Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

11785240 .. 11785551

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCACTCTAGTATATCAACCACCCCACCTCCACCTTTTGCAGTCGAAGACCCAAATTCTCTGTAACAAGCCCAATAAGAGCGACTCAGCAGCTTTCAAGGAGAAGAAGCATGTCTCCGTCGACTACGACAGCGGCACTCACCACCTCTCCACTCATATCGGTGACTTCAGGAAGCGAGACATCCCCAAACACCACCACTTACGCGTTGAAACGAAGTGTTTCCAGAAGGATTGGGTCGTCTCTGACATCGTCAATCGAGTCTATCAGCTCCGTCGCGGTGACGACATTGACGGCATGCTCAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

104

Amino Acids

12.04

Weight (kDa)

9.39

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	207, 279
AciI	CCGC	2 cut(s)	135, 279
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	100, 212
AluBI	AGCT	2 cut(s)	95, 271
AluI	AGCT	2 cut(s)	95, 271
Alw26I	GTCTC	3 cut(s)	121, 174, 247
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	134, 176, 293
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	121, 174, 247
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	93, 136
BlsI	GCNGC	2 cut(s)	94, 137
BpiI	GAAGAC	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 134, 164
BseCI	ATCGAT	1 cut(s)	307
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	2 cut(s)	207, 279
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	307
BsmAI	GTCTC	3 cut(s)	121, 174, 247
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	135, 279
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	207, 279
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	207, 279
BstMAI	GTCTC	3 cut(s)	121, 174, 247
BstNSI	RCATGY	2 cut(s)	116, 301
BstUI	CGCG	2 cut(s)	207, 279
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	56
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	307
CviAII	CATG	2 cut(s)	113, 298
CviJI	RGCY	4 cut(s)	5, 73, 95, 271
CviKI_1	RGCY	4 cut(s)	5, 73, 95, 271
DdeI	CTNAG	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	2 cut(s)	116, 301
FaiI	YATR	4 cut(s)	16, 114, 159, 299
FatI	CATG	2 cut(s)	112, 297
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	93, 136
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	93, 136
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	93, 136
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	116, 301
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	86, 261
HphI	GGTGA	3 cut(s)	134, 176, 293
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	172, 226
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	2 cut(s)	125, 279
HpyAV	CCTTC	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	116, 301
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	2 cut(s)	157, 239
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	65, 164, 281
MboII	GAAGA	2 cut(s)	61, 118
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	57
MluI	ACGCGT	1 cut(s)	205
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	80, 270
MnlI	CCTC	2 cut(s)	41, 158
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	207, 279
NlaIII	CATG	2 cut(s)	116, 301
NmuCI	GTSAC	2 cut(s)	164, 281
NspI	RCATGY	2 cut(s)	116, 301
PaeI	GCATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	94, 137
PleI	GAGTC	2 cut(s)	80, 269
PpsI	GAGTC	2 cut(s)	80, 269
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	93, 136
SchI	GAGTC	2 cut(s)	80, 270
SetI	ASST	5 cut(s)	33, 39, 97, 150, 273
SmiMI	CAYNNNNRTG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	2 cut(s)	135, 279
SspMI	CTAG	1 cut(s)	11
TaqI	TCGA	4 cut(s)	47, 123, 259, 307
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	164, 281
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	164, 281
TspGWI	ACGGA	2 cut(s)	109, 263
Tth111I	GACNNNGTC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	2 cut(s)	116, 301
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.