FvH4_6g23590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016039
Physical Location & Seq
Forward (+)
17669217 .. 17669570
354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23590.t1

Sequence Viewer

Length: 354 bp
ATGAAGAACATGAGTACTATTCTAAAGGCAAGGCTGCTAGAGGATCAATTTCCACCACCACTAATGTGGGCAGGAGCGCCGCCTAAAGTAGCGGTGGACTCATCAAGTAGTAGTCGGTACACGCGTAGGTCCATTGAGACACTGGTTGTTGTTCTAGCAGTGATCATAATAGTGGGTGTTATTGCAGGGTTCTTTGCTCGATTATGTGGTGGAAGGCATCTTGGTGACAATGGTGAGTATGACATCGAAGGATGGGTGGAGAAGAAGTGCAGGAGTTGTATTGATGGTGGACTTCCACCACAACCTACACCTGCACAGCAGCCGAAGGCTGGAACAGAAGAAGCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.66

Weight (kDa)

8.88

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57500
fragaria_vesca FvH4_6g23590
malus_domestica MD14G1070500.v1.1
prunus_persica Prupe.7G063700_v2.0.a1
pyrus_communis pycom14g05990
rosa_chinensis RchiOBHm_Chr3g0481701
rosa_laevigata RLG00000023382
rosa_multiflora Rmu_sc0038587.1_g000001
rosa_roxburghii Rroxscaffold_6G00399860 Rroxscaffold_6G00400220
rosa_rugosa Rorug03G0193600
rosa_samantha Rh3BG279800 Rh3CG274800 Rh3DG271700
rosa_wichuraiana Rw3G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 124
AciI CCGC 2 cut(s) 80, 92
AclWI GGATC 1 cut(s) 51
AfaI GTAC 2 cut(s) 16, 119
AfiI CCNNNNNNNGG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 122
AleI CACNNNNGTG 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 34, 319
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 236, 245
AvaII GGWCC 1 cut(s) 129
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BbvI GCAGC 2 cut(s) 21, 331
BccI CCATC 2 cut(s) 246, 278
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 38, 155
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 35, 80, 320
BlsI GCNGC 3 cut(s) 36, 81, 321
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmsI GCATC 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 21, 331
BsgI GTGCAG 2 cut(s) 289, 297
Bsh1236I CGCG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 43, 162
BspACI CCGC 2 cut(s) 80, 92
BspFNI CGCG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 147
BssMI GATC 2 cut(s) 43, 162
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 46, 165
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 43, 162
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 21, 331
BstXI CCANNNNNNTGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 140, 165
BveI ACCTGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 15, 118
CviAII CATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 34, 322, 329
CviKI_1 RGCY 3 cut(s) 34, 322, 329
CviQI GTAC 2 cut(s) 15, 118
DpnI GATC 2 cut(s) 45, 164
DpnII GATC 2 cut(s) 43, 162
Eco47I GGWCC 1 cut(s) 129
FaeI CATG 1 cut(s) 13
FaiI YATR 4 cut(s) 11, 167, 205, 240
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 35, 80, 320
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 35, 80, 320
FspBI CTAG 2 cut(s) 38, 155
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 35, 80, 320
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 98
HphI GGTGA 2 cut(s) 236, 245
Hpy166II GTNNAC 3 cut(s) 97, 120, 290
Hpy8I GTNNAC 3 cut(s) 97, 120, 290
HpyAV CCTTC 3 cut(s) 207, 242, 319
HpyCH4V TGCA 3 cut(s) 185, 270, 314
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 43, 162
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 57, 128, 171, 256, 315, 324
Lsp1109I GCAGC 2 cut(s) 21, 331
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 38, 155
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 45, 164
MboI GATC 2 cut(s) 43, 162
MboII GAAGA 3 cut(s) 16, 274, 350
MluCI AATT 1 cut(s) 47
MluI ACGCGT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 1 cut(s) 34
MslI CAYNNNNRTG 3 cut(s) 64, 170, 222
MvnI CGCG 1 cut(s) 124
NdeII GATC 2 cut(s) 43, 162
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PkrI GCNGC 3 cut(s) 36, 81, 321
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 2 cut(s) 16, 119
RsaNI GTAC 2 cut(s) 15, 118
RseI CAYNNNNRTG 3 cut(s) 64, 170, 222
SatI GCNGC 3 cut(s) 35, 80, 320
Sau3AI GATC 2 cut(s) 43, 162
Sau96I GGNCC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 92
SetI ASST 3 cut(s) 131, 307, 313
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 3 cut(s) 64, 170, 222
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 80, 92
SspMI CTAG 2 cut(s) 38, 155
TaqI TCGA 2 cut(s) 199, 246
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 82
TscAI CASTG 2 cut(s) 147, 165
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 34, 319
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 147, 165
VpaK11BI GGWCC 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 2 cut(s) 63, 139
XspI CTAG 2 cut(s) 38, 155
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.