Prupe.7G096900_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0018055
Physical Location & Seq
Forward (+)
12849282 .. 12850753
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G096900.1

Sequence Viewer

Length: 876 bp
ATGGCTTCCACAACCGAAACTAATCAACCCCGCTCCTCCGACCAACCCGCAACACAATCATCAGAAGCCCACCAACCTCGAGCCCCCATTGACCCCTACCCCCCGCCCGCCGGGGGCACCTATCCGCCATCCAACATGAGCTACGCGCACCCACAAGGATACCCCACCGTAGCGCCCCCCTACCACGGGTACCACCCGAGCGCCTACAACCCTTATTACGGGGACCCCTACTACACCACCACCTCCTACAACCAAGCTGACGAGGCCGCCAGCAGCTGCTTCCGGTGCTTCTGCATCATCATGTTCCTCCTCGTCATCTTCACCCTCCTTGCCAGCATCGTCATGTTTGTCGTGGTCCGCCCGGAAACCCCGGCCTTCAAGGTCGAGTCCTTTAGCGTCTCCAACTTCAACCTCGTCCCAGGGAGCAAAGTGCTCTCCGGGAAATGGGAGGCCTCCATCTACGTGGACAACCCCAGCTACAGGATGAAGTTGGAGATAGACAGGTGGGAGACCTCCCTGTACCACAAGGACAACTATCTCGCGATGGGCTCCGTCATGCACTCCATGAATCTCGAATCTCGGTCAAAAGGCACGATGCACATGAAGATGGAGACGTACAATACAACGGCGAGCAGCGCGGTAGAGGACATGGAGAAGGAGCAGAAGGAGGGCGGGAACGTGAGCTTCAATTTGAGGTTGACGCTTTCGTACGACATGAAAGCCAGTGGTTTTTTGTATAATCACTATAGTAACTACAGAAGTGGGACCCTCCGGGTGAAATGCTCGGATTTGAAGGTGCCGCTGCCGGCGGGGTCAAATACTGGCAGCATGCCCAGTGGGAGCTCGAAGGCATGCGATATCTCCGATGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

292

Amino Acids

32.28

Weight (kDa)

