Prupe.7G096800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017334
Physical Location & Seq
Forward (+)
12843505 .. 12845263
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G096800.1

Sequence Viewer

Length: 660 bp
ATGGCTTCTTTGTGGTGCAAAAAGTCTCCAGATTGCAGTAAAATTCGTGGATACATCCTGCTTTTTGTTATAGTGGTGAGTCTAGCAACAGTCATCGGATTTTCTCTCTGGTTCTTAGGCAACTATGTGGATTCAAAGTCCGGCCCAGGAACAGACCCCCTTGTGCTTCGTTTGGATGCATTTTCTCTATCGAATTTCGAGGTTTCGAATTCATCATTCTCAGCTGAATGGGAGGCCAAGTTGACATTTGGGAACCAAAACGGTGGCCTAACTGTTACCCTCAACCCCTTTGAGAGTTATGTGTTCTATAAAGAACGTGAGGCTCTATCATGTGCTTCTGTGGATGCAATGTTGCATGTTCCTCCAAGGAAACAGAAAACTCTGCAGATCAAATTTGATCCGACAAGTTGCGGAGGAGAACAGCCGTATGTGGAGGATCGAGTGATGAAGGAGTTGAGTGAAGATCGAAAGAGTGGTCACCTTAGCTTTAGTTTGAAAATGCGCATAGATGCTTCTTATAGTATGAGGGAGCTTTTGGGAATGGGAACCCAAGTGACTTTAAATCCTAACTGTTCAGGGTTGAAGGTTCAGTTTGAGGGTGCAAAAGGGGAGGGAAAGATAAATGGGGGCCGCAAGTGCACCATTCCATTACCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.17

Weight (kDa)

8.69

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017334)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20210
malus_domestica MD12G1039000.v1.1
prunus_persica Prupe.7G096800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475751
rosa_laevigata RLG00000023819
rosa_multiflora Rmu_sc0000539.1_g000074
rosa_roxburghii Rroxscaffold_6G00405890
rosa_rugosa Rorug03G0151200
rosa_samantha Rh3AG200900 Rh3BG231300 Rh3CG226000 Rh3DG226500
rosa_wichuraiana Rw3G018280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 503
AciI CCGC 2 cut(s) 411, 631
AclWI GGATC 2 cut(s) 392, 444
AcsI RAATTY 4 cut(s) 42, 193, 208, 392
AgsI TTSAA 3 cut(s) 135, 496, 583
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 224, 486, 532
AluI AGCT 3 cut(s) 224, 486, 532
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 1 cut(s) 30
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 2 cut(s) 392, 444
AoxI GGCC 4 cut(s) 142, 234, 265, 628
ApaLI GTGCAC 1 cut(s) 637
ApoI RAATTY 4 cut(s) 42, 193, 208, 392
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 143, 628
AsuHPI GGTGA 2 cut(s) 88, 470
AsuII TTCGAA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 1 cut(s) 631
BlsI GCNGC 1 cut(s) 632
Bme1390I CCNGG 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 143, 628
BmiI GGNNCC 3 cut(s) 254, 547, 629
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 3 cut(s) 166, 334, 499
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 145, 365
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 145, 365
BseGI GGATG 3 cut(s) 54, 181, 349
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 641
BshFI GGCC 4 cut(s) 144, 236, 267, 630
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 4 cut(s) 144, 236, 267, 630
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 4 cut(s) 387, 397, 436, 463
BspACI CCGC 2 cut(s) 411, 631
BspANI GGCC 4 cut(s) 144, 236, 267, 630
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 254, 547, 629
BspMAI CTGCAG 1 cut(s) 387
BspPI GGATC 2 cut(s) 392, 444
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 145, 365
BssMI GATC 4 cut(s) 387, 397, 436, 463
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 4 cut(s) 91, 263, 274, 572
BstBI TTCGAA 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 115, 220, 482
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 3 cut(s) 54, 181, 349
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 4 cut(s) 390, 400, 439, 466
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 4 cut(s) 387, 397, 436, 463
BstMWI GCNNNNNNNGC 1 cut(s) 636
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 641
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 4 cut(s) 144, 236, 267, 630
BtsCI GGATG 3 cut(s) 54, 181, 349
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 143, 628
CviAII CATG 2 cut(s) 330, 356
DdeI CTNAG 3 cut(s) 115, 220, 482
DpnI GATC 4 cut(s) 389, 399, 438, 465
DpnII GATC 4 cut(s) 387, 397, 436, 463
DraI TTTAAA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 2 cut(s) 333, 359
FatI CATG 2 cut(s) 329, 355
Fnu4HI GCNGC 1 cut(s) 631
FokI GGATG 3 cut(s) 41, 188, 356
Fsp4HI GCNGC 1 cut(s) 631
FspAI RTGCGCAY 1 cut(s) 503
FspBI CTAG 1 cut(s) 83
FspI TGCGCA 1 cut(s) 503
GlaI GCGC 1 cut(s) 503
GluI GCNGC 1 cut(s) 631
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 4 cut(s) 144, 236, 267, 630
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 504
Hin1II CATG 2 cut(s) 333, 359
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 79, 131
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 88, 470
Hpy166II GTNNAC 2 cut(s) 243, 639
Hpy188I TCNGA 2 cut(s) 98, 402
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 243, 639
HpyAV CCTTC 2 cut(s) 442, 577
HpyCH4III ACNGT 4 cut(s) 91, 263, 274, 572
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 8 cut(s) 18, 36, 179, 347, 355, 385, 602, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 636
HpyF3I CTNAG 3 cut(s) 115, 220, 482
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 2 cut(s) 333, 359
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 387, 397, 436, 463
LmnI GCTCC 1 cut(s) 529
LpnPI CCDG 7 cut(s) 42, 71, 94, 132, 154, 159, 561
LweI GCATC 3 cut(s) 166, 334, 499
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 274, 476, 553
MalI GATC 4 cut(s) 389, 399, 438, 465
MboI GATC 4 cut(s) 387, 397, 436, 463
MboII GAAGA 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 4 cut(s) 42, 193, 208, 392
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 636
NdeII GATC 4 cut(s) 387, 397, 436, 463
NlaIII CATG 2 cut(s) 333, 359
NlaIV GGNNCC 3 cut(s) 254, 547, 629
NmuCI GTSAC 2 cut(s) 476, 553
NsbI TGCGCA 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 359
NspV TTCGAA 1 cut(s) 206
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 632
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 254, 547, 629
PspPI GGNCC 2 cut(s) 143, 628
PstI CTGCAG 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 1 cut(s) 631
Sau3AI GATC 4 cut(s) 387, 397, 436, 463
Sau96I GGNCC 2 cut(s) 143, 628
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 641
SetI ASST 8 cut(s) 204, 226, 319, 483, 488, 534, 588, 655
SfaNI GCATC 3 cut(s) 166, 334, 499
SfcI CTRYAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 206
Sse9I AATT 4 cut(s) 42, 193, 208, 392
SsiI CCGC 2 cut(s) 411, 631
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 4 cut(s) 91, 263, 274, 572
TaiI ACGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 191, 198, 206, 439, 466
TasI AATT 4 cut(s) 42, 193, 208, 392
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TseFI GTSAC 2 cut(s) 476, 553
Tsp45I GTSAC 2 cut(s) 476, 553
TspDTI ATGAA 2 cut(s) 201, 461
VneI GTGCAC 1 cut(s) 637
XapI RAATTY 4 cut(s) 42, 193, 208, 392
XceI RCATGY 1 cut(s) 359
XspI CTAG 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.