FvH4_6g24030

RRP12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011076
Physical Location & Seq
Forward (+)
18048095 .. 18057906
9812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24030.t3

Sequence Viewer

Length: 3450 bp
ATGGAGGACGCAGTAGAGGAGTTGAAAGATGGCGCAGACATCTCCCAACAGCTCATGGACCGCTACTCCAAGTCCTCTGCCCCGCAGCACCACCACCTCCTCGCCACCGCCGCCGCAATGCGCTCCATCCTCGCCGCCGAGTCCCTCCCCCTCACTCCCCCTTCCTACTTCGCCGCCACCATCTCCGCCATCGACGACATGTCGTCCCCCGACCCTACCGCCGTAGCCGCGCTCCTCTCGTTTCTCTCCCTGGTGCTCCCGCTCGTGCCGCCACGTAGCATCTCGTCGCCCAAGGCCGGTCAGGCGCTGGCTATGCTGGTGGAGCTTCTGGAGCGAGAGGCGGAGAGGCTGACCATGACCGGCGTCAAGGCTGTGGTCAAGTGCTTGGGGGCTTTGGTTGGCTTCTGTGATTTGGAGGATTGGGATTCTCTCAAATTGGGGCTTCACACTTTGCTCAAGTTCTCCGTTGATAAGAGACCTAAGGTTCGCAAATGTTCGCAAGACTGTCTCGAGAATGTATTTAAGTCGCTCCAGTCCCGCAGTGTTGTCAAGGAGGCGAGCAAGTTGATACTTTCTATGCTGAAAGGTTATATGCCTTTGGCGGTTAAGTTAAGTGCTTCTCGGACTTCAGATGGATCTAAAAATCTGGATGTCCTGCACATGCTAAATGTAGTGAAGCTTACTGTTCCCTTTCTCTCACCAATTGTCAGCTCAAAACTTCTTTCAGAGATGAATAAACTTCTGGGTCCGCGGTTCTCCGAACTCACAAGGCATGTTTTCCAAATTATTGAAGCGATTTTCAAGATATCAAAAGCTGATGACGTTGTCCCAAAGACGGAGGGGACTATAGCTTCTCTCATTTCATACGTGTCCTTGGCAAATAAGAACCCTTCGGACACTGTCATGTCTGCAACAACCTTGTTAAAATATTCTATGGGCATACTTCATACTGGTGAATCTACATCATGGATCACGAATCTTCCGCTAGTTTGTGGCTCTGTGGCAGGTCTTTTGATTTCTGAGGCTAGGACTGCATCCCATTCTTCAGATATTTTGAAAGAGTTGATTAGCCAACATGTGGATCTAAGTATGTTGGTCAATGAAAACCAACCTTTCAAAGATGAAGGAGATGATATTATAAAATCAAATGCATTGAGATCAATATGTGCTATTTTTGAGGAGGGTCTTAACTCATGTAAAGGACTGCCCAACGAGCATCTTTTGGATGTTATATCTGCTTTGTTCCTCAAGCTCGGAAAAATGTCCAGTATTTATATAAGAGGTATTATACTGAAACTTGCTGAGTTGATGACCACTGCTAGTGGGGACAAATCTAACACTGACCATCTTCAGAAATGTATTGGAACTGCTGTAATTGCTATGGGGCCTGAGAGACTACTAGAACTTGTACCTGTATCACTTAATGCTGGTGACTTCACATGTGTAAACAATTGGCTGGTACCTATTTTGAAAAATTATGTTGTTGGAGCATCGTTGGCATACTATATGGACCAGATTATGCCTCTTGCTAAATCCTTTCAACTGGCCAGCAGTAAAGTTAAAAAGTCTAAAACCCGTGAAGATCTACAGGGTCATGCACGTGATTTGTGGGGACTGCTACTTTCTTTTTGTCGCCATCCAACTGATATGTACCAAAATTTTGTCCCTCTGGCTGAGGTTATAGTAACATTTCTAAAGGAGGATTCTTTAATGCATGAAACTGTTGCATGTTCCTTGCAGGCTCTTGTAAATCAGAACAAAAGTGTGGTTAACCAAAAAACTGGTGCTGGTGGTGCAGTTACCGATCCTGTACCAGAGTTGGGAAACATACCCACTTATTCAAAGAAAACTGCAACAAAAAACATAAAGGCTGTGGCACAGTGTTCTGCTGAGTTGCTTCAGGCTCTTATAGACTCATTTATTGGTTCAGCACCTGAGAAGCGTTCATATTTAAAGGATGCTATTAGATGCCTGGCTTCAGTAGCTGATTCTTCTATTGCCAAGAAGATTTTCATATCAGTACTTAAGAAGTTTCACCTGATGGATGGTAGGAATGAATTTATAAAGTTGGACAGTTATACTAATTCAATGGGCATTGAAGAAGAGCACAATCAAAGTACTAGAGAGAATAATGCACAGCGATGTGTAATAATGGAATTAGCTTCTTCTCTAGTTGAAGGAGCCCAGGAAGATCTTATTGATCTAATCTATACCTTTATCAAACACACTTTTCAGGCCAGCGAGGAGGTTGCGAATCGTGAAGCATACTATACTTTGAGCAGAATTCTAGAGGAACATGCTTTGTTCTGTTCTTCCCGCTCTATTGAATTGATTGATCTGTTACTTGGGTTGAAATGTCCTGGTGATACTGTATCTCTAAGGAGTCGATTTGCTTGTTTCCAGACTTTAATGATTCATACTTTGAAGATAGACTCAGAGGTGGAAAATGCAAAGGCTTTTCTTATTCTGAATGAGATCATAGTCACGTTGAAGGATTCCCACGAAGAGAAAGCTAGGAAAACAGCCTATGATATACTCCTCAACATAAGATCTAGTTTGAGAGACTCGTCATGTCTCAGTTCAGACGGACCTTACCAGAAACTAATTAACATGATAATGGGATATCTTTCCAGTGCATCACCTCACATAAAGAGTGGAGCAGTGTCTGTGCTATCTGTTCTGGTGTATAAAGATACTGATATTTGCCTTTCAATACCTGAGCTTGTGCCTTCTCTTTTATCTTTGCTGCAAGGCAAAGCTCTCGAAGTCATCAAAGCTGTATTGGGCTTTTTCAAAGTACTGGTATCTTGCTTAGAGACTAGGCATCTGCAAAATCTTCTACCAGCTATTGTCACAGCGGTTCTCCCCTGGTCCCCTGTCTCGAGACATCATTTCAGAGAAAAGGTCACAGTCATCATGGAGATTATGTTAAGGAAGTGTGGTTCTCCTGCAGTTGAGTTAGTTACACCAGATAAATACAAAGGTTTTGTCAAGGGTATTCTGGAGAACCGCCGCGATGGCAAGAAAAGTTCCAAGGAAGTTGCCACCACAGAAACAGATATGGAGCAGGCAGATTCTTCAACCAACAGGATGGAGAATAGAAAACGCAAGGAATTGGATTTTCCAGAGAAAAATGGATCAATGGAACACAGGAAAAGAAAAAGGGTGAAGGAACACATAAATGGAAAGCCTAGTACTGAAGGTATATTTTCTGCGGGTGGAGATGGACTGAAACGTGCTATGAAAAATAGGCAATCTGATGTGATCAAATCATTTACAGACCGGTCAGAAATAACTGGAAAGACAAATAAAGAGAATTACAGTAAACGTCCCTCAGGTGGTCGCAGAGGAAAGATTGGGAAGATGAGTACAAGCAAGGATGTGACTGCGGTAAGGAGACCTGGCGCTACAGCCAAATTGTTCAAACACAAGAAAGTTGGGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC173

Protein Analysis

1150

Amino Acids

126.48

Weight (kDa)

8.93

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP12_HEAT PF08161 18 - 308 1.1e-43 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23540
fragaria_vesca FvH4_6g24030 FvH4_6g24030 FvH4_6g24030 FvH4_6g24030
malus_domestica MD12G1075000.v1.1
prunus_persica Prupe.7G058600_v2.0.a1
pyrus_communis pycom12g06460 pycom14g06290
rosa_chinensis RchiOBHm_Chr3g0482611
rosa_laevigata RLG00000023336
rosa_multiflora Rmu_co8265035.1_g000001 Rmu_sc0015494.1_g000006
rosa_roxburghii Rroxscaffold_6G00399070
rosa_rugosa Rorug03G0197600
rosa_samantha Rh3AG248700 Rh3BG284200 Rh3CG281700 Rh3DG277900
rosa_wichuraiana Rw3G022460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1139, 2063
Acc36I ACCTGC 1 cut(s) 995
Acc65I GGTACC 1 cut(s) 1459
AccB1I GGYRCC 1 cut(s) 1459
AccB7I CCANNNNNTGG 1 cut(s) 1078
