RLG00000023819

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017334
Physical Location & Seq
Forward (+)
28655908 .. 28658315
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023819

Sequence Viewer

Length: 795 bp
ATGAGTCAAGGTCAACAGAGTAATCAAGGTGAAGATCTGCTCCAGCCCTCTTCAGATGATACACGTGTCAACCATCAGAAGGAGACACAGGAGAATGAAAATTCTTGCGTTCGGTTCCTTCAGCGAGATTTATTTATGGCTACTTCATGGTGCAAAGATTCCCCAATACTCAACAAAGTTCGTGGATGCATCTTGCTTGTTGTGATAGTAGTGACTCTTGCGACTGCCATTGGATTTACTCTTTGGTTCATAGGCAGCTATGTAGATTCAAAGTCCGGTCCGCAGACACAACCCCTTGTGCTTCGTTTGGATGCATTTTCTTTATCAAATTTCGAGGTTACCAATTCATCGTTTTCTGCCGGTTGGGATGCCAAAATGACATTTGGGAACCAAAATAATGGCCTAACTGTTACCCTCTACCCTTTTGAGAGTTTTGTGTATTACAAAGAAGGTGAAGACGCTCTGTCATGTGCTTTAGTGGATGCAATGCATATTCCTCCGAGAAAACAGAAGACAGTGCAGATCAAATTTGATTCCACAGGCTGTGGAGGGGACCAGCCATTTATCGAGGATCATGTGCTGAAGGAGTTAAGCGAAGATCGAAAGAGTGGTAACTTGAATTTCAGTATGAAGATGCATATCGATGCGTCGTATAGCATGAGGGAGCTATTGGGAATGGGAACACAAGTGAGTTTAAATCCAAATTGTACAAATTTGAAGGTTGAGTTTGCCGCTGCCAAAGGTGAGGGAAAGATATTTGGGGGAAGGAAGTGCTCTGTTCCATTGCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.23

Weight (kDa)

