RLG00000023821

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018055
Physical Location & Seq
Forward (+)
28666908 .. 28668783
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023821

Sequence Viewer

Length: 1068 bp
ATGGCTTCTGGACCCCAAAATAATCAGCCCAGAAACCAAGAACAACATTCCGGTCAACACTCCCAAAGCGAACTACCTTCTGCCGTATCCAACTACCCCCCATCAGGGGGTAACAACTACCCTCCATCCGCAATGAACTACCCTCAGCAACCCTACCCGGGGGTCCCACCGCAGGGCTACTCGGGCTACGGCTATAACCCTTACCCCCCCGCAGCATACGCCCAAGACCCAGCCGCCGCCTATTACGCCACGCAGACATATTCACCGGCAGAGGAAGGAGCCAACCACTGCTTCCGCTGCATCTGCGTAATTATGCTGGTATCACTCATGTTTACCCTCATTGCAAGCATCATTGTCTTATTCGTCGTCAAACCCGAGCATGCCTCCTTCAAGGTAGATTCCCTCAGCGTCTCCAACTTCAACACAAACCCGGCAAACAAAGTCCTCACGGGAAAATGGGAGGCTCAAGTGAATGTGGAAAACGGTAGGACGAGACTCAATATCGAGCATGTGGAGCCCAGTCTGTACCAAAAGGATACCTGGTTGGCGCGCGGGTCGTCCGTGGGTATATCGTCCTCCGGGTATTGGGACGAGTACAATTGGGGGAGTTCTCCTAGCACGATGGAGTTCAAGTTCGAGGCCAACAATGTCTCGGCGCCGGCGGCGGATATTGAAAAGGAGATCAAAGAAACGGGGGGCGTGACGTTCAATTTGAGGTTAGATATGAAATATGTGTCGAGGTCTTCTGGGTTTTGGTGGCATTTGAAGAGTGGGAGCATGAAGGTTACGTGCAAAGATTTAAAGATTGGTTTATCGGTCGGTGCTAATAGTGGATCGCTTACTGGATTTCGAAGGCTGCAGCCACTAAACAAGAGGAGAAAAATCCCCGAGCAACAAGCCAAGGGATTGCCTTATGGCCCAGATCAATTGGATAAGTCCTTCCAATTGAGCTTTATAGTGGAGCCCAAAAAGCCTGCTCCTAGATTACCAACAGCCCATTCCCTCATCGTCAGCAACCATGAGGTCCATGACCATGCCTCCAAGCTCGAGCTAACCGAAAGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

356

Amino Acids

39.17

Weight (kDa)