AccBSI CCGCTC 2 cut(s) 262, 2319
AccII CGCG 3 cut(s) 230, 751, 3015
AclWI GGATC 5 cut(s) 643, 977, 1089, 1799, 3145
AcoI YGGCCR 1 cut(s) 1545
AcsI RAATTY 3 cut(s) 1657, 2057, 2283
AcuI CTGAAG 6 cut(s) 612, 1029, 1334, 1883, 1962, 3219
AcvI CACGTG 1 cut(s) 1601
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 9 cut(s) 1410, 1461, 1652, 1812, 2022, 2119, 2799, 3196, 3370
AfiI CCNNNNNNNGG 5 cut(s) 296, 835, 1078, 1820, 3338
AflII CTTAAG 1 cut(s) 2024
AflIII ACRYGT 4 cut(s) 198, 867, 1075, 1439
AgeI ACCGGT 1 cut(s) 3282
AhdI GACNNNNNGTC 2 cut(s) 199, 202
AjnI CCWGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
AjuI GAANNNNNNNTTGG 2 cut(s) 1994, 2026
AloI GAACNNNNNNTCC 2 cut(s) 2926, 2958
Alw21I GWGCWC 2 cut(s) 258, 2109
Alw26I GTCTC 9 cut(s) 469, 512, 1387, 2556, 2579, 2810, 2878, 2884, 3391
AlwI GGATC 5 cut(s) 643, 977, 1089, 1799, 3145
AlwNI CAGNNNCTG 4 cut(s) 307, 1934, 1985, 2666
Ama87I CYCGRG 2 cut(s) 509, 2881
AoxI GGCC 4 cut(s) 294, 1385, 1545, 2235
ApeKI GCWGC 2 cut(s) 85, 2746
ApoI RAATTY 3 cut(s) 1657, 2057, 2283
ArsI GACNNNNNNTTYG 4 cut(s) 468, 500, 2973, 3005
AsiGI ACCGGT 1 cut(s) 3282
Asp700I GAANNNNTTC 1 cut(s) 2009
Asp718I GGTACC 1 cut(s) 1459
AspLEI GCGC 5 cut(s) 35, 123, 232, 307, 3407
AspS9I GGNCC 6 cut(s) 58, 746, 1385, 1510, 2588, 2871
AsuHPI GGTGA 7 cut(s) 690, 965, 1442, 2027, 2375, 2631, 3178
AvaI CYCGRG 2 cut(s) 509, 2881
AvaII GGWCC 5 cut(s) 58, 746, 1510, 2588, 2871
AxyI CCTNAGG 2 cut(s) 480, 3334
BalI TGGCCA 1 cut(s) 1547
BanI GGYRCC 1 cut(s) 1459
BanII GRGCYC 1 cut(s) 2185
BauI CACGAG 1 cut(s) 263
BbrPI CACGTG 1 cut(s) 1601
Bbv12I GWGCWC 2 cut(s) 258, 2109
BbvCI CCTCAGC 1 cut(s) 1674
BbvI GCAGC 2 cut(s) 97, 2733
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 4 cut(s) 2231, 2265, 2743, 2777
BciT130I CCWGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
BclI TGATCA 1 cut(s) 3264
BcoDI GTCTC 9 cut(s) 469, 512, 1387, 2556, 2579, 2810, 2878, 2884, 3391
BfmI CTRYAG 4 cut(s) 846, 1586, 2949, 3408
BfoI RGCGCY 2 cut(s) 308, 3408
BfrI CTTAAG 1 cut(s) 2024
BfuAI ACCTGC 1 cut(s) 995
BglI GCCNNNNNGGC 2 cut(s) 302, 3018
BglII AGATCT 3 cut(s) 1582, 2191, 2549
BisI GCNGC 9 cut(s) 86, 111, 114, 135, 174, 228, 269, 2747, 3013
BlsI GCNGC 9 cut(s) 87, 112, 115, 136, 175, 229, 270, 2748, 3014
BmcAI AGTACT 4 cut(s) 2022, 2119, 2799, 3196
