Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

15900241 .. 15900770

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCACTCTAGTATCTCATATCGGTGGCTTCAGGAAGCAAGACATCCCAAAATACCACCGCTTAAGCGTGGAAACAAAGCTTTTCCAGAAGGACTGGGCCGTCTCTGACATCATCAATCTGGTTAATCAGCTCCGTCGCGGTGAAGACATTGACGACGTGCTCAATCGATGGATTGGACGCTTCACCAAGAAGAACTTCCCCATCCTAATTAGAGTAAGCTTCATTCTTAATGAGAATTACCCACGATGGTGGTTGATCTTGAGGCCTCTTGATGACATCGTTTTGCATGTTGGGTTTGAGGTCAACGATGAGACCATGAGCGTGCTGGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

113

Amino Acids

13.26

Weight (kDa)

6.83

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	61, 141
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	82, 133, 222
AluI	AGCT	3 cut(s)	82, 133, 222
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	109, 308
AoxI	GGCC	3 cut(s)	3, 99, 266
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	155, 178
BaeI	ACNNNNGTAYC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	3 cut(s)	165, 212, 243
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	109, 308
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	283
Bsa29I	ATCGAT	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	169
BseGI	GGATG	2 cut(s)	45, 204
BseNI	ACTGG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	5, 101, 268
BshVI	ATCGAT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	109, 308
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	5, 101, 268
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	61, 141
BspANI	GGCC	3 cut(s)	5, 101, 268
BspDI	ATCGAT	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	45, 204
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	109, 308
BstMBI	GATC	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	293
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	5, 101, 268
BsuTUI	ATCGAT	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	45, 204
Cac8I	GCNNGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	290, 319
CviJI	RGCY	7 cut(s)	5, 30, 82, 101, 133, 222, 268
CviKI_1	RGCY	7 cut(s)	5, 30, 82, 101, 133, 222, 268
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	2 cut(s)	293, 322
FaiI	YATR	3 cut(s)	21, 291, 320
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	2 cut(s)	289, 318
FokI	GGATG	2 cut(s)	32, 191
FspBI	CTAG	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	5, 101, 268
HgaI	GACGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	293, 322
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	2 cut(s)	80, 220
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	155, 178
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	5 cut(s)	34, 88, 262, 272, 336
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	2 cut(s)	141, 161
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	293, 322
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	19, 82, 101, 107, 314
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	158, 205
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	210, 238
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	258, 279, 295
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	65, 126, 231
MslI	CAYNNNNRTG	3 cut(s)	24, 250, 323
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	141
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	293, 322
NspI	RCATGY	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	99
RseI	CAYNNNNRTG	3 cut(s)	24, 250, 323
SaqAI	TTAA	3 cut(s)	65, 126, 231
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	5 cut(s)	84, 135, 162, 224, 306
SmiMI	CAYNNNNRTG	3 cut(s)	24, 250, 323
SmlI	CTYRAG	2 cut(s)	64, 262
SmoI	CTYRAG	2 cut(s)	64, 262
Sse9I	AATT	2 cut(s)	210, 238
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	61, 141
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	169
TasI	AATT	2 cut(s)	210, 238
Tru1I	TTAA	3 cut(s)	65, 126, 231
Tru9I	TTAA	3 cut(s)	65, 126, 231
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	64
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.