) 465, 499
Ppu21I YACGTR 1 cut(s) 762
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 204, 515
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 2 cut(s) 204, 515
PspN4I GGNNCC 3 cut(s) 13, 210, 630
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 3 cut(s) 232, 503, 796
RsaNI GTAC 3 cut(s) 231, 502, 795
SaqAI TTAA 2 cut(s) 308, 657
SatI GCNGC 4 cut(s) 195, 236, 293, 460
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 2 cut(s) 465, 500
ScrFI CCNGG 5 cut(s) 206, 517, 528, 529, 553
SfaNI GCATC 3 cut(s) 285, 333, 427
SfoI GGCGCC 1 cut(s) 630
SinI GGWCC 1 cut(s) 208
SmaI CCCGGG 1 cut(s) 529
Sse9I AATT 3 cut(s) 682, 700, 756
SsiI CCGC 3 cut(s) 120, 194, 459
SspDI GGCGCC 1 cut(s) 628
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 5 cut(s) 204, 515, 526, 527, 551
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 3 cut(s) 402, 680, 764
TaqI TCGA 5 cut(s) 480, 494, 545, 578, 609
TasI AATT 3 cut(s) 682, 700, 756
TauI GCSGC 2 cut(s) 197, 462
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 2 cut(s) 308, 657
Tru9I TTAA 2 cut(s) 308, 657
TseFI GTSAC 3 cut(s) 59, 421, 673
TseI GCWGC 2 cut(s) 235, 292
Tsp45I GTSAC 3 cut(s) 59, 421, 673
TspDTI ATGAA 4 cut(s) 140, 264, 752, 767
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmaI CCCGGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.