8.2

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20200
malus_domestica MD14G1037700.v1.1
prunus_persica Prupe.7G096900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475721
rosa_laevigata RLG00000023821
rosa_multiflora Rmu_sc0000539.1_g000071
rosa_roxburghii Rroxscaffold_6G00405910
rosa_samantha Rh3BG231200 Rh3CG225800 Rh3DG226300
rosa_wichuraiana Rw3G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 655
AccII CGCG 2 cut(s) 550, 552
AciI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
AclWI GGATC 1 cut(s) 841
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 2 cut(s) 527, 596
AfiI CCNNNNNNNGG 9 cut(s) 104, 105, 106, 107, 158, 159, 172, 173, 585
AgsI TTSAA 6 cut(s) 391, 421, 631, 674, 709, 766
AjnI CCWGG 1 cut(s) 539
AjuI GAANNNNNNNTTGG 4 cut(s) 275, 307, 982, 1014
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 951, 1045, 1051
AluI AGCT 3 cut(s) 951, 1045, 1051
Alw26I GTCTC 3 cut(s) 415, 487, 655
AlwI GGATC 1 cut(s) 841
Ama87I CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
AoxI GGCC 2 cut(s) 639, 916
ApeKI GCWGC 4 cut(s) 212, 297, 856, 859
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspLEI GCGC 3 cut(s) 550, 552, 658
AspS9I GGNCC 4 cut(s) 11, 163, 917, 1024
AsuC2I CCSGG 4 cut(s) 158, 159, 431, 580
AsuHPI GGTGA 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 850
AvaI CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
AvaII GGWCC 3 cut(s) 11, 163, 1024
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 2 cut(s) 519, 966
BbsI GAAGAC 1 cut(s) 735
BbvCI CCTCAGC 2 cut(s) 144, 404
BbvI GCAGC 4 cut(s) 224, 284, 843, 871
BccI CCATC 3 cut(s) 109, 133, 616
BceAI ACGGC 2 cut(s) 68, 205
BciT130I CCWGG 1 cut(s) 541
BciVI GTATCC 2 cut(s) 97, 529
BcnI CCSGG 4 cut(s) 158, 159, 431, 580
BcoDI GTCTC 3 cut(s) 415, 487, 655
BfaI CTAG 2 cut(s) 615, 981
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 659
BfuI GTATCC 2 cut(s) 97, 529
BisI GCNGC 7 cut(s) 213, 234, 237, 298, 663, 857, 860
BlsI GCNGC 7 cut(s) 214, 235, 238, 299, 664, 858, 861
Bme1390I CCNGG 5 cut(s) 158, 159, 431, 541, 580
Bme18I GGWCC 3 cut(s) 11, 163, 1024
BmeT110I CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
BmgT120I GGNCC 4 cut(s) 11, 163, 917, 1024
BmiI GGNNCC 7 cut(s) 13, 164, 165, 280, 516, 657, 963
BmrFI CCNGG 5 cut(s) 158, 159, 431, 541, 580
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 309, 357
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 2 cut(s) 144, 404
Bpu14I TTCGAA 1 cut(s) 850
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 4 cut(s) 158, 159, 431, 580
BsaAI YACGTR 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 157, 158, 561, 900
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 1022, 1052
Bsc4I CCNNNNNNNGG 9 cut(s) 104, 105, 106, 107, 158, 159, 172, 173, 585
Bse118I RCCGGY 2 cut(s) 265, 658
Bse1I ACTGG 2 cut(s) 519, 847
Bse3DI GCAATG 2 cut(s) 138, 339
BseBI CCWGG 1 cut(s) 541
BseDI CCNNGG 4 cut(s) 157, 158, 561, 900
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 9 cut(s) 104, 105, 106, 107, 158, 159, 172, 173, 585
BseMI GCAATG 2 cut(s) 138, 339
BseMII CTCAG 2 cut(s) 158, 418
BseNI ACTGG 2 cut(s) 519, 847
BsePI GCGCGC 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 889
BseXI GCAGC 4 cut(s) 224, 284, 843, 871
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 550, 552
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 2 cut(s) 641, 918
BshNI GGYRCC 1 cut(s) 655
BsiEI CGRYCG 1 cut(s) 819
BsiHKCI CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
BsiSI CCGG 6 cut(s) 51, 158, 266, 431, 579, 659
BslFI GGGAC 2 cut(s) 149, 602
BslI CCNNNNNNNGG 9 cut(s) 104, 105, 106, 107, 158, 159, 172, 173, 585
BsmAI GTCTC 3 cut(s) 415, 487, 655
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 149, 602
BsnI GGCC 2 cut(s) 641, 918
BsoBI CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
