Rorug03G0193600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016039
Physical Location & Seq
Reverse (-)
17004843 .. 17006927
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0193600.1

Sequence Viewer

Length: 2085 bp
ATGAGTATTCAACCCTTGCGCCGTTTTGGCGGCCAAATTCTGAAAGAGGAGTCGACCACCTTGGCGCAAGTGATCCAAACCTACGCAAAAACCAAGCAGCTAAACAAAGGCAAAGAGCTCCATTCTCACCTCCTACGCACTCATTACCCACTATGCATTTTCCTCACCAACCACCTCCTCAACATGTACTCCAAATGTGGCCACGTCCATTATGCCCTCAAGGTTTTCGACCAAATGCCTCACCGAAACTTGGTTTCCTGGACTGCAATGGTCACTGGGTTTTCTCAGAACTTGAGGTTCTCGGACAGTTTCAAGGCCTTTTCCCAGATGAGAAGTGCTGGGGAGAGCCCGACCCAGTTTGCATTTGCAAGTGTCATCAGAGCTTGTGTGGTTCTTGGGTCGGTTGAGATTGGGAGGCAGCTGCATTCTCTTGCTTTGAAATTGGGCTTGGCTTGTGAGTTGTTTGTGGGTAGTAACTTGGCGGATATGTATTCGAAATGTGGGTTCATGGTTGAGGCTTGTAAGGTTTTCGAGGAAATGCCGAGTAAGGATGCTGTGTCGTGGACTTCGATGATTGATGGGTATGCAAAGAGTGGGGATTTTGAGGCAGCTTTACTGAGTTATCACAGGATGATCAATGATGGGATTGGAGTAGATAAATATGTTGTTTCTAGTGCATTGAGTGCTTGTTCTGCACTGAAGGCTTGTCAGTTTGGGAAGTGTGTTCATTCGACGGTTGTGAAGTTAGGATTGGAAGTAGAAGTTGCTGTGGGAAATGCTCTGGTTGATATGTACTCGAAATCAGGTGATATGGAGAGTGCTTTAAATGTGTTTCGGGTTGACCCTGAGTGCAGAAATATTGTTTCGTATTCCTCTCTGATCAATGGTTATGTTGAGATGGATGAAATCGAGAAGGCTTTTAGTGTGTTTGTTGACTTACAGAGAAGGGGAGCTGAGCCTAATCAGTTCACTTTCTCTAGCTTGATCAAGGCTTGTGCCAAGCAAGCTGCACTTGAACAAGGGATCCAACTTCATGCTCAGGTGGTCAAGTTTAATTTTGATAGAGACGATTTTGTGTCTTCTGTTCTTGTTGATATGTATGGGAAATGTGGATTACTTGATCATTCAATACAAGTTTTTGACGAGGTAGCCACCCCGACTGAAGTTGCATGGAATTCATTGCTAAGTATATTTGCAGTTCATGGCTTAGGAAATGACGCCTTGAAAACTTTTAGTAGAATGGTCCAGGCAGGAGTGAAACCAAATGCAATAACATTTATCAGTCTTTTAACAGGTTGTAGCCATTCTGGATTGGTAGAGGAAGGTTTAAAGTACTTTTACTCTATGGAGAAAACATATGGCATAGTACCTAGAGCTGGACATTACTCTTGCGTTATTGATTTACTTGGCAGGGCTGGAAGGCTTGAAGAGGCCGAAGAATTCATTAACAGCATGCCAATGCAGCCAAATGCTTTTGGATGGTGCTCTTTTCTTGGCGCTTGCACAATTCATGGTGATAAAGAGAGGGGCAAACTGGCAGCGGAGAAATTGATACAGCTTGAACCTGAGAATAGTGGAGCACATGTGTTGCTTTCAACTATATATGCAAAGGAGCAAGAATGGGAAGATTTCAGGGGTGTGAGGAAGATAATGAGGGATAGCAGCATGAGGAAATTGCCCGGTTATAGTTGGGTTGACATTGGAAACAAAACACACACGTTTGGAGCCGAAGATTGGTCTCATCCTCAGAAGAAAGAAATATATGAGAAACTTGATAGTCTTCTTGATCAGATAAAGAAAGCTGGATATGTTCCAAATACAGATCTTGTTCTTCATGATATGGACGACAATTCAAAGGTAGAGCTTCTTCACCATCATAGTGAGAGGATAGCGATTGCATTTGCACTGATAAGTATGCCTGCTGGGAAGCCAATCATTGTGAAGAAAAATATAAGGGTGTGCTTGGATTGCCATTCTGCAATCAAGTACATCTCCTTAGTTGTTGGAAGAAAGATTATTGTTAGAGATAATACTCGGTTTCACCATTTCGCAGATGGGTTGTGTTCATGTGGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

694

Amino Acids

77.32

Weight (kDa)

6.81

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 184 - 230 1.7e-06 PPR repeat family
PPR PF01535 186 - 216 5.6e-07 PPR repeat
PPR_long PF17177 191 - 336 5.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 285 - 334 1.9e-14 PPR repeat family
PPR_2 PF13041 386 - 434 8.5e-11 PPR repeat family
E_motif PF20431 504 - 566 1.8e-17 E motif
Eplus_motif PF20430 571 - 598 1.5e-09 E+ motif
DYW_deaminase PF14432 602 - 694 1.4e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57500
fragaria_vesca FvH4_6g23590
