Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

9457359 .. 9460303

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCCAAGGTTATTGAGAAATATGTCATCAACATCGAGGTTGACACCGACGTCGAGGTTAGCATCGAGGTTATTGCGAAAGAAGTCATCGACGTCGAGGTTGGCGCCGACATCGAGGATCGACACCGACGTGGAGGTTAGCGCCGAGGTTATCGAGAGCGACATCATCAACATCGAGGCCGGCATTGTAGTTATTAAGAAGGACGTCACCGATGTCGAGGCCGGTGCCGAGGTTATTGAGAAAAAGTCACGTACCGTCGAGGTTGACATCGCGTACATTAAAGAAGACGGCGTCGACGTCGAGGACGACATCACATTCAGTTACTATGCAGGGTATCCGAAATCTTACGATAGCTCTATTGATCTTGTTAATGTCCCGAAGCATGAGATTCAAGATGGGCAACCGAGCTTCGGAGGAAAAAGGGTACTTAAGCTGGGTTGTAGCTATGGCCTTCGAGGAATTTTTGCTTGTTTGAAGGTATTTAAGTCCCCAAGTACCCATCATGCCTCCGGATCCTACCCCATAGTGAGTCTTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

5.97

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	4 cut(s)	53, 95, 207, 300
AccB1I	GGYRCC	2 cut(s)	103, 224
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	509
AclWI	GGATC	3 cut(s)	125, 507, 520
AcsI	RAATTY	1 cut(s)	459
AcyI	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
AfaI	GTAC	4 cut(s)	253, 275, 426, 496
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	392, 475
AjiI	CACGTC	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	354, 408, 433, 444
AluI	AGCT	4 cut(s)	354, 408, 433, 444
AlwI	GGATC	3 cut(s)	125, 507, 520
Aor13HI	TCCGGA	1 cut(s)	509
AoxI	GGCC	3 cut(s)	177, 219, 448
ApoI	RAATTY	1 cut(s)	459
AspLEI	GCGC	2 cut(s)	106, 143
AsuHPI	GGTGA	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	2 cut(s)	103, 224
BbsI	GAAGAC	1 cut(s)	291
BccI	CCATC	2 cut(s)	389, 507
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 206, 240
BciVI	GTATCC	1 cut(s)	345
BfoI	RGCGCY	2 cut(s)	107, 144
BfrI	CTTAAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	3 cut(s)	105, 226, 514
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	251
BsaHI	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
BsaJI	CCNNGG	3 cut(s)	5, 144, 228
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	2 cut(s)	179, 221
BseAI	TCCGGA	1 cut(s)	509
BseDI	CCNNGG	3 cut(s)	5, 144, 228
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	179, 221, 450
BshNI	GGYRCC	2 cut(s)	103, 224
BsiSI	CCGG	3 cut(s)	180, 222, 510
BslFI	GGGAC	2 cut(s)	359, 472
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	359, 472
BsnI	GGCC	3 cut(s)	179, 221, 450
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	3 cut(s)	117, 361, 512
BspANI	GGCC	3 cut(s)	179, 221, 450
BspEI	TCCGGA	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	105, 226, 514
BspPI	GGATC	3 cut(s)	125, 507, 520
BspT107I	GGYRCC	2 cut(s)	103, 224
BspTI	CTTAAG	1 cut(s)	428
BsrFI	RCCGGY	2 cut(s)	179, 221
BssAI	RCCGGY	2 cut(s)	179, 221
BssECI	CCNNGG	3 cut(s)	5, 144, 228
BssMI	GATC	3 cut(s)	117, 361, 512
BssNI	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
BstAFI	CTTAAG	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	2 cut(s)	107, 144
BstHHI	GCGC	2 cut(s)	106, 143
BstKTI	GATC	3 cut(s)	120, 364, 515
BstMBI	GATC	3 cut(s)	117, 361, 512
BstUI	CGCG	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	179, 221, 450
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	106, 143
Cfr10I	RCCGGY	2 cut(s)	179, 221
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	252, 274, 425, 495
