Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017334

Physical Location & Seq

Genomic Coordinates Reverse (-)

13831183 .. 13832378

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTGCTTCATGGTGCAAAGATTCCCCAATACTCAACAAGATCCGTGGATGTATCTTGCTTGTTGTGATAGTAGTGACTCTTGTTATAGCCATCGGGTTCACCCTTTGGTTCATAGGCAGCTATGTTGATTCAAAGTCCGGTCCGCAGACACAACCTCTTGTGCTGCGTTTGGATGTATTCTCTTTATCAAATTTTGAGGTTTCCAATTCATCGTTATCTGCCGAATGGGATGCCAAAATGACATTTGGGAACCAAAACAGTGGCCTAACTGTTACCATCTATCCTTTCGAGAGTTTCGTGTACTACAAAGAAGGTGAAGACGCTTTGTCGTGTGCTTTAGTGGATGCAATGCATATTCCTCCGAGAAAACAGAAGACAGTGCAGATCAAGTTTGATTCTACAGGCTGTGGAGGGGAGCAGCCATTTATCGAGGATCGTGTGCTGAAGGAGCTAAGTGAAGACCGAAAAAGTGGTTACCTGAATTTCAGTTTGAAGATGAATATAGATGCTTCGTATAGTATGAGGGAGTTGTTGGGAATGGGAACACAAGTGAGTTTAAATCCTAATTGTACAAATTTGAAGATTGAGTTAGCGGCTGCCAAAGGTGAGGGGAAGATAACTGGGGGAAGGAAGTGTTCGGTTCCATTGCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.03

Weight (kDa)

