MD14G1037700.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0018055
Physical Location & Seq
Reverse (-)
3449396 .. 3450265
870 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1037700.v1.1.491

Sequence Viewer

Length: 870 bp
ATGGCTTCTACAACCCAAAGTAGTCAAGCCCACACAGCAGATCAACCTCCAACTCAATCCTCAGAGACCGATCAGCCTCGCCTCTCCACTGCCGGCCACCCCCAGCCCGGGTACCCTCAATCTACTATGAACTATGCTCAGCCTCAAAATGGGTATCCCCCACCCCTGCCCTACCATGGCTACCCTCCAAACGCCAGTTACAACCCTTATCAGGCGGACCCGAATGCGTATTACGCCACCACCTATTCTCAACACGATGAAGCCGCGAGCAGTTTTGCCCGCTGCTTCTGCATCATACTATTCCTCTTACTCACTGGGACCCTTCTGGCTAGCATCATCATGTTCGCAGTCGTCCGTCCCGAAAATGTCACCTTCAAAGTCGAGTCTTTCGGCGTTTCCAATTTCAACATGGTCCCGACAACCAAAGTAGTCTCGGGCAAATGGGAGGCCACGATGTTCGTGGAAAACCCTAGCTTTGGTCTGAGGATGCACGTGGACAAATGGGAAACTGCCTTGTACCACAAAGATAACTTTTTGTCGTCGGGAGGGTCGTTCATGCAGGACATGCGGTTGGACTCCAAGTCCAAAGGCACCATGCAGTTGAAGATGGAGATGTCCAACTCCACGGCAGGGAGCTCGTCAGTGGAGGACATGGAGAAGGAGCAGAAGGAAGGAGGGGGTGTGAGCTTCAATTTAAGGATGTCGCTCACGTACACAATGCAACATGGGTGGTGGTATAGTATAAACTATAGGGCCGGGATACTCAGGGTGAAATGTACGGATTTGAAGGTAAATCTTCCGGTGGGTGCAAGTAGTGGAAGCATGCCTGGTGGGAGCTCAAAGAAATGCGACATTACCGACGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

290

Amino Acids

31.88

Weight (kDa)

