Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

31291633 .. 31292510

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCACTCTAGTATCTCAACCACCCCACCTCCACCTTCCGCAGTCCAAGACCCGAATTCTCTGTAACAAGCCCAGTAAGAGTGACTCAGCAGCTTTCAAGGAGAAGAAGCACGTCTCCATCGACTACGACAGCGGTGCTCACCACCTCTCCACTCATATCGGCGGCTTCAGGAAGCGAGACATCCCCAAACACCACCGCTTACGCATCGAAACAAAGCTTTTCCAGAAGGACTGGGCCGTCTCCGACATCGTCAATCGGGTCTATCAGCTCCGTCACGGTGACAACATTGACGGTGTGCTCAATCGATGGGTCGGACGCTTCGCCAGGAAGAACTTCCCCATCTTAATTAGAGTAAGCTTCATTCTTGATGAGAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

10.07

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AciI	CCGC	4 cut(s)	41, 135, 165, 199
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	95, 220, 271, 360
AluI	AGCT	4 cut(s)	95, 220, 271, 360
Alw21I	GWGCWC	2 cut(s)	142, 303
Alw26I	GTCTC	3 cut(s)	121, 174, 247
AoxI	GGCC	2 cut(s)	3, 237
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	134, 293
BaeI	ACNNNNGTAYC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	142, 303
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	128, 303, 350
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	121, 174, 247
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	93, 166
BlsI	GCNGC	2 cut(s)	94, 167
Bme1390I	CCNGG	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	328
BmrI	ACTGGG	2 cut(s)	69, 244
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	2 cut(s)	69, 244
Bsa29I	ATCGAT	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 134, 164
Bse1I	ACTGG	2 cut(s)	75, 239
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	307
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	75, 239
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	2 cut(s)	5, 239
BshVI	ATCGAT	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	142, 303
BsmAI	GTCTC	3 cut(s)	121, 174, 247
BsmBI	CGTCTC	2 cut(s)	121, 247
BsnI	GGCC	2 cut(s)	5, 239
Bsp1286I	GDGCHC	2 cut(s)	142, 303
BspACI	CCGC	4 cut(s)	41, 135, 165, 199
BspANI	GGCC	2 cut(s)	5, 239
BspCNI	CTCAG	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	75, 239
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	281, 296
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	183
BstMAI	GTCTC	3 cut(s)	121, 174, 247
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	5, 239
BsuTUI	ATCGAT	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	1 cut(s)	327
CviJI	RGCY	8 cut(s)	5, 73, 95, 168, 220, 239, 271, 360
CviKI_1	RGCY	8 cut(s)	5, 73, 95, 168, 220, 239, 271, 360
DdeI	CTNAG	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	326
Esp3I	CGTCTC	2 cut(s)	121, 247
FaiI	YATR	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	93, 166
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	93, 166
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	93, 166
HaeIII	GGCC	2 cut(s)	5, 239
HgaI	GACGC	1 cut(s)	327
HindIII	AAGCTT	2 cut(s)	218, 358
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	2 cut(s)	134, 293
Hpy188I	TCNGA	2 cut(s)	247, 317
Hpy188III	TCNNGA	3 cut(s)	172, 226, 368
HpyAV	CCTTC	2 cut(s)	47, 223
HpyCH4III	ACNGT	2 cut(s)	281, 296
HpyCH4IV	ACGT	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	88, 157, 220, 239, 313, 340
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	4 cut(s)	65, 83, 275, 281
MboII	GAAGA	2 cut(s)	118, 343
MhlI	GDGCHC	2 cut(s)	142, 303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	57, 348, 376
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	270, 295
MnlI	CCTC	2 cut(s)	41, 158
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
NmuCI	GTSAC	3 cut(s)	83, 275, 281
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	94, 167
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	2 cut(s)	93, 166
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	142, 303
SetI	ASST	8 cut(s)	33, 39, 97, 117, 150, 222, 273, 362
SfaNI	GCATC	1 cut(s)	216
Sse9I	AATT	3 cut(s)	57, 348, 376
SsiI	CCGC	4 cut(s)	41, 135, 165, 199
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	281, 296
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	123, 210, 307
TasI	AATT	3 cut(s)	57, 348, 376
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseFI	GTSAC	3 cut(s)	83, 275, 281
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	3 cut(s)	83, 275, 281
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	263
Tth111I	GACNNNGTC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.