6.24

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20200
malus_domestica MD14G1037700.v1.1
prunus_persica Prupe.7G096900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475721
rosa_laevigata RLG00000023821
rosa_multiflora Rmu_sc0000539.1_g000071
rosa_roxburghii Rroxscaffold_6G00405910
rosa_samantha Rh3BG231200 Rh3CG225800 Rh3DG226300
rosa_wichuraiana Rw3G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 3 cut(s) 116, 189, 796
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 3 cut(s) 146, 542, 638
AfaI GTAC 4 cut(s) 191, 521, 617, 710
AfiI CCNNNNNNNGG 7 cut(s) 110, 113, 185, 186, 218, 444, 480
AgsI TTSAA 4 cut(s) 379, 409, 688, 793
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 6 cut(s) 141, 257, 276, 477, 684, 843
AluI AGCT 6 cut(s) 141, 257, 276, 477, 684, 843
Alw21I GWGCWC 2 cut(s) 435, 845
Alw26I GTCTC 3 cut(s) 403, 503, 605
AlwNI CAGNNNCTG 1 cut(s) 276
Ama87I CYCGRG 2 cut(s) 78, 196
AoxI GGCC 3 cut(s) 264, 372, 450
ApeKI GCWGC 5 cut(s) 273, 276, 633, 802, 825
Asp718I GGTACC 1 cut(s) 189
AspLEI GCGC 4 cut(s) 148, 175, 203, 638
AspS9I GGNCC 3 cut(s) 223, 355, 765
AsuC2I CCSGG 5 cut(s) 112, 362, 371, 439, 773
AsuHPI GGTGA 2 cut(s) 313, 787
AvaI CYCGRG 2 cut(s) 78, 196
AvaII GGWCC 3 cut(s) 223, 355, 765
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 3 cut(s) 116, 189, 796
BanII GRGCYC 3 cut(s) 85, 551, 845
Bbv12I GWGCWC 2 cut(s) 435, 845
BbvI GCAGC 5 cut(s) 263, 285, 645, 789, 837
BccI CCATC 5 cut(s) 136, 464, 538, 601, 860
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 5 cut(s) 112, 362, 371, 439, 773
BcoDI GTCTC 3 cut(s) 403, 503, 605
BfmI CTRYAG 3 cut(s) 478, 745, 754
BfoI RGCGCY 2 cut(s) 176, 204
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 7 cut(s) 267, 274, 277, 634, 800, 803, 826
BlsI GCNGC 7 cut(s) 268, 275, 278, 635, 801, 804, 827
Bme1390I CCNGG 6 cut(s) 112, 362, 371, 420, 439, 773
Bme18I GGWCC 3 cut(s) 223, 355, 765
BmeT110I CYCGRG 2 cut(s) 78, 196
BmgT120I GGNCC 3 cut(s) 223, 355, 765
BmiI GGNNCC 8 cut(s) 118, 191, 224, 225, 550, 766, 767, 798
BmrFI CCNGG 6 cut(s) 112, 362, 371, 420, 439, 773
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 3 cut(s) 303, 345, 585
BmuI ACTGGG 1 cut(s) 828
BpuMI CCSGG 5 cut(s) 112, 362, 371, 439, 773
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 5 cut(s) 111, 184, 369, 418, 419
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 7 cut(s) 110, 113, 185, 186, 218, 444, 480
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 3 cut(s) 723, 826, 834
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 5 cut(s) 111, 184, 369, 418, 419
BseGI GGATG 2 cut(s) 128, 489
BseLI CCNNNNNNNGG 7 cut(s) 110, 113, 185, 186, 218, 444, 480
BseNI ACTGG 3 cut(s) 723, 826, 834
BseRI GAGGAG 2 cut(s) 25, 299
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 5 cut(s) 263, 285, 645, 789, 837
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 3 cut(s) 146, 542, 638
BshFI GGCC 3 cut(s) 266, 374, 452
BshNI GGYRCC 3 cut(s) 116, 189, 796
BsiHKAI GWGCWC 2 cut(s) 435, 845
BsiHKCI CYCGRG 2 cut(s) 78, 196
BsiSI CCGG 7 cut(s) 111, 283, 362, 371, 438, 772, 806
BsiWI CGTACG 1 cut(s) 708
BslFI GGGAC 3 cut(s) 236, 401, 778
BslI CCNNNNNNNGG 7 cut(s) 110, 113, 185, 186, 218, 444, 480
BsmAI GTCTC 3 cut(s) 403, 503, 605
BsmBI CGTCTC 2 cut(s) 403, 605
BsmFI GGGAC 3 cut(s) 236, 401, 778
