MD14G1070500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016039
Physical Location & Seq
Forward (+)
7764975 .. 7765331
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1070500.v1.1.491

Sequence Viewer

Length: 357 bp
ATGTTCATGTTGATGTTCATGGGGATTCCAAAGGCAAGGCTGCTAGACAATCAGCTTCCACCACCACAAATTTGGGCACCGCCGGCAATAGTGGTGGACGCAAGCAGTAGCAGCCGCTACACGCATACATCAATCGAGACACTGGTGGTGGTTTTGGCGGTGATCACGATAGTGGGTGTGATTGCAGGGATTGTAGCTCGGTTATGTGGTGGAAGGCATCTTGGTGCTGAGCATGATATTGAAGGATGGGTTGAGAGCAAGTGCAGGAGTTGTATTGATGGTGGAGTTCCACCGGAACCCTCCCCTGCAGCACCACAATCCAAGCCAGCTGCAGCAACGGAAGAAGCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.47

Weight (kDa)

6.26

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57500
fragaria_vesca FvH4_6g23590
malus_domestica MD14G1070500.v1.1
prunus_persica Prupe.7G063700_v2.0.a1
pyrus_communis pycom14g05990
rosa_chinensis RchiOBHm_Chr3g0481701
rosa_laevigata RLG00000023382
rosa_multiflora Rmu_sc0038587.1_g000001
rosa_roxburghii Rroxscaffold_6G00399860 Rroxscaffold_6G00400220
rosa_rugosa Rorug03G0193600
rosa_samantha Rh3BG279800 Rh3CG274800 Rh3DG271700
rosa_wichuraiana Rw3G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 3 cut(s) 80, 115, 158
AcsI RAATTY 1 cut(s) 69
AgsI TTSAA 1 cut(s) 242
AleI CACNNNNGTG 1 cut(s) 170
AluBI AGCT 3 cut(s) 55, 197, 329
AluI AGCT 3 cut(s) 55, 197, 329
Alw26I GTCTC 1 cut(s) 131
ApeKI GCWGC 5 cut(s) 40, 111, 308, 329, 332
ApoI RAATTY 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 5 cut(s) 27, 123, 316, 320, 344
BccI CCATC 2 cut(s) 240, 272
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 306, 330
BisI GCNGC 6 cut(s) 41, 112, 115, 309, 330, 333
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 6 cut(s) 42, 113, 116, 310, 331, 334
BmiI GGNNCC 2 cut(s) 78, 297
BmsI GCATC 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 5 cut(s) 27, 123, 316, 320, 344
BsgI GTGCAG 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 83, 293
BsmAI GTCTC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 3 cut(s) 80, 115, 158
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 78, 297
BspMAI CTGCAG 2 cut(s) 310, 334
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 84, 103, 327
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 83, 111
BstSFI CTRYAG 2 cut(s) 306, 330
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 5 cut(s) 27, 123, 316, 320, 344
BstXI CCANNNNNNTGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 84, 103, 327
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 3 cut(s) 7, 19, 233
CviJI RGCY 6 cut(s) 40, 55, 114, 197, 325, 329
CviKI_1 RGCY 6 cut(s) 40, 55, 114, 197, 325, 329
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
FaeI CATG 3 cut(s) 10, 22, 236
FaiI YATR 5 cut(s) 8, 20, 126, 205, 234
FatI CATG 3 cut(s) 6, 18, 232
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 6 cut(s) 41, 112, 115, 309, 330, 333
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 6 cut(s) 41, 112, 115, 309, 330, 333
FspBI CTAG 1 cut(s) 44
GluI GCNGC 6 cut(s) 41, 112, 115, 309, 330, 333
HapII CCGG 2 cut(s) 83, 293
HgaI GACGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 10, 22, 236
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 83, 293
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 136, 166
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 207, 236
HpyCH4V TGCA 4 cut(s) 185, 264, 308, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 111
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 10, 22, 236
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 96, 128, 171, 250, 306, 318, 339
Lsp1109I GCAGC 5 cut(s) 27, 123, 316, 320, 344
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 69
MnlI CCTC 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 82
MslI CAYNNNNRTG 3 cut(s) 11, 170, 222
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 2 cut(s) 83, 293
MwoI GCNNNNNNNGC 2 cut(s) 83, 111
NaeI GCCGGC 1 cut(s) 84
NdeII GATC 1 cut(s) 162
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 3 cut(s) 10, 22, 236
NlaIV GGNNCC 2 cut(s) 78, 297
OliI CACNNNNGTG 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 6 cut(s) 42, 113, 116, 310, 331, 334
PspN4I GGNNCC 2 cut(s) 78, 297
PstI CTGCAG 2 cut(s) 310, 334
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 3 cut(s) 11, 170, 222
SatI GCNGC 6 cut(s) 41, 112, 115, 309, 330, 333
Sau3AI GATC 1 cut(s) 162
SduI GDGCHC 1 cut(s) 79
SetI ASST 3 cut(s) 57, 199, 331
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 306, 330
SmiMI CAYNNNNRTG 3 cut(s) 11, 170, 222
Sse9I AATT 1 cut(s) 69
SsiI CCGC 3 cut(s) 80, 115, 158
SspMI CTAG 1 cut(s) 44
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 69
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 1 cut(s) 147
TseI GCWGC 5 cut(s) 40, 111, 308, 329, 332
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 147
XapI RAATTY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.