Prupe.7G063700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016039
Physical Location & Seq
Reverse (-)
10245820 .. 10246131
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G063700.1

Sequence Viewer

Length: 312 bp
ATGGGGACTCTTCCACAGTCACAAGTTGGGGCGCCGCCGGTGGTAGTGGTGGACTCAAAGACTAGTTCACGGTACACGCATCGATCCATTGAGACACTGGTGGTGGTTTTGGCAGTGATCACACTAGTAGGTGTCATTGCAGGGATTGTAGCTCGGCTATGTGGTGGAAGGCATCTTGGTGGCAGTGGTGAGCATGACATAGAAGGATGGGTTGAGAGCAAGTGTAGGAGTTGCATTGATGGTGGAGTTCCACCAGAACCCTCCCCTCCACAACAGGCCAAGCCTGCAGCAACAGAAGAAGCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.67

Weight (kDa)

6.81

Isoelectric Point (pI)

73.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57500
fragaria_vesca FvH4_6g23590
malus_domestica MD14G1070500.v1.1
prunus_persica Prupe.7G063700_v2.0.a1
pyrus_communis pycom14g05990
rosa_chinensis RchiOBHm_Chr3g0481701
rosa_laevigata RLG00000023382
rosa_multiflora Rmu_sc0038587.1_g000001
rosa_roxburghii Rroxscaffold_6G00399860 Rroxscaffold_6G00400220
rosa_rugosa Rorug03G0193600
rosa_samantha Rh3BG279800 Rh3CG274800 Rh3DG271700
rosa_wichuraiana Rw3G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 74
AhlI ACTAGT 2 cut(s) 62, 124
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 201, 233
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 86
BcuI ACTAGT 2 cut(s) 62, 124
BfaI CTAG 2 cut(s) 63, 125
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 2 cut(s) 35, 288
BlsI GCNGC 2 cut(s) 36, 289
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 2 cut(s) 88, 181
Bsa29I ATCGAT 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 82
BseGI GGATG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 82
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 83, 117
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 2 cut(s) 83, 117
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 18, 72
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 285
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 86, 120
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 83, 117
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 2 cut(s) 120, 190
BtsIMutI CAGTG 3 cut(s) 95, 120, 190
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 152, 157, 278, 283
CviKI_1 RGCY 4 cut(s) 152, 157, 278, 283
CviQI GTAC 1 cut(s) 73
DinI GGCGCC 1 cut(s) 33
DpnI GATC 2 cut(s) 85, 119
DpnII GATC 2 cut(s) 83, 117
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 160, 195, 200
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 35, 288
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 35, 288
FspBI CTAG 2 cut(s) 63, 125
GlaI GCGC 1 cut(s) 33
GluI GCNGC 2 cut(s) 35, 288
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 7, 53
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 52, 68, 75
Hpy8I GTNNAC 3 cut(s) 52, 68, 75
HpyAV CCTTC 2 cut(s) 162, 197
HpyCH4III ACNGT 2 cut(s) 18, 72
HpyCH4V TGCA 3 cut(s) 140, 234, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 32
KasI GGCGCC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 83, 117
LpnPI CCDG 6 cut(s) 51, 83, 126, 260, 267, 297
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 88, 181
MaeI CTAG 2 cut(s) 63, 125
MaeIII GTNAC 1 cut(s) 18
MalI GATC 2 cut(s) 85, 119
MboI GATC 2 cut(s) 83, 117
MboII GAAGA 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 2 cut(s) 271, 276
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 284
NarI GGCGCC 1 cut(s) 32
NdeII GATC 2 cut(s) 83, 117
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 36, 289
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 289
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 177
SatI GCNGC 2 cut(s) 35, 288
Sau3AI GATC 2 cut(s) 83, 117
SchI GAGTC 1 cut(s) 47
SetI ASST 2 cut(s) 133, 154
SfaNI GCATC 2 cut(s) 88, 181
SfcI CTRYAG 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 33
SgrAI CRCCGGYG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 177
SpeI ACTAGT 2 cut(s) 62, 124
SsiI CCGC 1 cut(s) 35
SspDI GGCGCC 1 cut(s) 31
SspMI CTAG 2 cut(s) 63, 125
TaaI ACNGT 2 cut(s) 18, 72
TaqI TCGA 1 cut(s) 82
TauI GCSGC 1 cut(s) 37
TscAI CASTG 3 cut(s) 102, 120, 190
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 18
TspRI CASTG 3 cut(s) 102, 120, 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 2 cut(s) 63, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.