Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014766

Physical Location & Seq

Genomic Coordinates Forward (+)

25843677 .. 25844278

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCCCCCAGCCGCAAAACCAGTACTGAGGATAGCACTGCTAACTCTGCCCCTAAATACTTCCAATGTCGCCACTGTCCGAAATCATTTACCAATGGTCACGCTCTTGGTGGCCACCAGAATGCCCACCGTGGCCTTGACAAGGGTATGATGAAGACTCTGAAACAGATCTTGGCAATCTATATGGAACAGTTTCCAGGTAATTCCTCATCTCCTGTTGCGGCCTATGCAAAGCTGCTGCCATCAGCCGAAGTCACTGTAGGCCATGGAGTTGTTATGCCTGGAAACCGAGCTGCCCGGAGGATTGTTGTTGTTGTCACCAGGGTCAAGCAGGCCAGGATGCTTATTGCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

119

Amino Acids

12.81

Weight (kDa)

10.29

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21781
rosa_laevigata	RLG00000023602 RLG00000023603
rosa_multiflora	Rmu_sc0002555.1_g000003 Rmu_sc0017898.1_g000001 Rmu_sc0031020.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402660 Rroxscaffold_6G00402680
rosa_rugosa	Rorug03G0171500 Rorug03G0171500
rosa_samantha	Rh3BG255200 Rh3CG250900 Rh3CG251100 Rh3DG247300 Rh3DG247400
rosa_wichuraiana	Rw3G019970 Rw3G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 221
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjnI	CCWGG	4 cut(s)	196, 280, 320, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	2 cut(s)	235, 293
AluI	AGCT	2 cut(s)	235, 293
AoxI	GGCC	6 cut(s)	3, 112, 133, 222, 262, 333
ApeKI	GCWGC	3 cut(s)	235, 238, 293
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	222, 225, 280
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	4 cut(s)	198, 282, 322, 337
BcnI	CCSGG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	258
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	5 cut(s)	13, 222, 236, 239, 294
BlsI	GCNGC	5 cut(s)	14, 223, 237, 240, 295
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	5 cut(s)	198, 282, 298, 322, 337
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	5 cut(s)	198, 282, 298, 322, 337
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	130, 265, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	4 cut(s)	198, 282, 322, 337
BseDI	CCNNGG	3 cut(s)	130, 265, 321
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	222, 225, 280
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	6 cut(s)	5, 114, 135, 224, 264, 335
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	6 cut(s)	5, 114, 135, 224, 264, 335
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	2 cut(s)	13, 221
BspANI	GGCC	6 cut(s)	5, 114, 135, 224, 264, 335
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	130, 265, 321
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	4 cut(s)	198, 282, 322, 337
Bst4CI	ACNGT	4 cut(s)	77, 131, 192, 259
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	130, 265
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 227
BstNI	CCWGG	4 cut(s)	198, 282, 322, 337
BstSCI	CCNGG	5 cut(s)	196, 280, 296, 320, 335
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	222, 225, 280
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	6 cut(s)	5, 114, 135, 224, 264, 335
BtgI	CCRYGG	2 cut(s)	130, 265
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 73, 255
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	4 cut(s)	196, 280, 320, 335
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	269
FaiI	YATR	6 cut(s)	149, 183, 185, 228, 267, 278
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	5 cut(s)	13, 222, 236, 239, 294
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	5 cut(s)	13, 222, 236, 239, 294
GluI	GCNGC	5 cut(s)	13, 222, 236, 239, 294
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	5, 114, 135, 224, 264, 335
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	81, 162
HpyCH4III	ACNGT	4 cut(s)	77, 131, 192, 259
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 227
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	222, 225, 280
LweI	GCATC	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	98, 253, 316
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	22, 217, 294
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	5 cut(s)	198, 282, 298, 322, 337
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	4 cut(s)	198, 282, 322, 337
MwoI	GCNNNNNNNGC	2 cut(s)	47, 227
NciI	CCSGG	1 cut(s)	298
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	98, 253, 316
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	14, 223, 237, 240, 295
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	4 cut(s)	196, 280, 320, 335
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	4 cut(s)	196, 280, 320, 335
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	5 cut(s)	13, 222, 236, 239, 294
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	5 cut(s)	198, 282, 298, 322, 337
SetI	ASST	3 cut(s)	202, 237, 295
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	13, 221
StyD4I	CCNGG	5 cut(s)	196, 280, 296, 320, 335
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	4 cut(s)	77, 131, 192, 259
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	2 cut(s)	15, 224
TscAI	CASTG	3 cut(s)	43, 80, 262
TseFI	GTSAC	3 cut(s)	98, 253, 316
TseI	GCWGC	3 cut(s)	235, 238, 293
Tsp45I	GTSAC	3 cut(s)	98, 253, 316
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	43, 80, 262
XagI	CCTNNNNNAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.