malus_domestica MD14G1070500.v1.1
prunus_persica Prupe.7G063700_v2.0.a1
pyrus_communis pycom14g05990
rosa_chinensis RchiOBHm_Chr3g0481701
rosa_laevigata RLG00000023382
rosa_multiflora Rmu_sc0038587.1_g000001
rosa_roxburghii Rroxscaffold_6G00399860 Rroxscaffold_6G00400220
rosa_rugosa Rorug03G0193600
rosa_samantha Rh3BG279800 Rh3CG274800 Rh3DG271700
rosa_wichuraiana Rw3G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AciI CCGC 3 cut(s) 30, 482, 1541
AclWI GGATC 3 cut(s) 67, 1018, 1031
AcoI YGGCCR 2 cut(s) 31, 199
AcsI RAATTY 3 cut(s) 36, 1174, 1439
AcuI CTGAAG 2 cut(s) 719, 1182
AcyI GRCGYC 1 cut(s) 1218
AfaI GTAC 5 cut(s) 188, 794, 1334, 1368, 1988
AfiI CCNNNNNNNGG 3 cut(s) 250, 1376, 1734
AflIII ACRYGT 3 cut(s) 183, 1582, 1716
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 257, 1245
AjuI GAANNNNNNNTTGG 4 cut(s) 431, 463, 734, 766
AloI GAACNNNNNNTCC 2 cut(s) 1008, 1040
Alw21I GWGCWC 3 cut(s) 120, 1487, 1582
Alw26I GTCTC 2 cut(s) 1059, 1743
AlwI GGATC 3 cut(s) 67, 1018, 1031
AoxI GGCC 4 cut(s) 31, 199, 315, 1431
ApeKI GCWGC 8 cut(s) 97, 418, 421, 608, 1007, 1462, 1538, 1662
ApoI RAATTY 3 cut(s) 36, 1174, 1439
AspLEI GCGC 3 cut(s) 21, 67, 1499
AspS9I GGNCC 1 cut(s) 1243
AsuC2I CCSGG 1 cut(s) 1680
AsuHPI GGTGA 7 cut(s) 119, 157, 233, 818, 1526, 1862, 2033
AsuII TTCGAA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 1243
BalI TGGCCA 1 cut(s) 201
BamHI GGATCC 1 cut(s) 1023
BanII GRGCYC 2 cut(s) 120, 350
BarI GAAGNNNNNNTAC 2 cut(s) 1851, 1883
BbsI GAAGAC 2 cut(s) 1071, 1772
Bbv12I GWGCWC 3 cut(s) 120, 1487, 1582
BbvI GCAGC 8 cut(s) 109, 408, 430, 620, 994, 1474, 1550, 1674
BccI CCATC 6 cut(s) 572, 635, 892, 1473, 1881, 2048
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 259, 1247
BclI TGATCA 5 cut(s) 633, 879, 984, 1120, 1786
BcnI CCSGG 1 cut(s) 1680
BcoDI GTCTC 2 cut(s) 1059, 1743
BfaI CTAG 3 cut(s) 672, 978, 1371
BfoI RGCGCY 1 cut(s) 1500
BglI GCCNNNNNGGC 1 cut(s) 27
BglII AGATCT 1 cut(s) 1822
BisI GCNGC 9 cut(s) 31, 98, 419, 422, 609, 1008, 1463, 1539, 1663
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 9 cut(s) 32, 99, 420, 423, 610, 1009, 1464, 1540, 1664
BmcAI AGTACT 1 cut(s) 1334
Bme1390I CCNGG 3 cut(s) 259, 1247, 1680
Bme18I GGWCC 1 cut(s) 1243
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 1243
BmiI GGNNCC 2 cut(s) 1025, 1726
BmrFI CCNGG 3 cut(s) 259, 1247, 1680
BmrI ACTGGG 2 cut(s) 285, 349
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 2 cut(s) 285, 349
BpiI GAAGAC 2 cut(s) 1071, 1772
Bpu10I CCTNAGC 2 cut(s) 1038, 1207
Bpu1102I GCTNAGC 1 cut(s) 954
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 2 cut(s) 203, 313
BpuMI CCSGG 1 cut(s) 1680
BsaHI GRCGYC 1 cut(s) 1218
BsaI GGTCTC 1 cut(s) 1743
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 1569, 1599
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 1376, 1734
Bse1I ACTGG 4 cut(s) 280, 355, 1539, 2084
Bse3DI GCAATG 2 cut(s) 273, 1178