Bme1390I CCNGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
Bme18I GGWCC 5 cut(s) 58, 746, 1510, 2588, 2871
BmeRI GACNNNNNGTC 2 cut(s) 199, 202
BmeT110I CYCGRG 2 cut(s) 509, 2881
BmgT120I GGNCC 6 cut(s) 58, 746, 1385, 1510, 2588, 2871
BmiI GGNNCC 5 cut(s) 747, 1386, 1461, 2182, 2873
BmrFI CCNGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
BmsI GCATC 8 cut(s) 288, 1043, 1225, 1499, 1948, 1958, 2645, 2833
BoxI GACNNNNGTC 1 cut(s) 362
BpmI CTGGAG 3 cut(s) 350, 515, 3023
Bpu10I CCTNAGC 2 cut(s) 1674, 2718
BpuEI CTTGAG 2 cut(s) 440, 1232
BsaAI YACGTR 3 cut(s) 275, 868, 1601
BsaHI GRCGYC 1 cut(s) 363
BsaI GGTCTC 2 cut(s) 469, 3391
BsaJI CCNNGG 7 cut(s) 249, 291, 749, 873, 2184, 2867, 3033
BsaWI WCCGGW 1 cut(s) 3282
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 2912, 2942
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 835, 1078, 1820, 3338
Bse118I RCCGGY 3 cut(s) 296, 359, 3282
Bse1I ACTGG 8 cut(s) 532, 955, 1266, 1548, 1786, 2631, 2805, 3301
Bse21I CCTNAGG 2 cut(s) 480, 3334
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
BseDI CCNNGG 7 cut(s) 249, 291, 749, 873, 2184, 2867, 3033
BseGI GGATG 9 cut(s) 126, 655, 1034, 1231, 1636, 1963, 2050, 3096, 3385
BseLI CCNNNNNNNGG 5 cut(s) 296, 835, 1078, 1820, 3338
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 8 cut(s) 532, 955, 1266, 1548, 1786, 2631, 2805, 3301
BseRI GAGGAG 6 cut(s) 32, 89, 224, 1193, 2258, 2528
BseXI GCAGC 2 cut(s) 97, 2733
BsgI GTGCAG 2 cut(s) 641, 1815
Bsh1236I CGCG 3 cut(s) 230, 751, 3015
BshFI GGCC 4 cut(s) 296, 1387, 1547, 2237
BshNI GGYRCC 1 cut(s) 1459
BshTI ACCGGT 1 cut(s) 3282
BsiHKAI GWGCWC 2 cut(s) 258, 2109
BsiHKCI CYCGRG 2 cut(s) 509, 2881
BsiSI CCGG 3 cut(s) 297, 360, 3283
BslI CCNNNNNNNGG 5 cut(s) 296, 835, 1078, 1820, 3338
BsmAI GTCTC 9 cut(s) 469, 512, 1387, 2556, 2579, 2810, 2878, 2884, 3391
BsnI GGCC 4 cut(s) 296, 1387, 1547, 2237
Bso31I GGTCTC 2 cut(s) 469, 3391
BsoBI CYCGRG 2 cut(s) 509, 2881
Bsp1286I GDGCHC 3 cut(s) 258, 2109, 2185
BspANI GGCC 4 cut(s) 296, 1387, 1547, 2237
BspFNI CGCG 3 cut(s) 230, 751, 3015
BspLI GGNNCC 5 cut(s) 747, 1386, 1461, 2182, 2873
BspMAI CTGCAG 1 cut(s) 2953
BspMI ACCTGC 1 cut(s) 995
BspPI GGATC 5 cut(s) 643, 977, 1089, 1799, 3145
BspQI GCTCTTC 1 cut(s) 2097
BspT107I GGYRCC 1 cut(s) 1459