5.63

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017334)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20210
malus_domestica MD12G1039000.v1.1
prunus_persica Prupe.7G096800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475751
rosa_laevigata RLG00000023819
rosa_multiflora Rmu_sc0000539.1_g000074
rosa_roxburghii Rroxscaffold_6G00405890
rosa_rugosa Rorug03G0151200
rosa_samantha Rh3AG200900 Rh3BG231300 Rh3CG226000 Rh3DG226500
rosa_wichuraiana Rw3G018280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 281, 732
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 5 cut(s) 100, 328, 527, 619, 712
AcuI CTGAAG 3 cut(s) 36, 104, 602
AcvI CACGTG 1 cut(s) 65
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 62, 64
AgsI TTSAA 3 cut(s) 270, 619, 718
AhdI GACNNNNNGTC 1 cut(s) 463
AluBI AGCT 2 cut(s) 258, 667
AluI AGCT 2 cut(s) 258, 667
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 579
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 2 cut(s) 255, 734
ApoI RAATTY 5 cut(s) 100, 328, 527, 619, 712
AspS9I GGNCC 2 cut(s) 278, 553
AsuHPI GGTGA 3 cut(s) 41, 464, 755
AvaII GGWCC 2 cut(s) 278, 553
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BbrPI CACGTG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 462, 518
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 2 cut(s) 267, 721
BccI CCATC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 77
BglII AGATCT 1 cut(s) 34
BisI GCNGC 3 cut(s) 256, 732, 735
BlsI GCNGC 3 cut(s) 257, 733, 736
Bme18I GGWCC 2 cut(s) 278, 553
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 278, 553
BmiI GGNNCC 3 cut(s) 116, 389, 554
BmsI GCATC 7 cut(s) 176, 198, 301, 358, 472, 624, 634
BpiI GAAGAC 2 cut(s) 462, 518
BpmI CTGGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 638
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 2 cut(s) 492, 782
Bse8I GATNNNNATC 1 cut(s) 638
BseCI ATCGAT 1 cut(s) 642
BseGI GGATG 4 cut(s) 191, 316, 373, 487
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 492, 782
BseXI GCAGC 2 cut(s) 267, 721
BsgI GTGCAG 1 cut(s) 539
BshFI GGCC 1 cut(s) 402
BshVI ATCGAT 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 776
BsiSI CCGG 2 cut(s) 276, 360
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 776
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 34, 522, 571, 598
BspACI CCGC 2 cut(s) 281, 732
BspANI GGCC 1 cut(s) 402
BspDI ATCGAT 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 116, 389, 554
BspPI GGATC 1 cut(s) 579
BsrDI GCAATG 2 cut(s) 492, 782
BsrFI RCCGGY 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 359
BssMI GATC 4 cut(s) 34, 522, 571, 598
Bst4CI ACNGT 2 cut(s) 409, 517
Bst6I CTCTTC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 65
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 4 cut(s) 191, 316, 373, 487
BstKTI GATC 4 cut(s) 37, 525, 574, 601
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 4 cut(s) 34, 522, 571, 598
BstPI GGTNACC 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 267, 721
BstV2I GAAGAC 2 cut(s) 462, 518
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 642
BsuRI GGCC 1 cut(s) 402
BsuTUI ATCGAT 1 cut(s) 642
BtsCI GGATG 4 cut(s) 191, 316, 373, 487
BtsIMutI CAGTG 1 cut(s) 522
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 278, 553
ClaI ATCGAT 1 cut(s) 642
CpoI CGGWCCG 1 cut(s) 278
CseI GACGC 2 cut(s) 467, 636
Csp6I GTAC 1 cut(s) 708
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CspI CGGWCCG 1 cut(s) 278
CviAII CATG 4 cut(s) 147, 468, 575, 658
CviJI RGCY 7 cut(s) 46, 140, 258, 402, 543, 559, 667
CviKI_1 RGCY 7 cut(s) 46, 140, 258, 402, 543, 559, 667
CviQI GTAC 1 cut(s) 708
DpnI GATC 4 cut(s) 36, 524, 573, 600
DpnII GATC 4 cut(s) 34, 522, 571, 598
DraI TTTAAA 1 cut(s) 696
DriI GACNNNNNGTC 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 55
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 278, 553
Eco57I CTGAAG 3 cut(s) 36, 104, 602
Eco72I CACGTG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
EcoT22I ATGCAT 4 cut(s) 191, 316, 492, 639
FaeI CATG 4 cut(s) 150, 471, 578, 661
FaqI GGGAC 1 cut(s) 566
FatI CATG 4 cut(s) 146, 467, 574, 657
Fnu4HI GCNGC 3 cut(s) 256, 732, 735
FokI GGATG 4 cut(s) 198, 323, 380, 494
Fsp4HI GCNGC 3 cut(s) 256, 732, 735
GluI GCNGC 3 cut(s) 256, 732, 735
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 402
HapII CCGG 2 cut(s) 276, 360
HgaI GACGC 2 cut(s) 467, 636
Hin1II CATG 4 cut(s) 150, 471, 578, 661
HincII GTYRAC 2 cut(s) 14, 70
HindII GTYRAC 2 cut(s) 14, 70
HinfI GANTC 5 cut(s) 4, 158, 214, 266, 533
HpaII CCGG 2 cut(s) 276, 360
HphI GGTGA 3 cut(s) 41, 464, 755
Hpy166II GTNNAC 2 cut(s) 14, 70
Hpy188I TCNGA 3 cut(s) 55, 78, 501
Hpy8I GTNNAC 2 cut(s) 14, 70
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 6 cut(s) 73, 128, 443, 577, 712, 759
HpyCH4III ACNGT 2 cut(s) 409, 517
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 7 cut(s) 153, 189, 314, 485, 490, 520, 637
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 4 cut(s) 150, 471, 578, 661
Kzo9I GATC 4 cut(s) 34, 522, 571, 598
LmnI GCTCC 2 cut(s) 45, 664
LpnPI CCDG 6 cut(s) 56, 74, 289, 373, 525, 569
Lsp1109I GCAGC 2 cut(s) 267, 721
LweI GCATC 7 cut(s) 176, 198, 301, 358, 472, 624, 634
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 4 cut(s) 211, 337, 409, 611
MalI GATC 4 cut(s) 36, 524, 573, 600
MboI GATC 4 cut(s) 34, 522, 571, 598
MboII GAAGA 6 cut(s) 42, 44, 467, 523, 608, 643
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 8 cut(s) 100, 328, 343, 527, 619, 703, 712, 790
MlyI GAGTC 2 cut(s) 13, 208
MnlI CCTC 8 cut(s) 58, 328, 425, 507, 542, 562, 654, 739
Mph1103I ATGCAT 4 cut(s) 191, 316, 492, 639
MseI TTAA 2 cut(s) 590, 695
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 2 cut(s) 276, 360
NdeII GATC 4 cut(s) 34, 522, 571, 598
NlaIII CATG 4 cut(s) 150, 471, 578, 661
NlaIV GGNNCC 3 cut(s) 116, 389, 554
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 4 cut(s) 191, 316, 492, 639
PfeI GAWTC 3 cut(s) 158, 266, 533
PkrI GCNGC 3 cut(s) 257, 733, 736
PleI GAGTC 2 cut(s) 12, 208
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 2 cut(s) 12, 208
Ppu21I YACGTR 1 cut(s) 65
PspCI CACGTG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 116, 389, 554
PspPI GGNCC 2 cut(s) 278, 553
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 1 cut(s) 642
Rsr2I CGGWCCG 1 cut(s) 278
RsrII CGGWCCG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 590, 695
SatI GCNGC 3 cut(s) 256, 732, 735
Sau3AI GATC 4 cut(s) 34, 522, 571, 598
Sau96I GGNCC 2 cut(s) 278, 553
SchI GAGTC 2 cut(s) 13, 208
SduI GDGCHC 1 cut(s) 776
SetI ASST 9 cut(s) 13, 31, 67, 260, 339, 454, 669, 723, 745
SfaNI GCATC 7 cut(s) 176, 198, 301, 358, 472, 624, 634
SinI GGWCC 2 cut(s) 278, 553
SmiMI CAYNNNNRTG 1 cut(s) 642
Sse9I AATT 8 cut(s) 100, 328, 343, 527, 619, 703, 712, 790
SsiI CCGC 2 cut(s) 281, 732
TaaI ACNGT 2 cut(s) 409, 517
TaiI ACGT 1 cut(s) 67
TaqI TCGA 4 cut(s) 333, 567, 601, 642
TasI AATT 8 cut(s) 100, 328, 343, 527, 619, 703, 712, 790
TatI WGTACW 1 cut(s) 707
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 3 cut(s) 158, 266, 533
Tru1I TTAA 2 cut(s) 590, 695
Tru9I TTAA 2 cut(s) 590, 695
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 255, 734
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 111, 135, 238, 336, 644
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 2 cut(s) 278, 553
XapI RAATTY 5 cut(s) 100, 328, 527, 619, 712
Zsp2I ATGCAT 4 cut(s) 191, 316, 492, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.