BseBI CCWGG 2 cut(s) 259, 1247
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 5 cut(s) 556, 636, 907, 1484, 1741
BseLI CCNNNNNNNGG 3 cut(s) 250, 1376, 1734
BseMI GCAATG 2 cut(s) 273, 1178
BseMII CTCAG 7 cut(s) 299, 608, 837, 945, 1052, 1557, 1760
BseNI ACTGG 4 cut(s) 280, 355, 1539, 2084
BseRI GAGGAG 2 cut(s) 62, 167
BseXI GCAGC 8 cut(s) 109, 408, 430, 620, 994, 1474, 1550, 1674
BseYI CCCAGC 2 cut(s) 338, 1922
BsgI GTGCAG 3 cut(s) 678, 871, 993
BshFI GGCC 4 cut(s) 33, 201, 317, 1433
BsiHKAI GWGCWC 3 cut(s) 120, 1487, 1582
BsiSI CCGG 1 cut(s) 1680
BslI CCNNNNNNNGG 3 cut(s) 250, 1376, 1734
BsmAI GTCTC 2 cut(s) 1059, 1743
BsmBI CGTCTC 1 cut(s) 1059
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 4 cut(s) 33, 201, 317, 1433
Bso31I GGTCTC 1 cut(s) 1743
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 4 cut(s) 120, 350, 1487, 1582
Bsp143I GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
Bsp1720I GCTNAGC 1 cut(s) 954
BspACI CCGC 3 cut(s) 30, 482, 1541
BspANI GGCC 4 cut(s) 33, 201, 317, 1433
BspCNI CTCAG 7 cut(s) 298, 609, 838, 946, 1051, 1558, 1759
BspHI TCATGA 1 cut(s) 1834
BspLI GGNNCC 2 cut(s) 1025, 1726
BspPI GGATC 3 cut(s) 67, 1018, 1031
BspT104I TTCGAA 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 1743
BsrDI GCAATG 2 cut(s) 273, 1178
BsrI ACTGG 4 cut(s) 280, 355, 1539, 2084
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
BssNI GRCGYC 1 cut(s) 1218
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 259, 1247
Bst4CI ACNGT 2 cut(s) 308, 736
Bst6I CTCTTC 1 cut(s) 1422
BstACI GRCGYC 1 cut(s) 1218
BstAPI GCANNNNNTGC 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 4 cut(s) 1005, 1454, 1501, 1920
BstF5I GGATG 5 cut(s) 556, 636, 907, 1484, 1741
BstH2I RGCGCY 1 cut(s) 1500
BstHHI GCGC 3 cut(s) 21, 67, 1499
BstKTI GATC 8 cut(s) 75, 636, 882, 987, 1026, 1123, 1789, 1825
BstMAI GTCTC 2 cut(s) 1059, 1743
BstMBI GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
BstMWI GCNNNNNNNGC 7 cut(s) 27, 683, 692, 701, 1004, 1462, 1968
BstNI CCWGG 2 cut(s) 259, 1247
BstNSI RCATGY 3 cut(s) 187, 1456, 1586
BstSCI CCNGG 3 cut(s) 257, 1245, 1678
BstV1I GCAGC 8 cut(s) 109, 408, 430, 620, 994, 1474, 1550, 1674
BstV2I GAAGAC 2 cut(s) 1071, 1772
BstX2I RGATCY 2 cut(s) 1023, 1822
BstYI RGATCY 2 cut(s) 1023, 1822
BsuRI GGCC 4 cut(s) 33, 201, 317, 1433
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 5 cut(s) 556, 636, 907, 1484, 1741
BtsIMutI CAGTG 3 cut(s) 273, 695, 1904
Cac8I GCNNGC 4 cut(s) 1005, 1454, 1501, 1920
CciI TCATGA 1 cut(s) 1834
CfoI GCGC 3 cut(s) 21, 67, 1499
Cfr13I GGNCC 1 cut(s) 1243
CseI GACGC 1 cut(s) 1226
Csp6I GTAC 5 cut(s) 187, 793, 1333, 1367, 1987
CviQI GTAC 5 cut(s) 187, 793, 1333, 1367, 1987
DpnI GATC 8 cut(s) 74, 635, 881, 986, 1025, 1122, 1788, 1824
DpnII GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
DraI TTTAAA 2 cut(s) 825, 1329
EaeI YGGCCR 2 cut(s) 31, 199
Eam1104I CTCTTC 1 cut(s) 1422
EarI CTCTTC 1 cut(s) 1422
