Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

19500311 .. 19503319

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTTAATTGCCCCGACGAGGCCCGGCCTCAGCTGCGACCTCTGCATAATTGTGCTCCAATTCAGCCTTTGCATTACCAAAGGAGTCACAGAACCAACTACTTCCTTTTGATTGTTATGATTCTTGATAAATACTCATGGGTTCTCCAAATAGATGAGTCCAATAACATTGCAATCATTTTCAAGTTCTGGATGCATTGGGTGAGACAATTCCTTGTGCCAGTTGTGATTCATGGATGGTCTACCTACTTGGAGCTTCCCACCTCGCCTGAATTCCTCTTCATCGAGGAGGCTCTCCGCCGACACACTGTCCCAATAGCCACTCTAGTAATTCAACCACCCCACCTCCACCTTCCGCAGTCCAAGACCCGAATTCTCTGCAACAAGCCCAGTAAGAGCAACTCAACATCTTTCAAGGAGTTTAAGCACGTCTCCGTTGACTATGACAGTGGCACTCACCACCTCTCCACTCATATCGGTGGCTTCAGGAAGCGAGACATCCCAAAACACCACCGCTTACGTGTCAAAACGAAGCGTTTCCAGAAGGACTGGGCCGTCTCCGACATCATCAATTGGGTTTATCAGCTCCGTCGCGGTGACGACATTGACGACGTGCTGAATCGATGGGTTGGACTCTTCGCCAGGAAGAACTTCCCCATCCTAATTAGAGTAAGCTTCATTCTTGGAAATGATGGCGAGGGGGTCGGTGTAGCACTGTATGCAAGTGTTCTGGTGATCCCACAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

250

Amino Acids

29.09

Weight (kDa)

