Rroxscaffold_6G00399860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016039
Physical Location & Seq
Reverse (-)
21876655 .. 21877011
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399860.1

Sequence Viewer

Length: 357 bp
ATGAAGATCATGAGGAGTATTCTAGAGGCAAGGCTGCTAGAGGATCAACTTCCACCACCACTAATGTGGGCAGGGGCGCCACCTAAAGTAGCGGTGGACTCATCAAGTAGTAGTCGGTACACACGTAGGTCGATTGAGACACTGGTGGTTGTTCTAGCAGTGATCACAATAGTGGGTGTCCTTGCAGGGTTCATTGCTCGATTATGTGGTGGAAGGCATCTTGGTGACAATGGTGAGTATGACATAGAAGGATGGGTGGAGAAGAAGTGCAGGAGTTGCATTGATGGTGGAGTTCCGCCACAACCTACACCTGCACCGCAGCCGAAGCCTCCAGCAACAGAGGAAGCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.73

Weight (kDa)

8.52

Isoelectric Point (pI)

73.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57500
fragaria_vesca FvH4_6g23590
malus_domestica MD14G1070500.v1.1
prunus_persica Prupe.7G063700_v2.0.a1
pyrus_communis pycom14g05990
rosa_chinensis RchiOBHm_Chr3g0481701
rosa_laevigata RLG00000023382
rosa_multiflora Rmu_sc0038587.1_g000001
rosa_roxburghii Rroxscaffold_6G00399860 Rroxscaffold_6G00400220
rosa_rugosa Rorug03G0193600
rosa_samantha Rh3BG279800 Rh3CG274800 Rh3DG271700
rosa_wichuraiana Rw3G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 3 cut(s) 92, 296, 317
AclWI GGATC 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 122
AleI CACNNNNGTG 2 cut(s) 64, 170
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 34, 319
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 236, 245
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 21, 331
BccI CCATC 2 cut(s) 246, 278
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 23, 38, 155
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 2 cut(s) 35, 320
BlsI GCNGC 2 cut(s) 36, 321
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 192
BseGI GGATG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 21, 331
BsgI GTGCAG 2 cut(s) 289, 297
BshNI GGYRCC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 6, 43, 162
BspACI CCGC 3 cut(s) 92, 296, 317
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 147
BssMI GATC 3 cut(s) 6, 43, 162
BssNI GRCGYC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 125
BstF5I GGATG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 9, 46, 165
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 6, 43, 162
BstMWI GCNNNNNNNGC 2 cut(s) 276, 325
BstV1I GCAGC 2 cut(s) 21, 331
BstXI CCANNNNNNTGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 140, 165
BveI ACCTGC 1 cut(s) 319
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 34, 322, 328
CviKI_1 RGCY 3 cut(s) 34, 322, 328
CviQI GTAC 1 cut(s) 118
DinI GGCGCC 1 cut(s) 78
DpnI GATC 3 cut(s) 8, 45, 164
DpnII GATC 3 cut(s) 6, 43, 162
EciI GGCGGA 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
FaeI CATG 1 cut(s) 13
FaiI YATR 4 cut(s) 11, 205, 240, 245
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 35, 320
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 35, 320
FspBI CTAG 3 cut(s) 23, 38, 155
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 35, 320
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 98
HphI GGTGA 2 cut(s) 236, 245
Hpy166II GTNNAC 2 cut(s) 97, 120
Hpy188III TCNNGA 2 cut(s) 10, 23
Hpy8I GTNNAC 2 cut(s) 97, 120
HpyAV CCTTC 2 cut(s) 207, 242
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 185, 270, 279, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 325
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 6, 43, 162
LpnPI CCDG 6 cut(s) 57, 128, 171, 256, 324, 345
Lsp1109I GCAGC 2 cut(s) 21, 331
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 23, 38, 155
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 8, 45, 164
MboI GATC 3 cut(s) 6, 43, 162
MboII GAAGA 2 cut(s) 16, 274
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 5 cut(s) 6, 19, 34, 334, 339
MslI CAYNNNNRTG 3 cut(s) 64, 170, 222
MwoI GCNNNNNNNGC 2 cut(s) 276, 325
NarI GGCGCC 1 cut(s) 77
NdeII GATC 3 cut(s) 6, 43, 162
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 224
OliI CACNNNNGTG 2 cut(s) 64, 170
PagI TCATGA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PkrI GCNGC 2 cut(s) 36, 321
PleI GAGTC 1 cut(s) 92
PluTI GGCGCC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 3 cut(s) 64, 170, 222
SatI GCNGC 2 cut(s) 35, 320
Sau3AI GATC 3 cut(s) 6, 43, 162
SchI GAGTC 1 cut(s) 92
SetI ASST 5 cut(s) 85, 127, 131, 307, 313
SfaNI GCATC 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 78
SmiMI CAYNNNNRTG 3 cut(s) 64, 170, 222
SsiI CCGC 3 cut(s) 92, 296, 317
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 3 cut(s) 23, 38, 155
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 131, 199
TscAI CASTG 2 cut(s) 147, 165
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 34, 319
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 17, 181
TspRI CASTG 2 cut(s) 147, 165
XbaI TCTAGA 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XspI CTAG 3 cut(s) 23, 38, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.