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 2 cut(s) 120, 350
Eco31I GGTCTC 1 cut(s) 1743
Eco47I GGWCC 1 cut(s) 1243
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 719, 1182
EcoICRI GAGCTC 1 cut(s) 118
EcoRI GAATTC 2 cut(s) 1174, 1439
EcoRII CCWGG 2 cut(s) 257, 1245
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 158
EcoT38I GRGCYC 2 cut(s) 120, 350
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 1059
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 5 cut(s) 633, 879, 984, 1120, 1786
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 9 cut(s) 31, 98, 419, 422, 609, 1008, 1463, 1539, 1663
FokI GGATG 5 cut(s) 563, 643, 914, 1491, 1728
FriOI GRGCYC 2 cut(s) 120, 350
Fsp4HI GCNGC 9 cut(s) 31, 98, 419, 422, 609, 1008, 1463, 1539, 1663
FspBI CTAG 3 cut(s) 672, 978, 1371
GlaI GCGC 3 cut(s) 20, 66, 1498
GluI GCNGC 9 cut(s) 31, 98, 419, 422, 609, 1008, 1463, 1539, 1663
GsaI CCCAGC 2 cut(s) 342, 1926
HaeII RGCGCY 1 cut(s) 1500
HaeIII GGCC 4 cut(s) 33, 201, 317, 1433
HapII CCGG 1 cut(s) 1680
HgaI GACGC 1 cut(s) 1226
HhaI GCGC 3 cut(s) 21, 67, 1499
Hin1I GRCGYC 1 cut(s) 1218
Hin6I GCGC 3 cut(s) 19, 65, 1497
HinP1I GCGC 3 cut(s) 19, 65, 1497
HincII GTYRAC 4 cut(s) 54, 841, 934, 1696
HindII GTYRAC 4 cut(s) 54, 841, 934, 1696
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 1680
HphI GGTGA 7 cut(s) 119, 157, 233, 818, 1526, 1862, 2033
Hpy166II GTNNAC 6 cut(s) 54, 564, 841, 934, 969, 1696
Hpy188I TCNGA 7 cut(s) 42, 288, 304, 380, 879, 1749, 1791
Hpy188III TCNNGA 4 cut(s) 910, 1308, 1784, 1835
Hpy8I GTNNAC 6 cut(s) 54, 564, 841, 934, 969, 1696
Hpy99I CGWCG 1 cut(s) 736
HpyAV CCTTC 5 cut(s) 694, 907, 939, 1316, 1413
HpyCH4III ACNGT 2 cut(s) 308, 736
HpyCH4IV ACGT 2 cut(s) 204, 1718
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 683, 692, 701, 1004, 1462, 1968
HpySE526I ACGT 2 cut(s) 204, 1718
Hsp92I GRCGYC 1 cut(s) 1218
HspAI GCGC 3 cut(s) 19, 65, 1497
Ksp22I TGATCA 5 cut(s) 633, 879, 984, 1120, 1786
Kzo9I GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
LmnI GCTCC 5 cut(s) 123, 950, 1577, 1612, 1724
Lsp1109I GCAGC 8 cut(s) 109, 408, 430, 620, 994, 1474, 1550, 1674
LweI GCATC 1 cut(s) 541
MaeI CTAG 3 cut(s) 672, 978, 1371
MaeII ACGT 2 cut(s) 204, 1718
MaeIII GTNAC 2 cut(s) 271, 473
MalI GATC 8 cut(s) 74, 635, 881, 986, 1025, 1122, 1788, 1824
MboI GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
MflI RGATCY 2 cut(s) 1023, 1822
MhlI GDGCHC 4 cut(s) 120, 350, 1487, 1582
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 9 cut(s) 36, 440, 1054, 1174, 1439, 1506, 1547, 1673, 1849
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 1051, 1984
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 158
MscI TGGCCA 1 cut(s) 201
MseI TTAA 5 cut(s) 824, 1053, 1289, 1328, 1446
MslI CAYNNNNRTG 2 cut(s) 1457, 1878
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 2 cut(s) 421, 1541
MspI CCGG 1 cut(s) 1680