Bsp119I TTCGAA 1 cut(s) 850
Bsp1286I GDGCHC 2 cut(s) 519, 966
Bsp143I GATC 3 cut(s) 681, 833, 922
BspACI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
BspANI GGCC 2 cut(s) 641, 918
BspCNI CTCAG 2 cut(s) 157, 417
BspFNI CGCG 2 cut(s) 550, 552
BspLI GGNNCC 7 cut(s) 13, 164, 165, 280, 516, 657, 963
BspMAI CTGCAG 1 cut(s) 861
BspPI GGATC 1 cut(s) 841
BspT104I TTCGAA 1 cut(s) 850
BspT107I GGYRCC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 138, 339
BsrFI RCCGGY 2 cut(s) 265, 658
BsrI ACTGG 2 cut(s) 519, 847
BssAI RCCGGY 2 cut(s) 265, 658
BssECI CCNNGG 4 cut(s) 157, 158, 561, 900
BssHII GCGCGC 1 cut(s) 548
BssMI GATC 3 cut(s) 681, 833, 922
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 656
BstBAI YACGTR 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 850
BstC8I GCNNGC 5 cut(s) 346, 381, 550, 660, 975
BstDEI CTNAG 2 cut(s) 144, 404
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 2 cut(s) 550, 552
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 3 cut(s) 550, 552, 658
BstKTI GATC 3 cut(s) 684, 836, 925
BstMAI GTCTC 3 cut(s) 415, 487, 655
BstMBI GATC 3 cut(s) 681, 833, 922
BstMCI CGRYCG 1 cut(s) 819
BstMWI GCNNNNNNNGC 8 cut(s) 183, 218, 245, 297, 303, 514, 662, 970
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 2 cut(s) 383, 512
BstSCI CCNGG 5 cut(s) 156, 157, 429, 539, 578
BstSFI CTRYAG 1 cut(s) 857
BstUI CGCG 2 cut(s) 550, 552
BstV1I GCAGC 4 cut(s) 224, 284, 843, 871
BstV2I GAAGAC 1 cut(s) 735
BsuI GTATCC 2 cut(s) 97, 529
BsuRI GGCC 2 cut(s) 641, 918
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 5 cut(s) 346, 381, 550, 660, 975
CfoI GCGC 3 cut(s) 550, 552, 658
Cfr10I RCCGGY 2 cut(s) 265, 658
Cfr13I GGNCC 4 cut(s) 11, 163, 917, 1024
Cfr9I CCCGGG 1 cut(s) 157
CseI GACGC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 539
Csp6I GTAC 2 cut(s) 526, 595
CviAII CATG 7 cut(s) 328, 380, 509, 778, 1019, 1028, 1034
CviQI GTAC 2 cut(s) 526, 595
DdeI CTNAG 2 cut(s) 144, 404
DinI GGCGCC 1 cut(s) 657
DpnI GATC 3 cut(s) 683, 835, 924
DpnII GATC 3 cut(s) 681, 833, 922
DraI TTTAAA 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
EciI GGCGGA 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 2 cut(s) 519, 966
Eco47I GGWCC 3 cut(s) 11, 163, 1024
Eco88I CYCGRG 5 cut(s) 157, 181, 374, 887, 1046
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 2 cut(s) 519, 966
EgeI GGCGCC 1 cut(s) 657
EheI GGCGCC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 900
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 7 cut(s) 331, 383, 512, 781, 1022, 1031, 1037
FaqI GGGAC 2 cut(s) 149, 602
FatI CATG 7 cut(s) 327, 379, 508, 777, 1018, 1027, 1033
FauI CCCGC 2 cut(s) 217, 545
Fnu4HI GCNGC 7 cut(s) 213, 234, 237, 298, 663, 857, 860
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 2 cut(s) 519, 966
Fsp4HI GCNGC 7 cut(s) 213, 234, 237, 298, 663, 857, 860
FspBI CTAG 2 cut(s) 615, 981
GlaI GCGC 3 cut(s) 549, 551, 657
GluI GCNGC 7 cut(s) 213, 234, 237, 298, 663, 857, 860
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 641, 918
HapII CCGG 6 cut(s) 51, 158, 266, 431, 579, 659
HgaI GACGC 1 cut(s) 397
HhaI GCGC 3 cut(s) 550, 552, 658
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 7 cut(s) 331, 383, 512, 781, 1022, 1031, 1037
Hin6I GCGC 3 cut(s) 548, 550, 656
HinP1I GCGC 3 cut(s) 548, 550, 656
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 2 cut(s) 398, 495
HpaII CCGG 6 cut(s) 51, 158, 266, 431, 579, 659
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 56, 333
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 56, 333
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 6 cut(s) 87, 269, 397, 775, 846, 949
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 2 cut(s) 704, 788
HpyCH4V TGCA 4 cut(s) 300, 344, 792, 859
HpyF10VI GCNNNNNNNGC 8 cut(s) 183, 218, 245, 297, 303, 514, 662, 970
HpyF3I CTNAG 2 cut(s) 144, 404
