Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014766

Physical Location & Seq

Genomic Coordinates Reverse (-)

15357343 .. 15360201

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCCCCAGCTGCAAAACCACTTCTGAGGATAGCACTGCCAACTCTGGCCCTAAACGCTTCCAATGTCGCCACTGTCCCAAATCATTTAACAATGGCCACGCTCTCGGTGGGCACCAGAATGCTCACCGTGGCTTAGACAAGGGTTTCATGAAGACTCTAAAACAGATCATCCGGGCAACCTACAGGGAACAGTTTCCAGGTAACCCCTCATCTCCTTCTGTTGCAGCCGCAGCGAAGCTGCTGCCATCTGCTGAAGTCCTTGCAGGCCTTGGAGTTGTTAAGCCTGGAAGGTTAACGGAACCCGAGCTTCCTGGAGGAGGTAGAACAATAGATTTTCTCACACAATGGAAGCCCGTTTGTACTGGTCCTATTGTTCCGGTGGAGATTGAGGAGACCTTGGACTTGGAACTCAAATTGGTTACGATGGCACCGAGTAGTGAAGCAAACTCTGTCCACAGCACGGCGACCTCAGGCCCTGGAGAGGTATATAAGTGCCGCCATTGTGAGAAAACCTTCCGCAATGGTCAGGCACTGGGCGGTCACCAGAATGCCCACCGCAGCGTTCATAGGGGGGTCATGAGGAGAATTGCTGATGCTGTGGGCTCCCTCAGGAACCCGCAACAGCTGGCTGCTGGTCCTGCATCGTTCGAATCCTGTGAGGTCAATCAGGTAGTCCACCTTAGAAGGAAGATAGAGCCGCAGAATCCCCGAGAGGGTAAAACAAGAGTCTTTAAAGACTGGAGGGACAAAGCAGCTGTAGACTCGGATTCAGAAAGAACAGTCTCCGAGTCAGTTGTTCCCAAGAGACCTTTTCATAAAAGAAATGGAGAGGAAGTGATGAGTGCTCCCCAGAATGTAGATTTGGAACTCAAACTAGGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.13

Weight (kDa)