MspR9I CCNGG 3 cut(s) 259, 1247, 1680
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 2 cut(s) 259, 1247
MwoI GCNNNNNNNGC 7 cut(s) 27, 683, 692, 701, 1004, 1462, 1968
NciI CCSGG 1 cut(s) 1680
NdeI CATATG 1 cut(s) 1357
NdeII GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
NlaIV GGNNCC 2 cut(s) 1025, 1726
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 158
NspI RCATGY 3 cut(s) 187, 1456, 1586
NspV TTCGAA 1 cut(s) 494
PaeI GCATGC 1 cut(s) 1456
PagI TCATGA 1 cut(s) 1834
PceI AGGCCT 1 cut(s) 317
PciI ACATGT 2 cut(s) 183, 1582
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PctI GAATGC 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 9 cut(s) 32, 99, 420, 423, 610, 1009, 1464, 1540, 1664
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 2 cut(s) 183, 1582
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 257, 1245
PspFI CCCAGC 2 cut(s) 338, 1922
PspGI CCWGG 2 cut(s) 257, 1245
PspN4I GGNNCC 2 cut(s) 1025, 1726
PspPI GGNCC 1 cut(s) 1243
PsuI RGATCY 2 cut(s) 1023, 1822
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 5 cut(s) 188, 794, 1334, 1368, 1988
RsaNI GTAC 5 cut(s) 187, 793, 1333, 1367, 1987
RseI CAYNNNNRTG 2 cut(s) 1457, 1878
SacI GAGCTC 1 cut(s) 120
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 5 cut(s) 824, 1053, 1289, 1328, 1446
SatI GCNGC 9 cut(s) 31, 98, 419, 422, 609, 1008, 1463, 1539, 1663
Sau3AI GATC 8 cut(s) 72, 633, 879, 984, 1023, 1120, 1786, 1822
Sau96I GGNCC 1 cut(s) 1243
ScaI AGTACT 1 cut(s) 1334
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 259, 1247, 1680
SduI GDGCHC 4 cut(s) 120, 350, 1487, 1582
SfaNI GCATC 1 cut(s) 541
SfuI TTCGAA 1 cut(s) 494
SinI GGWCC 1 cut(s) 1243
SmiMI CAYNNNNRTG 2 cut(s) 1457, 1878
SmlI CTYRAG 2 cut(s) 218, 292
SmoI CTYRAG 2 cut(s) 218, 292
SphI GCATGC 1 cut(s) 1456
Sse9I AATT 9 cut(s) 36, 440, 1054, 1174, 1439, 1506, 1547, 1673, 1849
SseBI AGGCCT 1 cut(s) 317
SsiI CCGC 3 cut(s) 30, 482, 1541
SspI AATATT 1 cut(s) 859
SspMI CTAG 3 cut(s) 672, 978, 1371
SstI GAGCTC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 257, 1245, 1678
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 308, 736
TaiI ACGT 2 cut(s) 207, 1721
TaqI TCGA 8 cut(s) 53, 228, 494, 531, 569, 731, 797, 909
TasI AATT 9 cut(s) 36, 440, 1054, 1174, 1439, 1506, 1547, 1673, 1849
TatI WGTACW 4 cut(s) 186, 792, 1332, 1986
TauI GCSGC 1 cut(s) 33
Tru1I TTAA 5 cut(s) 824, 1053, 1289, 1328, 1446
Tru9I TTAA 5 cut(s) 824, 1053, 1289, 1328, 1446
TscAI CASTG 3 cut(s) 280, 702, 1911
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 8 cut(s) 97, 418, 421, 608, 1007, 1462, 1538, 1662
Tsp45I GTSAC 1 cut(s) 271
TspRI CASTG 3 cut(s) 280, 702, 1911
VpaK11BI GGWCC 1 cut(s) 1243
XapI RAATTY 3 cut(s) 36, 1174, 1439
XceI RCATGY 3 cut(s) 187, 1456, 1586
XcmI CCANNNNNNNNNTGG 1 cut(s) 2051
XmiI GTMKAC 1 cut(s) 53
XspI CTAG 3 cut(s) 672, 978, 1371
ZrmI AGTACT 1 cut(s) 1334
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.