Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

48816602 .. 48830336

Gene Structure 13735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTGCAGCACGGTCTGGCAATTAAGCAAATGGTCCTTAATTATCCTTTCCCCCTCAAGCCAATTGTATTCAGTTACTATGCAGGGTATCTGAAATCTTGCGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCACGAGATTCAAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTAAGCTGGGTTGTAGCTATGGCCTTAGAGGAATTTTTGCTTGTTTGAAGGTATTTAAGTCCCCAAGTACCCATCATGCCTCTGGATCCTACCCTATAGTGAGTCTTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

9.24

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 274
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	180, 250
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	146, 229
AluBI	AGCT	4 cut(s)	108, 162, 187, 198
AluI	AGCT	4 cut(s)	108, 162, 187, 198
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	143, 261
BfmI	CTRYAG	2 cut(s)	5, 276
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	115, 266
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	2 cut(s)	261, 274
BspTI	CTTAAG	1 cut(s)	182
BssMI	GATC	2 cut(s)	115, 266
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	158, 206
BstKTI	GATC	2 cut(s)	118, 269
BstMBI	GATC	2 cut(s)	115, 266
BstSFI	CTRYAG	2 cut(s)	5, 276
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	179, 249
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	61, 108, 162, 187, 198, 204
CviKI_1	RGCY	6 cut(s)	61, 108, 162, 187, 198, 204
CviQI	GTAC	2 cut(s)	179, 249
DdeI	CTNAG	2 cut(s)	158, 206
DpnI	GATC	2 cut(s)	117, 268
DpnII	GATC	2 cut(s)	115, 266
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	152
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	81, 201, 258, 278
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	5, 8
Fsp4HI	GCNGC	2 cut(s)	5, 8
GluI	GCNGC	2 cut(s)	5, 8
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	2 cut(s)	142, 283
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	4 cut(s)	130, 146, 264, 287
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	7, 83
HpyF3I	CTNAG	2 cut(s)	158, 206
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	115, 266
LpnPI	CCDG	5 cut(s)	2, 69, 143, 173, 249
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	117, 268
MboI	GATC	2 cut(s)	115, 266
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	4 cut(s)	21, 40, 63, 213
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	65, 161, 203, 271
MseI	TTAA	5 cut(s)	24, 39, 123, 183, 237
MspCI	CTTAAG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	63
NdeII	GATC	2 cut(s)	115, 266
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	6, 9
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	180, 250
RsaNI	GTAC	2 cut(s)	179, 249
SaqAI	TTAA	5 cut(s)	24, 39, 123, 183, 237
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	2 cut(s)	115, 266
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	292
SetI	ASST	5 cut(s)	110, 164, 189, 200, 234
SfcI	CTRYAG	2 cut(s)	5, 276
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	56, 182
SmoI	CTYRAG	2 cut(s)	56, 182
Sse9I	AATT	4 cut(s)	21, 40, 63, 213
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	21, 40, 63, 213
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	5 cut(s)	24, 39, 123, 183, 237
Tru9I	TTAA	5 cut(s)	24, 39, 123, 183, 237
TseI	GCWGC	2 cut(s)	4, 7
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.