6.59

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017334)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20210
malus_domestica	MD12G1039000.v1.1
prunus_persica	Prupe.7G096800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475751
rosa_laevigata	RLG00000023819
rosa_multiflora	Rmu_sc0000539.1_g000074
rosa_roxburghii	Rroxscaffold_6G00405890
rosa_rugosa	Rorug03G0151200
rosa_samantha	Rh3AG200900 Rh3BG231300 Rh3CG226000 Rh3DG226500
rosa_wichuraiana	Rw3G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 596
AclWI	GGATC	2 cut(s)	37, 444
AcsI	RAATTY	3 cut(s)	193, 484, 577
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	305, 574
AgsI	TTSAA	3 cut(s)	135, 496, 583
AhdI	GACNNNNNGTC	1 cut(s)	328
AluBI	AGCT	2 cut(s)	123, 454
AluI	AGCT	2 cut(s)	123, 454
AlwI	GGATC	2 cut(s)	37, 444
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	5 cut(s)	5, 120, 166, 421, 599
ApoI	RAATTY	3 cut(s)	193, 484, 577
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	94, 329, 620
AvaII	GGWCC	1 cut(s)	143
BbsI	GAAGAC	3 cut(s)	327, 383, 468
BbvI	GCAGC	4 cut(s)	132, 153, 433, 586
BccI	CCATC	2 cut(s)	101, 287
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	6 cut(s)	6, 121, 167, 422, 597, 600
BlsI	GCNGC	6 cut(s)	7, 122, 168, 423, 598, 601
Bme18I	GGWCC	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	254, 645
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	223, 337, 499
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	3 cut(s)	327, 383, 468
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	2 cut(s)	357, 647
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	4 cut(s)	56, 181, 238, 352
BseMI	GCAATG	2 cut(s)	357, 647
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	4 cut(s)	132, 153, 433, 586
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	42, 387, 436
BspACI	CCGC	2 cut(s)	146, 596
BspANI	GGCC	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	254, 645
BspPI	GGATC	2 cut(s)	37, 444
BsrDI	GCAATG	2 cut(s)	357, 647
BsrGI	TGTACA	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	42, 387, 436
Bst4CI	ACNGT	3 cut(s)	263, 274, 382
BstAUI	TGTACA	1 cut(s)	572
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	476
BstF5I	GGATG	4 cut(s)	56, 181, 238, 352
BstKTI	GATC	3 cut(s)	45, 390, 439
BstMBI	GATC	3 cut(s)	42, 387, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	132, 153, 433, 586
BstV2I	GAAGAC	3 cut(s)	327, 383, 468
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	56, 181, 238, 352
BtsIMutI	CAGTG	2 cut(s)	268, 387
Cfr13I	GGNCC	1 cut(s)	143
CpoI	CGGWCCG	1 cut(s)	143
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	304, 573
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CspI	CGGWCCG	1 cut(s)	143
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	8 cut(s)	5, 92, 123, 267, 408, 424, 454, 599
CviKI_1	RGCY	8 cut(s)	5, 92, 123, 267, 408, 424, 454, 599
CviQI	GTAC	2 cut(s)	304, 573
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	3 cut(s)	44, 389, 438
DpnII	GATC	3 cut(s)	42, 387, 436
DraI	TTTAAA	1 cut(s)	561
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1105I	GACNNNNNGTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	476
EcoO65I	GGTNACC	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	357
FaeI	CATG	1 cut(s)	15
FaiI	YATR	8 cut(s)	13, 89, 116, 126, 357, 506, 519, 524
FatI	CATG	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	6, 121, 167, 422, 597, 600
FokI	GGATG	4 cut(s)	63, 188, 245, 359
Fsp4HI	GCNGC	6 cut(s)	6, 121, 167, 422, 597, 600
GluI	GCNGC	6 cut(s)	6, 121, 167, 422, 597, 600
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	15
HinfI	GANTC	4 cut(s)	23, 79, 131, 398
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	94, 329, 620
Hpy166II	GTNNAC	2 cut(s)	102, 304
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	102, 304
HpyAV	CCTTC	3 cut(s)	308, 442, 624
HpyCH4III	ACNGT	3 cut(s)	263, 274, 382
HpyCH4V	TGCA	4 cut(s)	18, 350, 355, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	42, 387, 436
LmnI	GCTCC	2 cut(s)	418, 451
LpnPI	CCDG	4 cut(s)	154, 390, 494, 609
Lsp1109I	GCAGC	4 cut(s)	132, 153, 433, 586
LweI	GCATC	3 cut(s)	223, 337, 499
MaeIII	GTNAC	3 cut(s)	76, 274, 476
MalI	GATC	3 cut(s)	44, 389, 438
MboI	GATC	3 cut(s)	42, 387, 436
MboII	GAAGA	6 cut(s)	332, 388, 473, 508, 595, 628
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	6 cut(s)	193, 208, 484, 568, 577, 655
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	168, 193, 372, 407, 427, 519, 604
Mph1103I	ATGCAT	1 cut(s)	357
MseI	TTAA	1 cut(s)	560
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	3 cut(s)	42, 387, 436
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	254, 645
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	23, 131, 398
PkrI	GCNGC	6 cut(s)	7, 122, 168, 423, 598, 601
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspEI	GGTNACC	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	254, 645
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	305, 574
RsaNI	GTAC	2 cut(s)	304, 573
Rsr2I	CGGWCCG	1 cut(s)	143
RsrII	CGGWCCG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	6 cut(s)	6, 121, 167, 422, 597, 600
Sau3AI	GATC	3 cut(s)	42, 387, 436
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	73
SetI	ASST	7 cut(s)	125, 160, 204, 319, 456, 483, 610
SfaNI	GCATC	3 cut(s)	223, 337, 499
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	6 cut(s)	193, 208, 484, 568, 577, 655
SsiI	CCGC	2 cut(s)	146, 596
TaaI	ACNGT	3 cut(s)	263, 274, 382
TaqI	TCGA	2 cut(s)	291, 432
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	6 cut(s)	193, 208, 484, 568, 577, 655
TatI	WGTACW	2 cut(s)	303, 572
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	23, 131, 398
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	268, 387
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	5 cut(s)	5, 120, 166, 421, 599
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	103, 201, 515
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	268, 387
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	3 cut(s)	193, 484, 577
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.