BspTI CTTAAG 1 cut(s) 2024
BspTNI GGTCTC 2 cut(s) 469, 3391
BsrBI CCGCTC 2 cut(s) 262, 2319
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 3 cut(s) 296, 359, 3282
BsrI ACTGG 8 cut(s) 532, 955, 1266, 1548, 1786, 2631, 2805, 3301
BssAI RCCGGY 3 cut(s) 296, 359, 3282
BssECI CCNNGG 7 cut(s) 249, 291, 749, 873, 2184, 2867, 3033
BssNI GRCGYC 1 cut(s) 363
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 3 cut(s) 291, 873, 3033
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
Bst4CI ACNGT 9 cut(s) 506, 685, 901, 1723, 1881, 2075, 2371, 2911, 3323
Bst6I CTCTTC 2 cut(s) 2097, 2499
BstACI GRCGYC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 2024
BstBAI YACGTR 3 cut(s) 275, 868, 1601
BstC8I GCNNGC 6 cut(s) 309, 559, 1549, 1740, 2239, 3069
BstDSI CCRYGG 1 cut(s) 749
BstF5I GGATG 9 cut(s) 126, 655, 1034, 1231, 1636, 1963, 2050, 3096, 3385
BstFNI CGCG 3 cut(s) 230, 751, 3015
BstH2I RGCGCY 2 cut(s) 308, 3408
BstHHI GCGC 5 cut(s) 35, 123, 232, 307, 3407
BstMAI GTCTC 9 cut(s) 469, 512, 1387, 2556, 2579, 2810, 2878, 2884, 3391
BstNI CCWGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
BstNSI RCATGY 7 cut(s) 202, 664, 776, 1079, 1443, 1731, 2300
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
BstSFI CTRYAG 4 cut(s) 846, 1586, 2949, 3408
BstUI CGCG 3 cut(s) 230, 751, 3015
BstV1I GCAGC 2 cut(s) 97, 2733
BstX2I RGATCY 5 cut(s) 635, 1081, 1582, 2191, 2549
BstXI CCANNNNNNTGG 2 cut(s) 1781, 3091
BstYI RGATCY 5 cut(s) 635, 1081, 1582, 2191, 2549
Bsu36I CCTNAGG 2 cut(s) 480, 3334
BsuRI GGCC 4 cut(s) 296, 1387, 1547, 2237
BtgI CCRYGG 1 cut(s) 749
BtgZI GCGATG 2 cut(s) 2155, 3030
BtsCI GGATG 9 cut(s) 126, 655, 1034, 1231, 1636, 1963, 2050, 3096, 3385
BtsI GCAGTG 3 cut(s) 547, 1314, 2667
BtsIMutI CAGTG 7 cut(s) 547, 897, 1314, 1338, 1886, 2638, 2667
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 6 cut(s) 309, 559, 1549, 1740, 2239, 3069
CaiI CAGNNNCTG 4 cut(s) 307, 1934, 1985, 2666
CfoI GCGC 5 cut(s) 35, 123, 232, 307, 3407
Cfr10I RCCGGY 3 cut(s) 296, 359, 3282
Cfr13I GGNCC 6 cut(s) 58, 746, 1385, 1510, 2588, 2871
Cfr42I CCGCGG 1 cut(s) 752
CseI GACGC 2 cut(s) 17, 352
Csp6I GTAC 9 cut(s) 1409, 1460, 1651, 1811, 2021, 2118, 2798, 3195, 3369
CspAI ACCGGT 1 cut(s) 3282
CviQI GTAC 9 cut(s) 1409, 1460, 1651, 1811, 2021, 2118, 2798, 3195, 3369
