Rroxscaffold_6G00402680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014766
Physical Location & Seq
Forward (+)
25097143 .. 25097688
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402680.1

Sequence Viewer

Length: 297 bp
ATGGGCTCCCTCAGGAGCCCACAGCAACAGGTTGCTGATCCCTCATCGTTCGAATCCAGTGAGGTCAATCAGGCAGTCCACCTTCGAAGGACGACAGAACCGGAGAAGCCTCCAGATGGTAAAACAAGAATCTTTCTTGAAGAATGGAGGGACAAAGCAGCTGCAGACTCGGATTCAGAAAGAACAGTCTCTCAGTCAATTGTTCCCAAGAGACCTTGTTATAAGAGAAAAGGGGAAGAAGTGATGAGTACTCCCCATAATATAGATTTGGACCTCAAATTAGGGATGATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

6.11

Isoelectric Point (pI)

79.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AclWI GGATC 1 cut(s) 32
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 193, 205
AlwI GGATC 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 158, 161
AspS9I GGNCC 1 cut(s) 271
AsuII TTCGAA 2 cut(s) 51, 85
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 11
BanII GRGCYC 2 cut(s) 8, 20
BbvI GCAGC 2 cut(s) 148, 170
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 193, 205
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 159, 162
BlsI GCNGC 2 cut(s) 160, 163
BmcAI AGTACT 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 7, 17
BpmI CTGGAG 1 cut(s) 96
Bpu14I TTCGAA 2 cut(s) 51, 85
BsaI GGTCTC 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 57
Bse21I CCTNAGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 25, 206
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 148, 170
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 193, 205
BsmFI GGGAC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 205
Bsp119I TTCGAA 2 cut(s) 51, 85
Bsp1286I GDGCHC 2 cut(s) 8, 20
Bsp143I GATC 2 cut(s) 37, 288
BspCNI CTCAG 2 cut(s) 24, 205
BspLI GGNNCC 2 cut(s) 7, 17
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 32
BspT104I TTCGAA 2 cut(s) 51, 85
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 37, 288
Bst4CI ACNGT 1 cut(s) 187
BstBI TTCGAA 2 cut(s) 51, 85
BstDEI CTNAG 2 cut(s) 11, 192
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 2 cut(s) 40, 291
BstMAI GTCTC 2 cut(s) 193, 205
BstMBI GATC 2 cut(s) 37, 288
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 148, 170
Bsu36I CCTNAGG 1 cut(s) 11
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 249
CviJI RGCY 4 cut(s) 6, 18, 109, 161
CviKI_1 RGCY 4 cut(s) 6, 18, 109, 161
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 2 cut(s) 11, 192
DpnI GATC 2 cut(s) 39, 290
DpnII GATC 2 cut(s) 37, 288
Eco24I GRGCYC 2 cut(s) 8, 20
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 11
EcoT38I GRGCYC 2 cut(s) 8, 20
FaiI YATR 3 cut(s) 222, 258, 263
FaqI GGGAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 159, 162
FriOI GRGCYC 2 cut(s) 8, 20
Fsp4HI GCNGC 2 cut(s) 159, 162
GluI GCNGC 2 cut(s) 159, 162
GsuI CTGGAG 1 cut(s) 96
HapII CCGG 1 cut(s) 101
HinfI GANTC 4 cut(s) 53, 129, 167, 173
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 172, 178
Hpy188III TCNNGA 3 cut(s) 13, 113, 137
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 81, 92
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 11, 192
Kzo9I GATC 2 cut(s) 37, 288
LmnI GCTCC 2 cut(s) 11, 15
LpnPI CCDG 5 cut(s) 14, 56, 70, 114, 126
Lsp1109I GCAGC 2 cut(s) 148, 170
MalI GATC 2 cut(s) 39, 290
MboI GATC 2 cut(s) 37, 288
MboII GAAGA 2 cut(s) 152, 248
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 8, 20
MluCI AATT 2 cut(s) 198, 278
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 6 cut(s) 20, 52, 55, 120, 141, 284
MseI TTAA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 198
NdeII GATC 2 cut(s) 37, 288
NlaIV GGNNCC 2 cut(s) 7, 17
NspV TTCGAA 2 cut(s) 51, 85
PfeI GAWTC 3 cut(s) 53, 129, 173
PkrI GCNGC 2 cut(s) 160, 163
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PsiI TTATAA 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 7, 17
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 159, 162
Sau3AI GATC 2 cut(s) 37, 288
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 8, 20
SetI ASST 6 cut(s) 33, 66, 84, 163, 217, 276
SfcI CTRYAG 1 cut(s) 162
SfuI TTCGAA 2 cut(s) 51, 85
SinI GGWCC 1 cut(s) 271
Sse9I AATT 2 cut(s) 198, 278
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 51, 85
TasI AATT 2 cut(s) 198, 278
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 3 cut(s) 53, 129, 173
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 158, 161
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.