Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014766

Physical Location & Seq

Genomic Coordinates Reverse (-)

24272070 .. 24272483

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCCCCAGCCGCAAAACCAGCACTGAGGATAGCACTGCTAACTCTGCCCCTAAATACTTCCAATGTCGCCACTGTCCAAAATCATTTACCAATGGTCACGCTCTCGGTGGCCACCAGAATGCCCACCGTGGCCTTGACAAGGGTATGATGAAGACTCTGAAACAGATCTTGGCAATCTATAGGGAACAGTTTCCAGGTAATTCCTCATCTCCTTCTGTTGCGGCAGAAGCAAAGCTGCTGCCATCAGCCGAAGTCACTGTAGGCCATGGAGTTGTTATGCCTGGAAGGGCAACCGAGCTGCCCGGAGGAGTTAGAACAATAGATTTTCTCAAGCAATGGAAGCCCATCTATACTGATCCAATTGTTCCAGTGGAGATTGAGGAGAACTTGGACTTGGAACTCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.95

Weight (kDa)

8.58

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21781
rosa_laevigata	RLG00000023602 RLG00000023603
rosa_multiflora	Rmu_sc0002555.1_g000003 Rmu_sc0017898.1_g000001 Rmu_sc0031020.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402660 Rroxscaffold_6G00402680
rosa_rugosa	Rorug03G0171500 Rorug03G0171500
rosa_samantha	Rh3BG255200 Rh3CG250900 Rh3CG251100 Rh3DG247300 Rh3DG247400
rosa_wichuraiana	Rw3G019970 Rw3G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 224
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	196, 283
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 380, 412
AluBI	AGCT	2 cut(s)	238, 301
AluI	AGCT	2 cut(s)	238, 301
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	4 cut(s)	3, 112, 133, 265
ApeKI	GCWGC	3 cut(s)	238, 241, 301
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	225, 228, 288
BccI	CCATC	2 cut(s)	253, 356
BciT130I	CCWGG	2 cut(s)	198, 285
BcnI	CCSGG	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	181, 261
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	5 cut(s)	13, 225, 239, 242, 302
BlsI	GCNGC	5 cut(s)	14, 226, 240, 243, 303
Bme1390I	CCNGG	3 cut(s)	198, 285, 306
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	198, 285, 306
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	130, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	198, 285
BseDI	CCNNGG	2 cut(s)	130, 268
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	2 cut(s)	324, 398
BseXI	GCAGC	3 cut(s)	225, 228, 288
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	4 cut(s)	5, 114, 135, 267
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	5, 114, 135, 267
Bsp143I	GATC	2 cut(s)	168, 358
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	2 cut(s)	13, 224
BspANI	GGCC	4 cut(s)	5, 114, 135, 267
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	130, 268
BssMI	GATC	2 cut(s)	168, 358
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	198, 285
Bst4CI	ACNGT	4 cut(s)	77, 131, 192, 262
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	130, 268
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	171, 361
BstMBI	GATC	2 cut(s)	168, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 47, 230, 343
BstNI	CCWGG	2 cut(s)	198, 285
BstSCI	CCNGG	3 cut(s)	196, 283, 304
BstSFI	CTRYAG	2 cut(s)	181, 261
BstV1I	GCAGC	3 cut(s)	225, 228, 288
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	5, 114, 135, 267
BtgI	CCRYGG	2 cut(s)	130, 268
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	5 cut(s)	24, 36, 73, 258, 378
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	9 cut(s)	5, 12, 114, 135, 238, 251, 267, 301, 346
CviKI_1	RGCY	9 cut(s)	5, 12, 114, 135, 238, 251, 267, 301, 346
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	170, 360
DpnII	GATC	2 cut(s)	168, 358
EaeI	YGGCCR	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	196, 283
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	272
FaiI	YATR	5 cut(s)	149, 183, 270, 281, 354
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	13, 225, 239, 242, 302
Fsp4HI	GCNGC	5 cut(s)	13, 225, 239, 242, 302
GluI	GCNGC	5 cut(s)	13, 225, 239, 242, 302
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	5, 114, 135, 267
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	1 cut(s)	272
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	225, 282
HpyCH4III	ACNGT	4 cut(s)	77, 131, 192, 262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 47, 230, 343
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	168, 358
LpnPI	CCDG	9 cut(s)	22, 34, 131, 183, 210, 270, 297, 319, 384
Lsp1109I	GCAGC	3 cut(s)	225, 228, 288
MaeIII	GTNAC	2 cut(s)	98, 256
MalI	GATC	2 cut(s)	170, 360
MboI	GATC	2 cut(s)	168, 358
MboII	GAAGA	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	3 cut(s)	202, 363, 407
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	22, 217, 302, 376
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	198, 285, 306
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	198, 285
MwoI	GCNNNNNNNGC	4 cut(s)	21, 47, 230, 343
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	168, 358
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	98, 256
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	14, 226, 240, 243, 303
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	196, 283
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	196, 283
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	5 cut(s)	13, 225, 239, 242, 302
Sau3AI	GATC	2 cut(s)	168, 358
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	198, 285, 306
SetI	ASST	3 cut(s)	202, 240, 303
SfcI	CTRYAG	2 cut(s)	181, 261
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	202, 363, 407
SsiI	CCGC	2 cut(s)	13, 224
StyD4I	CCNGG	3 cut(s)	196, 283, 304
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	77, 131, 192, 262
TasI	AATT	3 cut(s)	202, 363, 407
TauI	GCSGC	2 cut(s)	15, 227
TscAI	CASTG	5 cut(s)	31, 43, 80, 265, 378
TseFI	GTSAC	2 cut(s)	98, 256
TseI	GCWGC	3 cut(s)	238, 241, 301
Tsp45I	GTSAC	2 cut(s)	98, 256
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	5 cut(s)	31, 43, 80, 265, 378
XagI	CCTNNNNNAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.