9.38

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21781
rosa_laevigata	RLG00000023602 RLG00000023603
rosa_multiflora	Rmu_sc0002555.1_g000003 Rmu_sc0017898.1_g000001 Rmu_sc0031020.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402660 Rroxscaffold_6G00402680
rosa_rugosa	Rorug03G0171500 Rorug03G0171500
rosa_samantha	Rh3BG255200 Rh3CG250900 Rh3CG251100 Rh3DG247300 Rh3DG247400
rosa_wichuraiana	Rw3G019970 Rw3G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	114, 430
AccI	GTMKAC	1 cut(s)	762
AciI	CCGC	7 cut(s)	231, 499, 520, 540, 559, 620, 701
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	4 cut(s)	320, 463, 484, 716
AjnI	CCWGG	4 cut(s)	199, 286, 313, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AluBI	AGCT	5 cut(s)	12, 241, 310, 628, 758
AluI	AGCT	5 cut(s)	12, 241, 310, 628, 758
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	3 cut(s)	389, 790, 802
AlwNI	CAGNNNCTG	2 cut(s)	479, 535
Ama87I	CYCGRG	2 cut(s)	305, 711
AoxI	GGCC	5 cut(s)	3, 49, 97, 268, 475
ApeKI	GCWGC	8 cut(s)	12, 227, 233, 241, 244, 561, 632, 755
Asp700I	GAANNNNTTC	2 cut(s)	195, 515
AspS9I	GGNCC	5 cut(s)	4, 50, 368, 476, 638
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	119, 536
AsuII	TTCGAA	1 cut(s)	651
AvaI	CYCGRG	2 cut(s)	305, 711
AvaII	GGWCC	2 cut(s)	368, 638
AxyI	CCTNAGG	2 cut(s)	472, 611
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	2 cut(s)	114, 430
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	7 cut(s)	228, 231, 239, 245, 573, 619, 767
BccI	CCATC	2 cut(s)	256, 421
BceAI	ACGGC	1 cut(s)	480
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	4 cut(s)	201, 288, 315, 480
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	389, 790, 802
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	2 cut(s)	184, 759
Bme1390I	CCNGG	5 cut(s)	176, 201, 288, 315, 480
Bme18I	GGWCC	2 cut(s)	368, 638
BmeT110I	CYCGRG	2 cut(s)	305, 711
BmgT120I	GGNCC	5 cut(s)	4, 50, 368, 476, 638
BmiI	GGNNCC	6 cut(s)	6, 116, 303, 432, 607, 617
BmrFI	CCNGG	5 cut(s)	176, 201, 288, 315, 480
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	586, 653
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	3 cut(s)	336, 501, 763
Bpu14I	TTCGAA	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	176
BsaI	GGTCTC	2 cut(s)	389, 802
BsaJI	CCNNGG	4 cut(s)	130, 271, 399, 478
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 463, 484, 716
Bse1I	ACTGG	3 cut(s)	370, 540, 746
Bse21I	CCTNAGG	2 cut(s)	472, 611
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	4 cut(s)	201, 288, 315, 480
BseDI	CCNNGG	4 cut(s)	130, 271, 399, 478
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	320, 463, 484, 716
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	18, 486, 625
BseNI	ACTGG	3 cut(s)	370, 540, 746
BseRI	GAGGAG	3 cut(s)	333, 407, 598
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	7 cut(s)	228, 231, 239, 245, 573, 619, 767
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	5 cut(s)	5, 51, 99, 270, 477
BshNI	GGYRCC	2 cut(s)	114, 430
BsiHKAI	GWGCWC	1 cut(s)	850
BsiHKCI	CYCGRG	2 cut(s)	305, 711
BsiSI	CCGG	2 cut(s)	175, 380
BslFI	GGGAC	2 cut(s)	63, 761
BslI	CCNNNNNNNGG	4 cut(s)	320, 463, 484, 716
BsmAI	GTCTC	3 cut(s)	389, 790, 802
BsmFI	GGGAC	2 cut(s)	63, 761
BsmI	GAATGC	2 cut(s)	127, 556
BsnI	GGCC	5 cut(s)	5, 51, 99, 270, 477
Bso31I	GGTCTC	2 cut(s)	389, 802
BsoBI	CYCGRG	2 cut(s)	305, 711
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	3 cut(s)	117, 608, 850
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	7 cut(s)	231, 499, 520, 540, 559, 620, 701
BspANI	GGCC	5 cut(s)	5, 51, 99, 270, 477
BspCNI	CTCAG	3 cut(s)	19, 485, 624
BspHI	TCATGA	2 cut(s)	150, 579
BspLI	GGNNCC	6 cut(s)	6, 116, 303, 432, 607, 617
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	114, 430
BspTNI	GGTCTC	2 cut(s)	389, 802
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	370, 540, 746
BssECI	CCNNGG	4 cut(s)	130, 271, 399, 478
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	271, 399
Bst2UI	CCWGG	4 cut(s)	201, 288, 315, 480
Bst4CI	ACNGT	4 cut(s)	77, 131, 195, 784
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	268, 630
BstDEI	CTNAG	5 cut(s)	27, 136, 472, 611, 683
BstDSI	CCRYGG	1 cut(s)	130
BstEII	GGTNACC	2 cut(s)	203, 542
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	3 cut(s)	389, 790, 802
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 233, 641
BstNI	CCWGG	4 cut(s)	201, 288, 315, 480
BstPI	GGTNACC	2 cut(s)	203, 542
BstSCI	CCNGG	5 cut(s)	174, 199, 286, 313, 478
BstSFI	CTRYAG	2 cut(s)	184, 759
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	7 cut(s)	228, 231, 239, 245, 573, 619, 767
BstV2I	GAAGAC	1 cut(s)	161
Bsu36I	CCTNAGG	2 cut(s)	472, 611
BsuRI	GGCC	5 cut(s)	5, 51, 99, 270, 477
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 73, 533
Cac8I	GCNNGC	2 cut(s)	268, 630
CaiI	CAGNNNCTG	2 cut(s)	479, 535
CciI	TCATGA	2 cut(s)	150, 579
Cfr13I	GGNCC	5 cut(s)	4, 50, 368, 476, 638