DraI TTTAAA 1 cut(s) 1953
DriI GACNNNNNGTC 2 cut(s) 199, 202
EaeI YGGCCR 1 cut(s) 1545
Eam1104I CTCTTC 2 cut(s) 2097, 2499
Eam1105I GACNNNNNGTC 2 cut(s) 199, 202
EarI CTCTTC 2 cut(s) 2097, 2499
EciI GGCGGA 2 cut(s) 175, 356
Eco130I CCWWGG 3 cut(s) 291, 873, 3033
Eco24I GRGCYC 1 cut(s) 2185
Eco31I GGTCTC 2 cut(s) 469, 3391
Eco32I GATATC 2 cut(s) 807, 2624
Eco47I GGWCC 5 cut(s) 58, 746, 1510, 2588, 2871
Eco57I CTGAAG 6 cut(s) 612, 1029, 1334, 1883, 1962, 3219
Eco72I CACGTG 1 cut(s) 1601
Eco81I CCTNAGG 2 cut(s) 480, 3334
Eco88I CYCGRG 2 cut(s) 509, 2881
EcoO109I RGGNCCY 1 cut(s) 1385
EcoRI GAATTC 1 cut(s) 2283
EcoRII CCWGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
EcoRV GATATC 2 cut(s) 807, 2624
EcoT14I CCWWGG 3 cut(s) 291, 873, 3033
EcoT22I ATGCAT 2 cut(s) 1153, 1716
EcoT38I GRGCYC 1 cut(s) 2185
ErhI CCWWGG 3 cut(s) 291, 873, 3033
FauI CCCGC 5 cut(s) 90, 267, 545, 2324, 3208
FbaI TGATCA 1 cut(s) 3264
Fnu4HI GCNGC 9 cut(s) 86, 111, 114, 135, 174, 228, 269, 2747, 3013
FokI GGATG 9 cut(s) 113, 662, 1021, 1238, 1623, 1970, 2057, 3103, 3392
FriOI GRGCYC 1 cut(s) 2185
Fsp4HI GCNGC 9 cut(s) 86, 111, 114, 135, 174, 228, 269, 2747, 3013
GlaI GCGC 5 cut(s) 34, 122, 231, 306, 3406
GluI GCNGC 9 cut(s) 86, 111, 114, 135, 174, 228, 269, 2747, 3013
GsuI CTGGAG 3 cut(s) 350, 515, 3023
HaeII RGCGCY 2 cut(s) 308, 3408
HaeIII GGCC 4 cut(s) 296, 1387, 1547, 2237
HapII CCGG 3 cut(s) 297, 360, 3283
HgaI GACGC 2 cut(s) 17, 352
HhaI GCGC 5 cut(s) 35, 123, 232, 307, 3407
Hin1I GRCGYC 1 cut(s) 363
Hin6I GCGC 5 cut(s) 33, 121, 230, 305, 3405
HinP1I GCGC 5 cut(s) 33, 121, 230, 305, 3405
HincII GTYRAC 1 cut(s) 1771
HindII GTYRAC 1 cut(s) 1771
HindIII AAGCTT 1 cut(s) 677
HpaI GTTAAC 1 cut(s) 1771
HpaII CCGG 3 cut(s) 297, 360, 3283
HphI GGTGA 7 cut(s) 690, 965, 1442, 2027, 2375, 2631, 3178
Hpy166II GTNNAC 3 cut(s) 1447, 1771, 3326
Hpy8I GTNNAC 3 cut(s) 1447, 1771, 3326
Hpy99I CGWCG 2 cut(s) 197, 289
HpyAV CCTTC 8 cut(s) 171, 900, 1118, 2171, 2485, 2739, 3163, 3194
HpyCH4III ACNGT 9 cut(s) 506, 685, 901, 1723, 1881, 2075, 2371, 2911, 3323
HpyCH4IV ACGT 7 cut(s) 274, 822, 867, 1600, 2486, 3235, 3328
HpySE526I ACGT 7 cut(s) 274, 822, 867, 1600, 2486, 3235, 3328
Hsp92I GRCGYC 1 cut(s) 363
HspAI GCGC 5 cut(s) 33, 121, 230, 305, 3405
KpnI GGTACC 1 cut(s) 1463
Ksp22I TGATCA 1 cut(s) 3264