BsnI GGCC 3 cut(s) 266, 374, 452
Bso31I GGTCTC 1 cut(s) 503
BsoBI CYCGRG 2 cut(s) 78, 196
Bsp1286I GDGCHC 5 cut(s) 85, 119, 435, 551, 845
Bsp68I TCGCGA 1 cut(s) 542
BspANI GGCC 3 cut(s) 266, 374, 452
BspFNI CGCG 3 cut(s) 146, 542, 638
BspLI GGNNCC 8 cut(s) 118, 191, 224, 225, 550, 766, 767, 798
BspT107I GGYRCC 3 cut(s) 116, 189, 796
BspTNI GGTCTC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 3 cut(s) 723, 826, 834
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 5 cut(s) 111, 184, 369, 418, 419
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 7 cut(s) 108, 271, 334, 631, 807, 830, 853
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 128, 489
BstFNI CGCG 3 cut(s) 146, 542, 638
BstH2I RGCGCY 2 cut(s) 176, 204
BstHHI GCGC 4 cut(s) 148, 175, 203, 638
BstMAI GTCTC 3 cut(s) 403, 503, 605
BstMWI GCNNNNNNNGC 3 cut(s) 263, 285, 635
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 832, 855
BstSCI CCNGG 6 cut(s) 110, 360, 369, 418, 437, 771
BstSFI CTRYAG 3 cut(s) 478, 745, 754
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 3 cut(s) 146, 542, 638
BstV1I GCAGC 5 cut(s) 263, 285, 645, 789, 837
BstXI CCANNNNNNTGG 1 cut(s) 463
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 3 cut(s) 266, 374, 452
BtgI CCRYGG 1 cut(s) 184
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 128, 489
BtsIMutI CAGTG 2 cut(s) 730, 841
BtuMI TCGCGA 1 cut(s) 542
Cac8I GCNNGC 7 cut(s) 108, 271, 334, 631, 807, 830, 853
CaiI CAGNNNCTG 1 cut(s) 276
CfoI GCGC 4 cut(s) 148, 175, 203, 638
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 223, 355, 765
CseI GACGC 2 cut(s) 385, 709
Csp6I GTAC 4 cut(s) 190, 520, 616, 709
CviQI GTAC 4 cut(s) 190, 520, 616, 709
EciI GGCGGA 2 cut(s) 114, 347
Ecl136II GAGCTC 1 cut(s) 843
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 3 cut(s) 85, 551, 845
Eco31I GGTCTC 1 cut(s) 503
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 3 cut(s) 223, 355, 765
Eco53kI GAGCTC 1 cut(s) 843
Eco88I CYCGRG 2 cut(s) 78, 196
EcoICRI GAGCTC 1 cut(s) 843
EcoO109I RGGNCCY 2 cut(s) 223, 765
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 859
EcoT38I GRGCYC 3 cut(s) 85, 551, 845
Esp3I CGTCTC 2 cut(s) 403, 605
FaqI GGGAC 3 cut(s) 236, 401, 778
FauI CCCGC 6 cut(s) 38, 55, 111, 115, 665, 802
Fnu4HI GCNGC 7 cut(s) 267, 274, 277, 634, 800, 803, 826
FokI GGATG 2 cut(s) 115, 496
FriOI GRGCYC 3 cut(s) 85, 551, 845
Fsp4HI GCNGC 7 cut(s) 267, 274, 277, 634, 800, 803, 826
GlaI GCGC 4 cut(s) 147, 174, 202, 637
GluI GCNGC 7 cut(s) 267, 274, 277, 634, 800, 803, 826
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 2 cut(s) 176, 204
HaeIII GGCC 3 cut(s) 266, 374, 452
HapII CCGG 7 cut(s) 111, 283, 362, 371, 438, 772, 806
HgaI GACGC 2 cut(s) 385, 709
HhaI GCGC 4 cut(s) 148, 175, 203, 638
Hin6I GCGC 4 cut(s) 146, 173, 201, 636
HinP1I GCGC 4 cut(s) 146, 173, 201, 636
HincII GTYRAC 1 cut(s) 699
HindII GTYRAC 1 cut(s) 699
HinfI GANTC 3 cut(s) 386, 568, 575
HpaII CCGG 7 cut(s) 111, 283, 362, 371, 438, 772, 806
HphI GGTGA 2 cut(s) 313, 787
Hpy166II GTNNAC 2 cut(s) 466, 699
Hpy188I TCNGA 5 cut(s) 40, 64, 787, 865, 875
Hpy188III TCNNGA 2 cut(s) 541, 572
Hpy8I GTNNAC 2 cut(s) 466, 699
HpyAV CCTTC 5 cut(s) 385, 649, 658, 787, 841
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 3 cut(s) 462, 614, 678
