Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014766

Physical Location & Seq

Genomic Coordinates Reverse (-)

24384712 .. 24385131

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCCCCAGCCGCAAAACCAGCACTGAGGATAGCACTGCTAACTCTGCCCCTAAATACTTCCAATGTCGCCACTGTCCAAAATCATTTACCAATGGTCACGCTCTCGGTGGCCACCAGAATGCCCACCGTGGCCTTGACAAGGGTATGATGAAGACTCTGAAACAGATCTTGGCAATCTATAGGGAACAGTTTCCAGGTAATTCCTCATCTCCTTCTGTTGCGGCAGAAGCAAAGCTGCTGCCATCAGCCGAAGTCACTGTAGGCCATGGAGTTGTTATGCCTGGAAAGTTGACAGAGCCCGAGCTGCCCGGAGGAGTTAGAACAATAGATTTTCTCAAGCAATGGAAGCCCATCTATACTGATCCAATTGTTCCAGTGGAGATTGAGGAGAAATTGGACTTGGAACTCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

139

Amino Acids

15.21

Weight (kDa)

8.55

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21781
rosa_laevigata	RLG00000023602 RLG00000023603
rosa_multiflora	Rmu_sc0002555.1_g000003 Rmu_sc0017898.1_g000001 Rmu_sc0031020.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402660 Rroxscaffold_6G00402680
rosa_rugosa	Rorug03G0171500 Rorug03G0171500
rosa_samantha	Rh3BG255200 Rh3CG250900 Rh3CG251100 Rh3DG247300 Rh3DG247400
rosa_wichuraiana	Rw3G019970 Rw3G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 224
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	196, 283
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 386, 418
AluBI	AGCT	2 cut(s)	238, 307
AluI	AGCT	2 cut(s)	238, 307
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	3, 112, 133, 265
ApeKI	GCWGC	3 cut(s)	238, 241, 307
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	225, 228, 294
BccI	CCATC	2 cut(s)	253, 362
BciT130I	CCWGG	2 cut(s)	198, 285
BcnI	CCSGG	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	181, 261
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	5 cut(s)	13, 225, 239, 242, 308
BlsI	GCNGC	5 cut(s)	14, 226, 240, 243, 309
Bme1390I	CCNGG	3 cut(s)	198, 285, 312
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	198, 285, 312
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	130, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	198, 285
BseDI	CCNNGG	2 cut(s)	130, 268
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	330, 404
BseXI	GCAGC	3 cut(s)	225, 228, 294
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	4 cut(s)	5, 114, 135, 267
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	5, 114, 135, 267
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	168, 364
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	2 cut(s)	13, 224
BspANI	GGCC	4 cut(s)	5, 114, 135, 267
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	130, 268
BssMI	GATC	2 cut(s)	168, 364
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	198, 285
Bst4CI	ACNGT	4 cut(s)	77, 131, 192, 262
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	130, 268
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	171, 367
BstMBI	GATC	2 cut(s)	168, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 47, 230, 307, 349
BstNI	CCWGG	2 cut(s)	198, 285
BstSCI	CCNGG	3 cut(s)	196, 283, 310
BstSFI	CTRYAG	2 cut(s)	181, 261
BstV1I	GCAGC	3 cut(s)	225, 228, 294
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	5, 114, 135, 267
BtgI	CCRYGG	2 cut(s)	130, 268
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	5 cut(s)	24, 36, 73, 258, 384
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	170, 366
DpnII	GATC	2 cut(s)	168, 364
EaeI	YGGCCR	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	196, 283
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	272
FaiI	YATR	5 cut(s)	149, 183, 270, 281, 360
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	13, 225, 239, 242, 308
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	13, 225, 239, 242, 308
GluI	GCNGC	5 cut(s)	13, 225, 239, 242, 308
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	5, 114, 135, 267
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	4 cut(s)	77, 131, 192, 262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 47, 230, 307, 349
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	168, 364
LpnPI	CCDG	9 cut(s)	22, 34, 131, 183, 210, 270, 297, 325, 390
Lsp1109I	GCAGC	3 cut(s)	225, 228, 294
MaeIII	GTNAC	2 cut(s)	98, 256
MalI	GATC	2 cut(s)	170, 366
MboI	GATC	2 cut(s)	168, 364
MboII	GAAGA	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	4 cut(s)	202, 369, 395, 413
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	22, 217, 308, 382
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	3 cut(s)	198, 285, 312
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	198, 285
MwoI	GCNNNNNNNGC	5 cut(s)	21, 47, 230, 307, 349
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	168, 364
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	98, 256
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	14, 226, 240, 243, 309
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	196, 283
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	196, 283
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	5 cut(s)	13, 225, 239, 242, 308
Sau3AI	GATC	2 cut(s)	168, 364
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	198, 285, 312
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	3 cut(s)	202, 240, 309
SfcI	CTRYAG	2 cut(s)	181, 261
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	4 cut(s)	202, 369, 395, 413
SsiI	CCGC	2 cut(s)	13, 224
StyD4I	CCNGG	3 cut(s)	196, 283, 310
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	77, 131, 192, 262
TasI	AATT	4 cut(s)	202, 369, 395, 413
TauI	GCSGC	2 cut(s)	15, 227
TscAI	CASTG	5 cut(s)	31, 43, 80, 265, 384
TseFI	GTSAC	2 cut(s)	98, 256
TseI	GCWGC	3 cut(s)	238, 241, 307
Tsp45I	GTSAC	2 cut(s)	98, 256
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	5 cut(s)	31, 43, 80, 265, 384
XagI	CCTNNNNNAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.