Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

63042074 .. 63042943

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG470100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGCACAGGAATGACGTCAGCTTCCCCAAGTTGCTCAAGTCCGTTCTGCTCGACCTCACTGTGTGCCTAGGTCTGCTCTGCTTCTACTACGGCTGGTCCTTCGCTCCGGGCCCCTGCCGCTCCAACGACGAAGAGGCTTCCGATTCGAATGGCTTCGACCCGATTTTCAGTGGCTCCCTCACCCGTCGTCATCGCGAGGCCGAGCCCCCCCAAAGCATTCCTGTTTGTGATATGCAATTCTCGGAGTTGATACCTTGTCTCGATAGAAACCTCATTTACCAGCTGAAATTGAAGGTACTAGTATCCCAGCCACCCCTCCTCCACCTTCCGCAGTCCAAGACCCGAATTCTCTGCAACAAGCCTAACAACAGCAAGAACGACTCAACAGCTTTCAAGGAGAAGAAGCACGTCTCCGTCGACTATGACAACGACACTCACAACCTCTCCACTCATATCGGCGGTTTCAGGAAGCAAGATCGACATTCCAAAACACCACCGCTTACGCGTCGAAATGAGCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

175

Amino Acids

20.03

Weight (kDa)

8.92

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	2 cut(s)	198, 508
AciI	CCGC	4 cut(s)	121, 332, 462, 500
AcsI	RAATTY	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	300
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	295, 397
AhlI	ACTAGT	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	412
AluBI	AGCT	3 cut(s)	24, 286, 392
AluI	AGCT	3 cut(s)	24, 286, 392
Alw26I	GTCTC	2 cut(s)	266, 418
AoxI	GGCC	2 cut(s)	112, 201
ApaI	GGGCCC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	99, 112, 113
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	116, 210
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	266, 418
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	3 cut(s)	71, 302, 526
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	121
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	99, 112, 113
BmiI	GGNNCC	3 cut(s)	114, 115, 178
BmrFI	CCNGG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 431, 461
BseDI	CCNNGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	198, 508
BshFI	GGCC	2 cut(s)	114, 203
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	266, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	114, 203
Bsp119I	TTCGAA	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	116, 210
Bsp143I	GATC	1 cut(s)	478
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	4 cut(s)	121, 332, 462, 500
BspANI	GGCC	2 cut(s)	114, 203
BspFNI	CGCG	2 cut(s)	198, 508
BspLI	GGNNCC	3 cut(s)	114, 115, 178
BspT104I	TTCGAA	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	149
BstFNI	CGCG	2 cut(s)	198, 508
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	266, 418
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	2 cut(s)	198, 508
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	114, 203
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	60, 178
BtuMI	TCGCGA	1 cut(s)	198
Cfr13I	GGNCC	3 cut(s)	99, 112, 113
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	299
CviQI	GTAC	1 cut(s)	299
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	116, 210
Eco47I	GGWCC	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	116, 210
ErhI	CCWWGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	418
FaiI	YATR	3 cut(s)	236, 426, 456
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	116, 210
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	3 cut(s)	71, 302, 526
GluI	GCNGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	114, 203
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	497
Hin1I	GRCGYC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	146, 383
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	145, 247
Hpy188III	TCNNGA	3 cut(s)	197, 263, 469
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	4 cut(s)	134, 192, 422, 513
HpyAV	CCTTC	3 cut(s)	112, 289, 338
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	18, 411
HpyCH4V	TGCA	2 cut(s)	238, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	18, 411
Hsp92I	GRCGYC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	112, 128, 182
LpnPI	CCDG	7 cut(s)	82, 123, 130, 237, 296, 323, 454
MaeI	CTAG	3 cut(s)	71, 302, 526
MaeII	ACGT	2 cut(s)	18, 411
MalI	GATC	1 cut(s)	480
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	1 cut(s)	478
MboII	GAAGA	2 cut(s)	146, 415
MhlI	GDGCHC	2 cut(s)	116, 210
MluCI	AATT	3 cut(s)	239, 290, 348
MluI	ACGCGT	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	68, 130, 191, 193, 284, 329, 332, 455
MroXI	GAANNNNTTC	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	219
MvnI	CGCG	2 cut(s)	198, 508
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	478
NlaIV	GGNNCC	3 cut(s)	114, 115, 178
NmeAIII	GCCGAG	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	114, 115, 178
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	99, 112, 113
PvuII	CAGCTG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	419
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	3 cut(s)	99, 112, 113
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	116, 210
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	3 cut(s)	239, 290, 348
SsiI	CCGC	4 cut(s)	121, 332, 462, 500
SspMI	CTAG	3 cut(s)	71, 302, 526
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	2 cut(s)	21, 414
TaqI	TCGA	7 cut(s)	54, 149, 159, 264, 420, 481, 511
TasI	AATT	3 cut(s)	239, 290, 348
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	2 cut(s)	67, 178
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	34, 406
TspRI	CASTG	2 cut(s)	67, 178
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	348
XmaJI	CCTAGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	3 cut(s)	71, 302, 526
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.