HpyCH4V TGCA 3 cut(s) 294, 559, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 285, 635
HpySE526I ACGT 3 cut(s) 462, 614, 678
HspAI GCGC 4 cut(s) 146, 173, 201, 636
KflI GGGWCCC 2 cut(s) 223, 765
KpnI GGTACC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 805
KroNI GCCGGC 1 cut(s) 807
LmnI GCTCC 5 cut(s) 38, 423, 554, 658, 840
Lsp1109I GCAGC 5 cut(s) 263, 285, 645, 789, 837
LweI GCATC 3 cut(s) 303, 345, 585
MaeII ACGT 3 cut(s) 462, 614, 678
MaeIII GTNAC 1 cut(s) 749
MbiI CCGCTC 1 cut(s) 33
MboII GAAGA 2 cut(s) 310, 616
MhlI GDGCHC 5 cut(s) 85, 119, 435, 551, 845
MluCI AATT 1 cut(s) 688
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 4 cut(s) 63, 156, 426, 471
MroNI GCCGGC 1 cut(s) 805
MslI CAYNNNNRTG 4 cut(s) 299, 341, 461, 605
MspA1I CMGCKG 2 cut(s) 276, 802
MspI CCGG 7 cut(s) 111, 283, 362, 371, 438, 772, 806
MspR9I CCNGG 6 cut(s) 112, 362, 371, 420, 439, 773
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 3 cut(s) 146, 542, 638
MwoI GCNNNNNNNGC 3 cut(s) 263, 285, 635
NaeI GCCGGC 1 cut(s) 807
NciI CCSGG 5 cut(s) 112, 362, 371, 439, 773
NgoMIV GCCGGC 1 cut(s) 805
NlaIV GGNNCC 8 cut(s) 118, 191, 224, 225, 550, 766, 767, 798
NruI TCGCGA 1 cut(s) 542
NspI RCATGY 2 cut(s) 832, 855
PaeI GCATGC 2 cut(s) 832, 855
PaeR7I CTCGAG 1 cut(s) 78
PasI CCCWGGG 1 cut(s) 419
PceI AGGCCT 1 cut(s) 452
PdiI GCCGGC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 568, 575
Pfl23II CGTACG 1 cut(s) 708
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 7 cut(s) 268, 275, 278, 635, 801, 804, 827
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 463
PpuMI RGGWCCY 2 cut(s) 223, 765
Psp124BI GAGCTC 1 cut(s) 845
Psp5II RGGWCCY 2 cut(s) 223, 765
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 418
PspLI CGTACG 1 cut(s) 708
PspN4I GGNNCC 8 cut(s) 118, 191, 224, 225, 550, 766, 767, 798
PspPI GGNCC 3 cut(s) 223, 355, 765
PspPPI RGGWCCY 2 cut(s) 223, 765
PspXI VCTCGAGB 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 276
RruI TCGCGA 1 cut(s) 542
RsaI GTAC 4 cut(s) 191, 521, 617, 710
RsaNI GTAC 4 cut(s) 190, 520, 616, 709
RseI CAYNNNNRTG 4 cut(s) 299, 341, 461, 605
SacI GAGCTC 1 cut(s) 845
SatI GCNGC 7 cut(s) 267, 274, 277, 634, 800, 803, 826
Sau96I GGNCC 3 cut(s) 223, 355, 765
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 6 cut(s) 112, 362, 371, 420, 439, 773
SduI GDGCHC 5 cut(s) 85, 119, 435, 551, 845
SfaNI GCATC 3 cut(s) 303, 345, 585
SfcI CTRYAG 3 cut(s) 478, 745, 754
Sfr274I CTCGAG 1 cut(s) 78
SinI GGWCC 3 cut(s) 223, 355, 765
SlaI CTCGAG 1 cut(s) 78
SmiMI CAYNNNNRTG 4 cut(s) 299, 341, 461, 605
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SphI GCATGC 2 cut(s) 832, 855
Sse9I AATT 1 cut(s) 688
SseBI AGGCCT 1 cut(s) 452
SstI GAGCTC 1 cut(s) 845
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 6 cut(s) 110, 360, 369, 418, 437, 771
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 3 cut(s) 465, 617, 681
TaqI TCGA 4 cut(s) 79, 384, 573, 845
TaqII GACCGA 1 cut(s) 570
TasI AATT 1 cut(s) 688
TauI GCSGC 2 cut(s) 269, 802
TfiI GAWTC 2 cut(s) 568, 575
TscAI CASTG 2 cut(s) 730, 841
TseI GCWGC 5 cut(s) 273, 276, 633, 802, 825
TspDTI ATGAA 4 cut(s) 500, 581, 617, 731
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 2 cut(s) 730, 841
VpaK11BI GGWCC 3 cut(s) 223, 355, 765
XceI RCATGY 2 cut(s) 832, 855
XhoI CTCGAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.