KspAI GTTAAC 1 cut(s) 1771
KspI CCGCGG 1 cut(s) 752
LguI GCTCTTC 1 cut(s) 2097
Lsp1109I GCAGC 2 cut(s) 97, 2733
LweI GCATC 8 cut(s) 288, 1043, 1225, 1499, 1948, 1958, 2645, 2833
MaeII ACGT 7 cut(s) 274, 822, 867, 1600, 2486, 3235, 3328
MaeIII GTNAC 9 cut(s) 1430, 1684, 1798, 2340, 2482, 2851, 2905, 2962, 3382
MbiI CCGCTC 2 cut(s) 262, 2319
MfeI CAATTG 2 cut(s) 702, 1450
MflI RGATCY 5 cut(s) 635, 1081, 1582, 2191, 2549
MhlI GDGCHC 3 cut(s) 258, 2109, 2185
MlsI TGGCCA 1 cut(s) 1547
MluNI TGGCCA 1 cut(s) 1547
MlyI GAGTC 5 cut(s) 149, 1907, 2392, 2426, 2558
MmeI TCCRAC 3 cut(s) 1465, 1664, 2049
Mox20I TGGCCA 1 cut(s) 1547
Mph1103I ATGCAT 2 cut(s) 1153, 1716
MroXI GAANNNNTTC 1 cut(s) 2009
MscI TGGCCA 1 cut(s) 1547
MslI CAYNNNNRTG 6 cut(s) 902, 951, 1599, 2140, 2615, 3180
Msp20I TGGCCA 1 cut(s) 1547
MspA1I CMGCKG 2 cut(s) 751, 2858
MspCI CTTAAG 1 cut(s) 2024
MspI CCGG 3 cut(s) 297, 360, 3283
MspR9I CCNGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
MunI CAATTG 2 cut(s) 702, 1450
MvaI CCWGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
MvnI CGCG 3 cut(s) 230, 751, 3015
NlaIV GGNNCC 5 cut(s) 747, 1386, 1461, 2182, 2873
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 5 cut(s) 1430, 2482, 2851, 2905, 3382
NsiI ATGCAT 2 cut(s) 1153, 1716
NspI RCATGY 7 cut(s) 202, 664, 776, 1079, 1443, 1731, 2300
PaeR7I CTCGAG 2 cut(s) 509, 2881
PciI ACATGT 3 cut(s) 198, 1075, 1439
PciSI GCTCTTC 1 cut(s) 2097
PdmI GAANNNNTTC 1 cut(s) 2009
PfeI GAWTC 9 cut(s) 425, 956, 976, 1703, 1988, 2254, 2413, 2495, 3074
PflFI GACNNNGTC 2 cut(s) 824, 899
PflMI CCANNNNNTGG 1 cut(s) 1078
PinAI ACCGGT 1 cut(s) 3282
PkrI GCNGC 9 cut(s) 87, 112, 115, 136, 175, 229, 270, 2748, 3014
PleI GAGTC 5 cut(s) 148, 1907, 2391, 2426, 2558
PmaCI CACGTG 1 cut(s) 1601
PmlI CACGTG 1 cut(s) 1601
PpsI GAGTC 5 cut(s) 148, 1907, 2391, 2426, 2558
Ppu21I YACGTR 3 cut(s) 275, 868, 1601
PscI ACATGT 3 cut(s) 198, 1075, 1439
PshAI GACNNNNGTC 1 cut(s) 362
PsiI TTATAA 2 cut(s) 1139, 2063
Psp6I CCWGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
PspCI CACGTG 1 cut(s) 1601
PspGI CCWGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
PspN4I GGNNCC 5 cut(s) 747, 1386, 1461, 2182, 2873
PspPI GGNCC 6 cut(s) 58, 746, 1385, 1510, 2588, 2871
PstI CTGCAG 1 cut(s) 2953
PstNI CAGNNNCTG 4 cut(s) 307, 1934, 1985, 2666