HpySE526I ACGT 2 cut(s) 704, 788
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 7 cut(s) 331, 383, 512, 781, 1022, 1031, 1037
HspAI GCGC 3 cut(s) 548, 550, 656
KasI GGCGCC 1 cut(s) 655
KflI GGGWCCC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 3 cut(s) 681, 833, 922
LmnI GCTCC 5 cut(s) 278, 514, 774, 961, 982
Lsp1109I GCAGC 4 cut(s) 224, 284, 843, 871
LweI GCATC 2 cut(s) 309, 357
MabI ACCWGGT 1 cut(s) 539
MaeI CTAG 2 cut(s) 615, 981
MaeII ACGT 2 cut(s) 704, 788
MaeIII GTNAC 3 cut(s) 110, 700, 784
MalI GATC 3 cut(s) 683, 835, 924
MboI GATC 3 cut(s) 681, 833, 922
MboII GAAGA 2 cut(s) 735, 778
MfeI CAATTG 3 cut(s) 598, 926, 944
MhlI GDGCHC 2 cut(s) 519, 966
MluCI AATT 5 cut(s) 309, 598, 709, 926, 944
Mly113I GGCGCC 1 cut(s) 656
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 2 cut(s) 114, 438
MreI CGCCGGCG 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 658
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 6 cut(s) 51, 158, 266, 431, 579, 659
MspR9I CCNGG 5 cut(s) 158, 159, 431, 541, 580
MunI CAATTG 3 cut(s) 598, 926, 944
MvaI CCWGG 1 cut(s) 541
MvnI CGCG 2 cut(s) 550, 552
MwoI GCNNNNNNNGC 8 cut(s) 183, 218, 245, 297, 303, 514, 662, 970
NaeI GCCGGC 1 cut(s) 660
NarI GGCGCC 1 cut(s) 656
NciI CCSGG 4 cut(s) 158, 159, 431, 580
NdeII GATC 3 cut(s) 681, 833, 922
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 7 cut(s) 331, 383, 512, 781, 1022, 1031, 1037
NlaIV GGNNCC 7 cut(s) 13, 164, 165, 280, 516, 657, 963
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 2 cut(s) 383, 512
NspV TTCGAA 1 cut(s) 850
PaeI GCATGC 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 1046
PauI GCGCGC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 1053
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 7 cut(s) 214, 235, 238, 299, 664, 858, 861
PleI GAGTC 1 cut(s) 489
PluTI GGCGCC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 489
Ppu21I YACGTR 1 cut(s) 789
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 7 cut(s) 13, 164, 165, 280, 516, 657, 963
PspPI GGNCC 4 cut(s) 11, 163, 917, 1024
PspPPI RGGWCCY 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 861
PteI GCGCGC 1 cut(s) 548
RsaI GTAC 2 cut(s) 527, 596
RsaNI GTAC 2 cut(s) 526, 595
RseI CAYNNNNRTG 1 cut(s) 1032
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 7 cut(s) 213, 234, 237, 298, 663, 857, 860
Sau3AI GATC 3 cut(s) 681, 833, 922
Sau96I GGNCC 4 cut(s) 11, 163, 917, 1024
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 5 cut(s) 158, 159, 431, 541, 580
SduI GDGCHC 2 cut(s) 519, 966
SexAI ACCWGGT 1 cut(s) 539
SfaNI GCATC 2 cut(s) 309, 357
SfcI CTRYAG 1 cut(s) 857
SfoI GGCGCC 1 cut(s) 657
Sfr274I CTCGAG 1 cut(s) 1046
SfuI TTCGAA 1 cut(s) 850
SgrAI CRCCGGYG 1 cut(s) 658
SinI GGWCC 3 cut(s) 11, 163, 1024
SlaI CTCGAG 1 cut(s) 1046
SmaI CCCGGG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 465, 1046
SmoI CTYRAG 2 cut(s) 465, 1046
SphI GCATGC 1 cut(s) 383
Sse9I AATT 5 cut(s) 309, 598, 709, 926, 944
SsiI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
SspDI GGCGCC 1 cut(s) 655
SspMI CTAG 2 cut(s) 615, 981
StyD4I CCNGG 5 cut(s) 156, 157, 429, 539, 578
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 2 cut(s) 707, 791
TaqI TCGA 5 cut(s) 504, 636, 737, 850, 1047
TaqII GACCGA 1 cut(s) 805
TasI AATT 5 cut(s) 309, 598, 709, 926, 944
TatI WGTACW 1 cut(s) 594
TauI GCSGC 3 cut(s) 236, 239, 665
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 4 cut(s) 212, 297, 856, 859
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 3 cut(s) 149, 740, 794
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 1 cut(s) 157
TspRI CASTG 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 11, 163, 1024
XceI RCATGY 2 cut(s) 383, 512
XhoI CTCGAG 1 cut(s) 1046
XmaI CCCGGG 1 cut(s) 157
XspI CTAG 2 cut(s) 615, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.