6.38

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20200
malus_domestica MD14G1037700.v1.1
prunus_persica Prupe.7G096900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475721
rosa_laevigata RLG00000023821
rosa_multiflora Rmu_sc0000539.1_g000071
rosa_roxburghii Rroxscaffold_6G00405910
rosa_samantha Rh3BG231200 Rh3CG225800 Rh3DG226300
rosa_wichuraiana Rw3G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 111
AccB1I GGYRCC 2 cut(s) 111, 590
AccII CGCG 1 cut(s) 266
AciI CCGC 4 cut(s) 215, 264, 280, 568
AcoI YGGCCR 1 cut(s) 94
AcvI CACGTG 1 cut(s) 493
AfaI GTAC 4 cut(s) 113, 518, 713, 778
AfiI CCNNNNNNNGG 8 cut(s) 107, 108, 149, 176, 211, 476, 630, 864
AgsI TTSAA 5 cut(s) 376, 406, 604, 691, 787
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 4 cut(s) 474, 636, 687, 837
AluI AGCT 4 cut(s) 474, 636, 687, 837
Alw21I GWGCWC 2 cut(s) 638, 839
Alw26I GTCTC 2 cut(s) 59, 436
Ama87I CYCGRG 2 cut(s) 107, 433
AoxI GGCC 3 cut(s) 94, 447, 753
ApeKI GCWGC 1 cut(s) 282
Asp718I GGTACC 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 217, 318, 412, 753
AsuC2I CCSGG 3 cut(s) 108, 109, 757
AsuHPI GGTGA 2 cut(s) 361, 781
AsuNHI GCTAGC 1 cut(s) 329
AvaI CYCGRG 2 cut(s) 107, 433
AvaII GGWCC 3 cut(s) 217, 318, 412
BanI GGYRCC 2 cut(s) 111, 590
BanII GRGCYC 2 cut(s) 638, 839
BbrPI CACGTG 1 cut(s) 493
Bbv12I GWGCWC 2 cut(s) 638, 839
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 642
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 2 cut(s) 165, 753
BcnI CCSGG 3 cut(s) 108, 109, 757
BcoDI GTCTC 2 cut(s) 59, 436
BfaI CTAG 2 cut(s) 330, 471
BfmI CTRYAG 1 cut(s) 748
BfuI GTATCC 2 cut(s) 165, 753
BisI GCNGC 2 cut(s) 264, 283
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 2 cut(s) 265, 284
Bme1390I CCNGG 4 cut(s) 108, 109, 757, 828
Bme18I GGWCC 3 cut(s) 217, 318, 412
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 2 cut(s) 107, 433
BmgT120I GGNCC 4 cut(s) 217, 318, 412, 753
BmiI GGNNCC 6 cut(s) 113, 219, 319, 320, 414, 592
BmrFI CCNGG 4 cut(s) 108, 109, 757, 828
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 3 cut(s) 300, 342, 477
BmtI GCTAGC 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 3 cut(s) 108, 109, 757
BsaAI YACGTR 2 cut(s) 493, 711
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 107, 175, 624
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 8 cut(s) 107, 108, 149, 176, 211, 476, 630, 864
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 195, 319
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 107, 175, 624
BseGI GGATG 2 cut(s) 492, 705
BseLI CCNNNNNNNGG 8 cut(s) 107, 108, 149, 176, 211, 476, 630, 864
BseMII CTCAG 4 cut(s) 75, 152, 473, 778
BseNI ACTGG 2 cut(s) 195, 319
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 96, 449, 755
BshNI GGYRCC 2 cut(s) 111, 590
BsiHKAI GWGCWC 2 cut(s) 638, 839
BsiHKCI CYCGRG 2 cut(s) 107, 433
BsiSI CCGG 4 cut(s) 93, 108, 756, 800
BslFI GGGAC 3 cut(s) 331, 342, 398
BslI CCNNNNNNNGG 8 cut(s) 107, 108, 149, 176, 211, 476, 630, 864
BsmAI GTCTC 2 cut(s) 59, 436
BsmFI GGGAC 3 cut(s) 331, 342, 398
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 96, 449, 755
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 2 cut(s) 107, 433
Bsp1286I GDGCHC 2 cut(s) 638, 839
Bsp143I GATC 2 cut(s) 40, 70
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 4 cut(s) 215, 264, 280, 568
BspANI GGCC 3 cut(s) 96, 449, 755
BspCNI CTCAG 4 cut(s) 74, 151, 474, 777
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 6 cut(s) 113, 219, 319, 320, 414, 592
BspOI GCTAGC 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 111, 590
BspTNI GGTCTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 195, 319
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 107, 175, 624
BssMI GATC 2 cut(s) 40, 70
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 863
BstAPI GCANNNNNTGC 1 cut(s) 565
BstBAI YACGTR 2 cut(s) 493, 711
BstC8I GCNNGC 5 cut(s) 94, 268, 280, 331, 824
BstDEI CTNAG 4 cut(s) 61, 138, 482, 764
BstDSI CCRYGG 2 cut(s) 175, 624
BstF5I GGATG 2 cut(s) 492, 705
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 2 cut(s) 43, 73
BstMAI GTCTC 2 cut(s) 59, 436
BstMBI GATC 2 cut(s) 40, 70
BstMWI GCNNNNNNNGC 4 cut(s) 35, 233, 288, 565
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 2 cut(s) 568, 826
BstSCI CCNGG 4 cut(s) 106, 107, 755, 826
BstSFI CTRYAG 1 cut(s) 748
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 269
BsuI GTATCC 2 cut(s) 165, 753
BsuRI GGCC 3 cut(s) 96, 449, 755
BtgI CCRYGG 2 cut(s) 175, 624
BtsCI GGATG 2 cut(s) 492, 705
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 87, 312, 648
Cac8I GCNNGC 5 cut(s) 94, 268, 280, 331, 824
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 217, 318, 412, 753
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 4 cut(s) 112, 517, 712, 777
CspCI CAANNNNNGTGG 2 cut(s) 710, 745
CviAII CATG 9 cut(s) 176, 340, 409, 556, 565, 595, 652, 725, 823
CviQI GTAC 4 cut(s) 112, 517, 712, 777
