Rh7BG421800

Histidine protein methyltransferase 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001672
Physical Location & Seq
Reverse (-)
48075506 .. 48078529
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG421800.1

Sequence Viewer

Length: 384 bp
ATGACAACGACACTCACAACCTCTCCACTCATATCGGCGGTTTCAGGAAGCGAGATCGACATTCCAAAACACCACCGCTTACGCGTCGAAATGGAGCATTTCCAGACGGACTGGGTCGTCTCTGACTTTGTCAATCGAGTCTATCAGCTCTATCGCGGAGACGACATTGACGGGTATCTGAAATCTTGCGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCAAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTAAGCTGGGTTGTAGCTATGGCCTTCGAGGAATTTTTGCTTGTTTGAAGGTATTTAAGTCCCCAAGTACCCATCATGCCTCTGGATCCTACCCTATGGTGAGTCTTGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

6.58

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccII CGCG 2 cut(s) 84, 156
AciI CCGC 3 cut(s) 38, 76, 156
AclWI GGATC 2 cut(s) 348, 361
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 267, 337
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 233, 316
AluBI AGCT 5 cut(s) 148, 195, 249, 274, 285
AluI AGCT 5 cut(s) 148, 195, 249, 274, 285
Alw26I GTCTC 2 cut(s) 124, 153
AlwI GGATC 2 cut(s) 348, 361
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 379
BamHI GGATCC 1 cut(s) 353
BccI CCATC 2 cut(s) 230, 348
BcoDI GTCTC 2 cut(s) 124, 153
BfrI CTTAAG 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 355
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bse1I ACTGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 2 cut(s) 84, 156
BshFI GGCC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 124, 153
BsmBI CGTCTC 2 cut(s) 124, 153
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 54, 202, 353
BspACI CCGC 3 cut(s) 38, 76, 156
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 237
BspFNI CGCG 2 cut(s) 84, 156
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 348, 361
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 116
BssMI GATC 3 cut(s) 54, 202, 353
BstAFI CTTAAG 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 245
BstFNI CGCG 2 cut(s) 84, 156
BstKTI GATC 3 cut(s) 57, 205, 356
BstMAI GTCTC 2 cut(s) 124, 153
BstMBI GATC 3 cut(s) 54, 202, 353
BstUI CGCG 2 cut(s) 84, 156
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 291
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 266, 336
CviAII CATG 2 cut(s) 224, 344
CviJI RGCY 6 cut(s) 148, 195, 249, 274, 285, 291
CviKI_1 RGCY 6 cut(s) 148, 195, 249, 274, 285, 291
CviQI GTAC 2 cut(s) 266, 336
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 56, 204, 355
DpnII GATC 3 cut(s) 54, 202, 353
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 124, 153
FaeI CATG 2 cut(s) 227, 347
FaiI YATR 5 cut(s) 32, 225, 288, 345, 365
FaqI GGGAC 1 cut(s) 313
FatI CATG 2 cut(s) 223, 343
GsaI CCCAGC 1 cut(s) 278
HaeIII GGCC 1 cut(s) 291
HgaI GACGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 227, 347
HinfI GANTC 3 cut(s) 138, 229, 370
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 124, 180
Hpy188III TCNNGA 6 cut(s) 45, 103, 217, 233, 351, 374
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 302, 310
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 2 cut(s) 227, 347
Kzo9I GATC 3 cut(s) 54, 202, 353
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 30, 97, 116, 230, 260, 336
MalI GATC 3 cut(s) 56, 204, 355
MboI GATC 3 cut(s) 54, 202, 353
MflI RGATCY 1 cut(s) 353
MluCI AATT 1 cut(s) 300
MluI ACGCGT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 147, 379
MnlI CCTC 4 cut(s) 31, 248, 290, 358
MseI TTAA 3 cut(s) 210, 270, 324
MspCI CTTAAG 1 cut(s) 269
MvnI CGCG 2 cut(s) 84, 156
NdeII GATC 3 cut(s) 54, 202, 353
NlaIII CATG 2 cut(s) 227, 347
NlaIV GGNNCC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 2 cut(s) 113, 128
PleI GAGTC 2 cut(s) 146, 378
PpsI GAGTC 2 cut(s) 146, 378
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 2 cut(s) 113, 128
RsaI GTAC 2 cut(s) 267, 337
RsaNI GTAC 2 cut(s) 266, 336
SaqAI TTAA 3 cut(s) 210, 270, 324
Sau3AI GATC 3 cut(s) 54, 202, 353
SchI GAGTC 2 cut(s) 147, 379
SetI ASST 7 cut(s) 23, 150, 197, 251, 276, 287, 321
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 300
SsiI CCGC 3 cut(s) 38, 76, 156
TaqI TCGA 4 cut(s) 57, 87, 136, 295
TasI AATT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 3 cut(s) 210, 270, 324
Tru9I TTAA 3 cut(s) 210, 270, 324
TspGWI ACGGA 1 cut(s) 122
Tth111I GACNNNGTC 2 cut(s) 113, 128
Vha464I CTTAAG 1 cut(s) 269
XapI RAATTY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.