9.68

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	594
AciI	CCGC	4 cut(s)	298, 356, 514, 594
AclWI	GGATC	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	272, 372
AcuI	CTGAAG	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	184, 335, 415
AhdI	GACNNNNNGTC	1 cut(s)	308
AjiI	CACGTC	2 cut(s)	430, 613
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	34, 256, 586, 675, 747
AluI	AGCT	5 cut(s)	34, 256, 586, 675, 747
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	4 cut(s)	199, 436, 489, 562
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	3 cut(s)	21, 26, 552
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	272, 372
Asp700I	GAANNNNTTC	2 cut(s)	536, 650
AspS9I	GGNCC	2 cut(s)	22, 552
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	4 cut(s)	214, 449, 608, 745
Bbv12I	GWGCWC	1 cut(s)	58
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	4 cut(s)	231, 618, 665, 686
BceAI	ACGGC	1 cut(s)	539
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	4 cut(s)	199, 436, 489, 562
BfaI	CTAG	2 cut(s)	326, 748
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	25, 643
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmgBI	CACGTC	2 cut(s)	430, 613
BmgT120I	GGNCC	2 cut(s)	22, 552
BmrFI	CCNGG	2 cut(s)	25, 643
BmrI	ACTGGG	2 cut(s)	384, 559
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	2 cut(s)	384, 559
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	521
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 449, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	221, 390, 554
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	643
BseCI	ATCGAT	1 cut(s)	622
BseGI	GGATG	4 cut(s)	198, 242, 498, 657
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	221, 390, 554
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	23, 28, 554
BshVI	ATCGAT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	4 cut(s)	199, 436, 489, 562
BsmBI	CGTCTC	2 cut(s)	436, 562
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	23, 28, 554
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	735
BspACI	CCGC	4 cut(s)	298, 356, 514, 594
BspANI	GGCC	3 cut(s)	23, 28, 554
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	594
BspPI	GGATC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	221, 390, 554
BssMI	GATC	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	3 cut(s)	310, 449, 717
Bst6I	CTCTTC	2 cut(s)	284, 641
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	198, 242, 498, 657
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	1 cut(s)	738
BstMAI	GTCTC	4 cut(s)	199, 436, 489, 562
BstMBI	GATC	1 cut(s)	735
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 43, 719
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	2 cut(s)	23, 641
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	23, 28, 554
BsuTUI	ATCGAT	1 cut(s)	622
BtrI	CACGTC	2 cut(s)	430, 613
BtsCI	GGATG	4 cut(s)	198, 242, 498, 657
BtsIMutI	CAGTG	3 cut(s)	306, 454, 713
Cfr13I	GGNCC	2 cut(s)	22, 552
ClaI	ATCGAT	1 cut(s)	622
CviAII	CATG	2 cut(s)	138, 233
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	737
DpnII	GATC	1 cut(s)	735
DrdI	GACNNNNNNGTC	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	284, 641
Eam1105I	GACNNNNNGTC	1 cut(s)	308
EarI	CTCTTC	2 cut(s)	284, 641
EciI	GGCGGA	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	469
EcoRI	GAATTC	2 cut(s)	272, 372
EcoRII	CCWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	198
Esp3I	CGTCTC	2 cut(s)	436, 562
FaeI	CATG	2 cut(s)	141, 236
FaiI	YATR	7 cut(s)	48, 119, 139, 234, 444, 474, 720
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	137, 232
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	4 cut(s)	205, 249, 485, 644
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	326, 748
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	23, 28, 554
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	2 cut(s)	141, 236
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	6 cut(s)	85, 121, 158, 229, 619, 633
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	4 cut(s)	214, 449, 608, 745
Hpy166II	GTNNAC	2 cut(s)	243, 439
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	4 cut(s)	125, 190, 487, 541
Hpy8I	GTNNAC	2 cut(s)	243, 439
Hpy99I	CGWCG	3 cut(s)	20, 594, 614
HpyAV	CCTTC	2 cut(s)	362, 538
HpyCH4III	ACNGT	3 cut(s)	310, 449, 717
HpyCH4IV	ACGT	3 cut(s)	429, 520, 612
HpyCH4V	TGCA	6 cut(s)	46, 73, 173, 196, 381, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 43, 719
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	3 cut(s)	429, 520, 612
Hsp92II	CATG	2 cut(s)	141, 236
Kzo9I	GATC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	61, 253, 591
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	326, 748
MaeII	ACGT	3 cut(s)	429, 520, 612
MaeIII	GTNAC	2 cut(s)	86, 596
MalI	GATC	1 cut(s)	737
MboI	GATC	1 cut(s)	735
MboII	GAAGA	3 cut(s)	271, 628, 658
MfeI	CAATTG	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	9 cut(s)	7, 49, 60, 209, 272, 330, 372, 571, 663
MlyI	GAGTC	3 cut(s)	94, 167, 627
MmeI	TCCRAC	2 cut(s)	585, 610
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	536, 650
MseI	TTAA	2 cut(s)	6, 423
MslI	CAYNNNNRTG	2 cut(s)	51, 477
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	25, 643
MunI	CAATTG	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	3 cut(s)	34, 43, 719
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	735
NlaIII	CATG	2 cut(s)	141, 236
NmuCI	GTSAC	2 cut(s)	86, 596
NsiI	ATGCAT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdmI	GAANNNNTTC	2 cut(s)	536, 650
PfeI	GAWTC	3 cut(s)	121, 229, 619
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	3 cut(s)	93, 166, 627
PpsI	GAGTC	3 cut(s)	93, 166, 627
Ppu21I	YACGTR	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspPI	GGNCC	2 cut(s)	22, 552
PvuII	CAGCTG	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	51, 477
SaqAI	TTAA	2 cut(s)	6, 423
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	735
Sau96I	GGNCC	2 cut(s)	22, 552
SchI	GAGTC	3 cut(s)	94, 167, 627
ScrFI	CCNGG	2 cut(s)	25, 643
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	51, 477
Sse9I	AATT	9 cut(s)	7, 49, 60, 209, 272, 330, 372, 571, 663
SsiI	CCGC	4 cut(s)	298, 356, 514, 594
SspMI	CTAG	2 cut(s)	326, 748
StyD4I	CCNGG	2 cut(s)	23, 641
TaaI	ACNGT	3 cut(s)	310, 449, 717
TaiI	ACGT	3 cut(s)	432, 523, 615
TaqI	TCGA	2 cut(s)	285, 622
TasI	AATT	9 cut(s)	7, 49, 60, 209, 272, 330, 372, 571, 663
TfiI	GAWTC	3 cut(s)	121, 229, 619
Tru1I	TTAA	2 cut(s)	6, 423
Tru9I	TTAA	2 cut(s)	6, 423
TscAI	CASTG	3 cut(s)	313, 454, 720
TseFI	GTSAC	2 cut(s)	86, 596
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	86, 596
TspDTI	ATGAA	3 cut(s)	221, 271, 667
TspGWI	ACGGA	2 cut(s)	424, 578
TspRI	CASTG	3 cut(s)	313, 454, 720
XapI	RAATTY	2 cut(s)	272, 372
XmiI	GTMKAC	1 cut(s)	242
XmnI	GAANNNNTTC	2 cut(s)	536, 650
XspI	CTAG	2 cut(s)	326, 748
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.