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	2 cut(s)	151, 580
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	5 cut(s)	27, 136, 472, 611, 683
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	271, 399
Eco147I	AGGCCT	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	2 cut(s)	389, 802
Eco47I	GGWCC	2 cut(s)	368, 638
Eco57I	CTGAAG	1 cut(s)	276
Eco81I	CCTNAGG	2 cut(s)	472, 611
Eco88I	CYCGRG	2 cut(s)	305, 711
Eco91I	GGTNACC	2 cut(s)	203, 542
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	476
EcoO65I	GGTNACC	2 cut(s)	203, 542
EcoRII	CCWGG	4 cut(s)	199, 286, 313, 478
EcoT14I	CCWWGG	2 cut(s)	271, 399
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	271, 399
FaeI	CATG	2 cut(s)	154, 583
FaiI	YATR	6 cut(s)	152, 490, 492, 570, 581, 819
FaqI	GGGAC	2 cut(s)	63, 761
FatI	CATG	2 cut(s)	150, 579
FauI	CCCGC	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	762
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	608
FspBI	CTAG	1 cut(s)	878
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	3 cut(s)	336, 501, 763
HaeIII	GGCC	5 cut(s)	5, 51, 99, 270, 477
HapII	CCGG	2 cut(s)	175, 380
Hin1II	CATG	2 cut(s)	154, 583
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	7 cut(s)	157, 653, 706, 729, 764, 770, 791
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	175, 380
HphI	GGTGA	2 cut(s)	119, 536
Hpy166II	GTNNAC	4 cut(s)	297, 457, 679, 763
Hpy188I	TCNGA	4 cut(s)	28, 769, 775, 790
Hpy188III	TCNNGA	3 cut(s)	151, 580, 613
Hpy8I	GTNNAC	4 cut(s)	297, 457, 679, 763
HpyAV	CCTTC	4 cut(s)	228, 285, 526, 681
HpyCH4III	ACNGT	4 cut(s)	77, 131, 195, 784
HpyCH4V	TGCA	4 cut(s)	15, 227, 266, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 233, 641
HpyF3I	CTNAG	5 cut(s)	27, 136, 472, 611, 683
Hsp92II	CATG	2 cut(s)	154, 583
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	611, 853
Lsp1109I	GCAGC	7 cut(s)	228, 231, 239, 245, 573, 619, 767
LweI	GCATC	2 cut(s)	586, 653
MaeI	CTAG	1 cut(s)	878
MaeIII	GTNAC	3 cut(s)	203, 421, 542
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	166, 703
MhlI	GDGCHC	3 cut(s)	117, 608, 850
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	416, 588
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	4 cut(s)	151, 738, 758, 800
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	2 cut(s)	195, 515
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	90, 282, 296, 735
MslI	CAYNNNNRTG	2 cut(s)	120, 549
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	3 cut(s)	12, 628, 758
MspI	CCGG	2 cut(s)	175, 380
MspR9I	CCNGG	5 cut(s)	176, 201, 288, 315, 480
Mva1269I	GAATGC	2 cut(s)	127, 556
MvaI	CCWGG	4 cut(s)	201, 288, 315, 480
MwoI	GCNNNNNNNGC	3 cut(s)	57, 233, 641
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	154, 583
NlaIV	GGNNCC	6 cut(s)	6, 116, 303, 432, 607, 617
NmuCI	GTSAC	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	651
PagI	TCATGA	2 cut(s)	150, 579
PceI	AGGCCT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	2 cut(s)	127, 556
PdmI	GAANNNNTTC	2 cut(s)	195, 515
PfeI	GAWTC	3 cut(s)	653, 706, 770
PfoI	TCCNGGA	1 cut(s)	313
PleI	GAGTC	4 cut(s)	151, 737, 758, 799
PpsI	GAGTC	4 cut(s)	151, 737, 758, 799
Psp6I	CCWGG	4 cut(s)	199, 286, 313, 478
PspEI	GGTNACC	2 cut(s)	203, 542
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	4 cut(s)	199, 286, 313, 478
PspN4I	GGNNCC	6 cut(s)	6, 116, 303, 432, 607, 617
PspPI	GGNCC	5 cut(s)	4, 50, 368, 476, 638
PstNI	CAGNNNCTG	2 cut(s)	479, 535
PvuII	CAGCTG	3 cut(s)	12, 628, 758
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	120, 549
SaqAI	TTAA	4 cut(s)	90, 282, 296, 735
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	5 cut(s)	4, 50, 368, 476, 638
SchI	GAGTC	4 cut(s)	151, 738, 758, 800
ScrFI	CCNGG	5 cut(s)	176, 201, 288, 315, 480
SduI	GDGCHC	3 cut(s)	117, 608, 850
SfaNI	GCATC	2 cut(s)	586, 653
SfcI	CTRYAG	2 cut(s)	184, 759
SfuI	TTCGAA	1 cut(s)	651
SinI	GGWCC	2 cut(s)	368, 638
SmiMI	CAYNNNNRTG	2 cut(s)	120, 549
Sse9I	AATT	2 cut(s)	416, 588
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	7 cut(s)	231, 499, 520, 540, 559, 620, 701
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	5 cut(s)	174, 199, 286, 313, 478
StyI	CCWWGG	2 cut(s)	271, 399
TaaI	ACNGT	4 cut(s)	77, 131, 195, 784
TaqI	TCGA	1 cut(s)	651
TasI	AATT	2 cut(s)	416, 588
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	3 cut(s)	233, 501, 703
TfiI	GAWTC	3 cut(s)	653, 706, 770
Tru1I	TTAA	4 cut(s)	90, 282, 296, 735
Tru9I	TTAA	4 cut(s)	90, 282, 296, 735
TscAI	CASTG	3 cut(s)	43, 80, 540
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	8 cut(s)	12, 227, 233, 241, 244, 561, 632, 755
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	139, 167, 557, 806
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	43, 80, 540
VpaK11BI	GGWCC	2 cut(s)	368, 638
XagI	CCTNNNNNAGG	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	762
XmnI	GAANNNNTTC	2 cut(s)	195, 515
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.