Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

3591080 .. 3593150

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCACTCTAGTATCTCAACCACCCCACCTCCACCTTCCGCAGTCCAAGACCCGAACTCTCTGCAACAAGCCCAGTAAGAGCGACTCAGCAGCTTTCAAGGAGAAGAAGCACTTCTCCGTCGACTACGACAGCGGCACTCACCACCTCTCCACTCATATCGGCGACTTCAGAAAGCGAGACATCCCCAAAAACCACCGCTTACACGACGAAACGAAGCATTTCCAGAAAGACTGGGCCGTCTCCGACATCGTCAATCGGATCTATCAGCTCCGTCGCGGTGACGACATTGACGGCGTGCTCAATCAATGGGTCGGACGCTTTGCCAGGAAGAACTTCCCCATCCTAATTAGAGAAATGACGGCGAGGGGGTCAGTGAAGCACTATATGCAAGTGTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

134

Amino Acids

15.72

Weight (kDa)

10.05

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	279
AciI	CCGC	4 cut(s)	41, 135, 199, 279
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	95, 271
AluI	AGCT	2 cut(s)	95, 271
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	174, 247
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	3, 237
ApeKI	GCWGC	1 cut(s)	92
Asp700I	GAANNNNTTC	3 cut(s)	113, 221, 335
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	134, 293
BaeI	ACNNNNGTAYC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	3 cut(s)	224, 310, 378
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	174, 247
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	93, 136
BlsI	GCNGC	2 cut(s)	94, 137
Bme1390I	CCNGG	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	328
BmrI	ACTGGG	2 cut(s)	69, 244
BmuI	ACTGGG	2 cut(s)	69, 244
BsaWI	WCCGGW	1 cut(s)	399
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 134, 164
Bse1I	ACTGG	2 cut(s)	75, 239
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	183, 342
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	75, 239
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	5, 239
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	400
BsmAI	GTCTC	2 cut(s)	174, 247
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	5, 239
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	4 cut(s)	41, 135, 199, 279
BspANI	GGCC	2 cut(s)	5, 239
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	279
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	75, 239
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	183, 342
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	174, 247
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	5, 239
BtsCI	GGATG	2 cut(s)	183, 342
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	327
CviJI	RGCY	5 cut(s)	5, 73, 95, 239, 271
CviKI_1	RGCY	5 cut(s)	5, 73, 95, 239, 271
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	3 cut(s)	159, 387, 389
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	93, 136
FokI	GGATG	2 cut(s)	170, 329
Fsp4HI	GCNGC	2 cut(s)	93, 136
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	93, 136
HaeIII	GGCC	2 cut(s)	5, 239
HapII	CCGG	1 cut(s)	400
HgaI	GACGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	2 cut(s)	134, 293
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	173, 247, 261, 317
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	3 cut(s)	125, 212, 279
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	66, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	5 cut(s)	88, 220, 239, 313, 340
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	118, 343
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	270, 295
MnlI	CCTC	3 cut(s)	41, 158, 360
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	113, 221, 335
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	281
PdmI	GAANNNNTTC	3 cut(s)	113, 221, 335
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	94, 137
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	93, 136
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	33, 39, 97, 150, 273
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	4 cut(s)	41, 135, 199, 279
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	326
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	138
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	281
TspGWI	ACGGA	2 cut(s)	109, 263
TspRI	CASTG	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	3 cut(s)	113, 221, 335
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.