DdeI CTNAG 4 cut(s) 61, 138, 482, 764
DpnI GATC 2 cut(s) 42, 72
DpnII GATC 2 cut(s) 40, 70
DriI GACNNNNNGTC 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 94
Eam1105I GACNNNNNGTC 1 cut(s) 580
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 2 cut(s) 636, 837
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 638, 839
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 3 cut(s) 217, 318, 412
Eco53kI GAGCTC 2 cut(s) 636, 837
Eco72I CACGTG 1 cut(s) 493
Eco88I CYCGRG 2 cut(s) 107, 433
EcoICRI GAGCTC 2 cut(s) 636, 837
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 638, 839
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 9 cut(s) 179, 343, 412, 559, 568, 598, 655, 728, 826
FaqI GGGAC 3 cut(s) 331, 342, 398
FatI CATG 9 cut(s) 175, 339, 408, 555, 564, 594, 651, 724, 822
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 264, 283
FokI GGATG 2 cut(s) 499, 712
FriOI GRGCYC 2 cut(s) 638, 839
Fsp4HI GCNGC 2 cut(s) 264, 283
FspBI CTAG 2 cut(s) 330, 471
GluI GCNGC 2 cut(s) 264, 283
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 3 cut(s) 96, 449, 755
HapII CCGG 4 cut(s) 93, 108, 756, 800
Hin1II CATG 9 cut(s) 179, 343, 412, 559, 568, 598, 655, 728, 826
HinfI GANTC 2 cut(s) 383, 575
HpaII CCGG 4 cut(s) 93, 108, 756, 800
HphI GGTGA 2 cut(s) 361, 781
Hpy166II GTNNAC 2 cut(s) 496, 714
Hpy188I TCNGA 2 cut(s) 64, 483
Hpy188III TCNNGA 3 cut(s) 359, 415, 543
Hpy8I GTNNAC 2 cut(s) 496, 714
Hpy99I CGWCG 2 cut(s) 544, 863
HpyAV CCTTC 6 cut(s) 332, 382, 652, 661, 665, 781
HpyCH4III ACNGT 1 cut(s) 863
HpyCH4IV ACGT 2 cut(s) 492, 710
HpyCH4V TGCA 6 cut(s) 291, 490, 559, 598, 721, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 233, 288, 565
HpyF3I CTNAG 4 cut(s) 61, 138, 482, 764
HpySE526I ACGT 2 cut(s) 492, 710
Hsp92II CATG 9 cut(s) 179, 343, 412, 559, 568, 598, 655, 728, 826
KflI GGGWCCC 1 cut(s) 318
KpnI GGTACC 1 cut(s) 115
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 40, 70
LmnI GCTCC 3 cut(s) 633, 661, 834
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 3 cut(s) 300, 342, 477
MaeI CTAG 2 cut(s) 330, 471
MaeII ACGT 2 cut(s) 492, 710
MaeIII GTNAC 2 cut(s) 197, 367
MalI GATC 2 cut(s) 42, 72
MboI GATC 2 cut(s) 40, 70
MboII GAAGA 2 cut(s) 616, 788
MhlI GDGCHC 2 cut(s) 638, 839
MluCI AATT 2 cut(s) 400, 691
MlyI GAGTC 2 cut(s) 392, 569
MmeI TCCRAC 3 cut(s) 74, 552, 642
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 695
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 4 cut(s) 93, 108, 756, 800
MspR9I CCNGG 4 cut(s) 108, 109, 757, 828
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 35, 233, 288, 565
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 3 cut(s) 108, 109, 757
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 40, 70
NgoMIV GCCGGC 1 cut(s) 92
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 9 cut(s) 179, 343, 412, 559, 568, 598, 655, 728, 826
NlaIV GGNNCC 6 cut(s) 113, 219, 319, 320, 414, 592
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 568, 826
PaeI GCATGC 1 cut(s) 826
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 548
PctI GAATGC 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 265, 284
PleI GAGTC 2 cut(s) 391, 569
PmaCI CACGTG 1 cut(s) 493
PmlI CACGTG 1 cut(s) 493
PpsI GAGTC 2 cut(s) 391, 569
Ppu21I YACGTR 2 cut(s) 493, 711
PpuMI RGGWCCY 1 cut(s) 318
Psp124BI GAGCTC 2 cut(s) 638, 839
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 826
PspCI CACGTG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 6 cut(s) 113, 219, 319, 320, 414, 592
PspPI GGNCC 4 cut(s) 217, 318, 412, 753
PspPPI RGGWCCY 1 cut(s) 318
RsaI GTAC 4 cut(s) 113, 518, 713, 778
RsaNI GTAC 4 cut(s) 112, 517, 712, 777
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 2 cut(s) 638, 839
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 2 cut(s) 264, 283
Sau3AI GATC 2 cut(s) 40, 70
Sau96I GGNCC 4 cut(s) 217, 318, 412, 753
SchI GAGTC 2 cut(s) 392, 569
ScrFI CCNGG 4 cut(s) 108, 109, 757, 828
SduI GDGCHC 2 cut(s) 638, 839
SfaNI GCATC 3 cut(s) 300, 342, 477
SfcI CTRYAG 1 cut(s) 748
SinI GGWCC 3 cut(s) 217, 318, 412
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 338
SphI GCATGC 1 cut(s) 826
Sse9I AATT 2 cut(s) 400, 691
SsiI CCGC 4 cut(s) 215, 264, 280, 568
SspMI CTAG 2 cut(s) 330, 471
SstI GAGCTC 2 cut(s) 638, 839
StyD4I CCNGG 4 cut(s) 106, 107, 755, 826
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 863
TaiI ACGT 2 cut(s) 495, 713
TaqI TCGA 1 cut(s) 381
TaqII GACCGA 1 cut(s) 83
TasI AATT 2 cut(s) 400, 691
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 3 cut(s) 94, 319, 648
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 143, 273, 544
TspGWI ACGGA 2 cut(s) 344, 794
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 3 cut(s) 94, 319, 648
VpaK11BI GGWCC 3 cut(s) 217, 318, 412
XceI RCATGY 2 cut(s) 568, 826
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 457
XmaI CCCGGG 1 cut(s) 107
XspI CTAG 2 cut(s) 330, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.