Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

17349335 .. 17354444

Gene Structure 5110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTCCAAGAATTTCGGTGTCGATCCTCATGGTGACATTGCTGCTTGTTGGTTCTTCAGCTTGCTTTGTGGAAGAGCTGAAGTCGCTTGGATTTACTTACTCGGGTGCGACTGGCCCTCAGAGATGGGGAAGCTTGAGTCCATATTTCTCAGCATGTAATGGAAAGAAGCAATCTCCTCTGGACCTTGCCAAGGACAAGGTTATTCGTAGCAGGAATTTCAAGCCATTAACCCGAAATTACCTTGCGTTGAATTCCACATTATACAACAATGGCTTTAACATTGGGGTGCATTTCGATGGACAAATTGCCGGAACATTAGTCATAGATGGTAAGAATTACAACTTGAAGCAGCTGCACTGGCATTCTCCCTCTGAACACCGTATTAATGGAGTCCAATTTCCAGCGGAGCTTCATCTAGTTCACCTGGCAGATGATAATAGCATCGCAGTTGTGGCAAATCTTTTCCAATATGGCAAAGATGACATCTTCATCTCTCAGATCAAGGACAAGCTGGCGGAGTTGGCCGAGGAGGTATGTAGAAGAGATAAGGATGCACATATTCCCCTAGGAAATATAGACATGAAAGAGTTCGATAAAAGAACCCGCAAATATTGGAGATATGTTGGCTCTCTCTCTTCTCCTCCTTGCACTGAGAATGTCATCTGGAACATCCTTGGAAAGGTGAGGTACATTTCCAAGGCTCAGATAGACGCTATAAAAGCACCATTGGGAGCAGATTACAAGAACAACTCAAGACCGCTGCAGCCTCTTAATGGACGCAAAATTGAGCTCTTCCATGAGCTTAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

271

Amino Acids

30.46

Weight (kDa)