PsuI RGATCY 5 cut(s) 635, 1081, 1582, 2191, 2549
PsyI GACNNNGTC 2 cut(s) 824, 899
RsaI GTAC 9 cut(s) 1410, 1461, 1652, 1812, 2022, 2119, 2799, 3196, 3370
RsaNI GTAC 9 cut(s) 1409, 1460, 1651, 1811, 2021, 2118, 2798, 3195, 3369
RseI CAYNNNNRTG 6 cut(s) 902, 951, 1599, 2140, 2615, 3180
SacII CCGCGG 1 cut(s) 752
SapI GCTCTTC 1 cut(s) 2097
SatI GCNGC 9 cut(s) 86, 111, 114, 135, 174, 228, 269, 2747, 3013
Sau96I GGNCC 6 cut(s) 58, 746, 1385, 1510, 2588, 2871
ScaI AGTACT 4 cut(s) 2022, 2119, 2799, 3196
SchI GAGTC 5 cut(s) 149, 1907, 2392, 2426, 2558
ScrFI CCNGG 6 cut(s) 251, 1973, 2186, 2361, 2869, 3402
SduI GDGCHC 3 cut(s) 258, 2109, 2185
SfaNI GCATC 8 cut(s) 288, 1043, 1225, 1499, 1948, 1958, 2645, 2833
SfcI CTRYAG 4 cut(s) 846, 1586, 2949, 3408
Sfr274I CTCGAG 2 cut(s) 509, 2881
Sfr303I CCGCGG 1 cut(s) 752
SgrBI CCGCGG 1 cut(s) 752
SinI GGWCC 5 cut(s) 58, 746, 1510, 2588, 2871
SlaI CTCGAG 2 cut(s) 509, 2881
SmiMI CAYNNNNRTG 6 cut(s) 902, 951, 1599, 2140, 2615, 3180
SmlI CTYRAG 5 cut(s) 455, 509, 1247, 2024, 2881
SmoI CTYRAG 5 cut(s) 455, 509, 1247, 2024, 2881
SspI AATATT 1 cut(s) 929
StyD4I CCNGG 6 cut(s) 249, 1971, 2184, 2359, 2867, 3400
StyI CCWWGG 3 cut(s) 291, 873, 3033
TaaI ACNGT 9 cut(s) 506, 685, 901, 1723, 1881, 2075, 2371, 2911, 3323
TaiI ACGT 7 cut(s) 277, 825, 870, 1603, 2489, 3238, 3331
TaqI TCGA 5 cut(s) 192, 510, 2386, 2763, 2882
TatI WGTACW 5 cut(s) 2020, 2117, 2797, 3194, 3368
TauI GCSGC 7 cut(s) 113, 116, 137, 176, 230, 271, 3015
TfiI GAWTC 9 cut(s) 425, 956, 976, 1703, 1988, 2254, 2413, 2495, 3074
TscAI CASTG 7 cut(s) 547, 904, 1321, 1345, 1886, 2638, 2667
TseFI GTSAC 5 cut(s) 1430, 2482, 2851, 2905, 3382
TseI GCWGC 2 cut(s) 85, 2746
Tsp45I GTSAC 5 cut(s) 1430, 2482, 2851, 2905, 3382
TspGWI ACGGA 3 cut(s) 454, 851, 2601
TspRI CASTG 7 cut(s) 547, 904, 1321, 1345, 1886, 2638, 2667
Tth111I GACNNNGTC 2 cut(s) 824, 899
Van91I CCANNNNNTGG 1 cut(s) 1078
Vha464I CTTAAG 1 cut(s) 2024
VpaK11BI GGWCC 5 cut(s) 58, 746, 1510, 2588, 2871
XapI RAATTY 3 cut(s) 1657, 2057, 2283
XbaI TCTAGA 1 cut(s) 2287
XceI RCATGY 7 cut(s) 202, 664, 776, 1079, 1443, 1731, 2300
XhoI CTCGAG 2 cut(s) 509, 2881
XmnI GAANNNNTTC 1 cut(s) 2009
ZrmI AGTACT 4 cut(s) 2022, 2119, 2799, 3196
Zsp2I ATGCAT 2 cut(s) 1153, 1716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.