9.24

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	39 - 264	1.8e-40	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	407, 518, 607, 761
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	12, 217, 253
AcuI	CTGAAG	2 cut(s)	42, 101
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	3 cut(s)	193, 682, 776
AgsI	TTSAA	3 cut(s)	223, 253, 349
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	8 cut(s)	62, 79, 135, 355, 412, 514, 793, 805
AluI	AGCT	8 cut(s)	62, 79, 135, 355, 412, 514, 793, 805
Alw21I	GWGCWC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	2 cut(s)	115, 525
ApeKI	GCWGC	5 cut(s)	43, 352, 355, 763, 766
ApoI	RAATTY	3 cut(s)	12, 217, 253
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	590
AspA2I	CCTAGG	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	116, 184
AsuHPI	GGTGA	3 cut(s)	46, 416, 697
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	184
AvrII	CCTAGG	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	5 cut(s)	30, 342, 364, 750, 778
BccI	CCATC	3 cut(s)	120, 293, 323
BciT130I	CCWGG	1 cut(s)	428
BfaI	CTAG	3 cut(s)	419, 569, 814
BfmI	CTRYAG	1 cut(s)	764
BisI	GCNGC	5 cut(s)	44, 353, 356, 764, 767
BlnI	CCTAGG	1 cut(s)	568
BlpI	GCTNAGC	1 cut(s)	806
BlsI	GCNGC	5 cut(s)	45, 354, 357, 765, 768
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	116, 184
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	453, 544
Bpu1102I	GCTNAGC	1 cut(s)	806
BpuEI	CTTGAG	2 cut(s)	157, 739
BsaJI	CCNNGG	5 cut(s)	192, 528, 568, 676, 699
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 682, 776
Bse1I	ACTGG	2 cut(s)	118, 365
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	5 cut(s)	192, 528, 568, 676, 699
BseGI	GGATG	2 cut(s)	559, 672
BseLI	CCNNNNNNNGG	3 cut(s)	193, 682, 776
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	5 cut(s)	134, 165, 512, 645, 719
BseNI	ACTGG	2 cut(s)	118, 365
BseRI	GAGGAG	3 cut(s)	168, 545, 633
BseXI	GCAGC	5 cut(s)	30, 342, 364, 750, 778
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	117, 527
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	193, 682, 776
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	117, 527
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	24, 501
Bsp1720I	GCTNAGC	1 cut(s)	806
BspACI	CCGC	4 cut(s)	407, 518, 607, 761
BspANI	GGCC	2 cut(s)	117, 527
BspCNI	CTCAG	5 cut(s)	133, 164, 511, 646, 718
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	768
BspPI	GGATC	1 cut(s)	19
BspQI	GCTCTTC	2 cut(s)	69, 800
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	118, 365
BssECI	CCNNGG	5 cut(s)	192, 528, 568, 676, 699
BssMI	GATC	2 cut(s)	24, 501
BssT1I	CCWWGG	4 cut(s)	192, 568, 676, 699
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	4 cut(s)	69, 538, 643, 800
BstC8I	GCNNGC	2 cut(s)	64, 516
BstDEI	CTNAG	6 cut(s)	120, 151, 498, 654, 705, 806
BstENI	CCTNNNNNAGG	2 cut(s)	191, 680
BstF5I	GGATG	2 cut(s)	559, 672
BstKTI	GATC	2 cut(s)	27, 504
BstMBI	GATC	2 cut(s)	24, 501
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 361, 455, 524, 722
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	764
BstV1I	GCAGC	5 cut(s)	30, 342, 364, 750, 778
BsuRI	GGCC	2 cut(s)	117, 527
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	559, 672
BtsIMutI	CAGTG	2 cut(s)	358, 651
Cac8I	GCNNGC	2 cut(s)	64, 516
Cfr13I	GGNCC	2 cut(s)	116, 184
CseI	GACGC	2 cut(s)	722, 789
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	4 cut(s)	31, 156, 583, 800
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	6 cut(s)	120, 151, 498, 654, 705, 806
DpnI	GATC	2 cut(s)	26, 503
DpnII	GATC	2 cut(s)	24, 501
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	4 cut(s)	69, 538, 643, 800
EarI	CTCTTC	4 cut(s)	69, 538, 643, 800
EciI	GGCGGA	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	793
Eco130I	CCWWGG	4 cut(s)	192, 568, 676, 699
Eco24I	GRGCYC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	793
Eco57I	CTGAAG	2 cut(s)	42, 101
Eco88I	CYCGRG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	793
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 680
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	4 cut(s)	192, 568, 676, 699
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	4 cut(s)	192, 568, 676, 699
FaeI	CATG	4 cut(s)	34, 159, 586, 803
FatI	CATG	4 cut(s)	30, 155, 582, 799
FauI	CCCGC	1 cut(s)	614
Fnu4HI	GCNGC	5 cut(s)	44, 353, 356, 764, 767
FokI	GGATG	2 cut(s)	566, 659
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	5 cut(s)	44, 353, 356, 764, 767
FspBI	CTAG	3 cut(s)	419, 569, 814
GluI	GCNGC	5 cut(s)	44, 353, 356, 764, 767
HaeIII	GGCC	2 cut(s)	117, 527
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	2 cut(s)	722, 789
Hin1II	CATG	4 cut(s)	34, 159, 586, 803
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	2 cut(s)	139, 393
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	46, 416, 697
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	123, 376, 501, 708
Hpy188III	TCNNGA	3 cut(s)	182, 667, 756
Hpy8I	GTNNAC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	5 cut(s)	292, 358, 557, 651, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 361, 455, 524, 722
HpyF3I	CTNAG	6 cut(s)	120, 151, 498, 654, 705, 806
Hsp92II	CATG	4 cut(s)	34, 159, 586, 803
Kzo9I	GATC	2 cut(s)	24, 501
LguI	GCTCTTC	2 cut(s)	69, 800
LmnI	GCTCC	3 cut(s)	10, 409, 734
Lsp1109I	GCAGC	5 cut(s)	30, 342, 364, 750, 778
LweI	GCATC	2 cut(s)	453, 544
MaeI	CTAG	3 cut(s)	419, 569, 814
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	26, 503
MboI	GATC	2 cut(s)	24, 501
MboII	GAAGA	6 cut(s)	48, 86, 481, 555, 630, 787
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	8 cut(s)	12, 217, 238, 253, 306, 337, 398, 786
MlyI	GAGTC	2 cut(s)	148, 402
MnlI	CCTC	9 cut(s)	38, 129, 189, 382, 523, 526, 654, 681, 780
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	4 cut(s)	230, 279, 387, 774
MslI	CAYNNNNRTG	2 cut(s)	287, 297
MspA1I	CMGCKG	3 cut(s)	355, 407, 763
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	5 cut(s)	85, 361, 455, 524, 722
NdeII	GATC	2 cut(s)	24, 501
NlaIII	CATG	4 cut(s)	34, 159, 586, 803
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	159
PciSI	GCTCTTC	2 cut(s)	69, 800
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	590
PkrI	GCNGC	5 cut(s)	45, 354, 357, 765, 768
PleI	GAGTC	2 cut(s)	147, 401
PpsI	GAGTC	2 cut(s)	147, 401
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	116, 184
PstI	CTGCAG	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	2 cut(s)	287, 297
SacI	GAGCTC	1 cut(s)	795
SapI	GCTCTTC	2 cut(s)	69, 800
SaqAI	TTAA	4 cut(s)	230, 279, 387, 774
SatI	GCNGC	5 cut(s)	44, 353, 356, 764, 767
Sau3AI	GATC	2 cut(s)	24, 501
Sau96I	GGNCC	2 cut(s)	116, 184
SchI	GAGTC	2 cut(s)	148, 402
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	2 cut(s)	453, 544
SfcI	CTRYAG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	287, 297
SmlI	CTYRAG	2 cut(s)	136, 754
SmoI	CTYRAG	2 cut(s)	136, 754
Sse9I	AATT	8 cut(s)	12, 217, 238, 253, 306, 337, 398, 786
SsiI	CCGC	4 cut(s)	407, 518, 607, 761
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	3 cut(s)	419, 569, 814
SstI	GAGCTC	1 cut(s)	795
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	4 cut(s)	192, 568, 676, 699
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	23, 297, 594
TasI	AATT	8 cut(s)	12, 217, 238, 253, 306, 337, 398, 786
Tru1I	TTAA	4 cut(s)	230, 279, 387, 774
Tru9I	TTAA	4 cut(s)	230, 279, 387, 774
TscAI	CASTG	2 cut(s)	365, 658
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	5 cut(s)	43, 352, 355, 763, 766
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	404, 481, 599
TspRI	CASTG	2 cut(s)	365, 658
VpaK11BI	GGWCC	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	387
XagI	CCTNNNNNAGG	2 cut(s)	191, 680
XapI	RAATTY	3 cut(s)	12, 217, 253
XceI	RCATGY	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	3 cut(s)	419, 569, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.