CviAII	CATG	2 cut(s)	383, 503
CviJI	RGCY	7 cut(s)	179, 221, 354, 408, 433, 444, 450
CviKI_1	RGCY	7 cut(s)	179, 221, 354, 408, 433, 444, 450
CviQI	GTAC	4 cut(s)	252, 274, 425, 495
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	3 cut(s)	119, 363, 514
DpnII	GATC	3 cut(s)	117, 361, 512
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	386, 506
FaiI	YATR	6 cut(s)	23, 327, 384, 447, 504, 524
FaqI	GGGAC	2 cut(s)	359, 472
FatI	CATG	2 cut(s)	382, 502
FblI	GTMKAC	1 cut(s)	294
GlaI	GCGC	2 cut(s)	105, 142
GsaI	CCCAGC	1 cut(s)	437
HaeII	RGCGCY	2 cut(s)	107, 144
HaeIII	GGCC	3 cut(s)	179, 221, 450
HapII	CCGG	3 cut(s)	180, 222, 510
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	106, 143
Hin1I	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
Hin1II	CATG	2 cut(s)	386, 506
Hin6I	GCGC	2 cut(s)	104, 141
HinP1I	GCGC	2 cut(s)	104, 141
HincII	GTYRAC	3 cut(s)	42, 265, 295
HindII	GTYRAC	3 cut(s)	42, 265, 295
HinfI	GANTC	2 cut(s)	388, 529
HpaII	CCGG	3 cut(s)	180, 222, 510
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	3 cut(s)	42, 265, 295
Hpy188I	TCNGA	2 cut(s)	339, 413
Hpy188III	TCNNGA	5 cut(s)	154, 376, 392, 510, 533
Hpy8I	GTNNAC	3 cut(s)	42, 265, 295
Hpy99I	CGWCG	9 cut(s)	52, 55, 94, 97, 131, 260, 296, 299, 302
HpyAV	CCTTC	3 cut(s)	193, 461, 469
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	6 cut(s)	50, 92, 129, 204, 250, 297
HpyCH4V	TGCA	1 cut(s)	329
HpySE526I	ACGT	6 cut(s)	50, 92, 129, 204, 250, 297
Hsp92I	GRCGYC	6 cut(s)	50, 92, 104, 204, 291, 297
Hsp92II	CATG	2 cut(s)	386, 506
HspAI	GCGC	2 cut(s)	104, 141
KasI	GGCGCC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	509
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	117, 361, 512
LpnPI	CCDG	5 cut(s)	193, 235, 315, 419, 523
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	6 cut(s)	50, 92, 129, 204, 250, 297
MaeIII	GTNAC	3 cut(s)	205, 246, 320
MalI	GATC	3 cut(s)	119, 363, 514
MboI	GATC	3 cut(s)	117, 361, 512
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	1 cut(s)	512
MluCI	AATT	1 cut(s)	459
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	538
MroI	TCCGGA	1 cut(s)	509
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	5 cut(s)	195, 279, 369, 429, 483
MslI	CAYNNNNRTG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	3 cut(s)	180, 222, 510
MvnI	CGCG	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	3 cut(s)	117, 361, 512
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	386, 506
NlaIV	GGNNCC	3 cut(s)	105, 226, 514
NmeAIII	GCCGAG	2 cut(s)	169, 253
NmuCI	GTSAC	2 cut(s)	205, 246
OliI	CACNNNNGTG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 294, 303
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	537
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	537
Ppu21I	YACGTR	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	105, 226, 514
PsuI	RGATCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	4 cut(s)	253, 275, 426, 496
RsaNI	GTAC	4 cut(s)	252, 274, 425, 495
RseI	CAYNNNNRTG	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	5 cut(s)	195, 279, 369, 429, 483
Sau3AI	GATC	3 cut(s)	117, 361, 512
SchI	GAGTC	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	105
SgrDI	CGTCGACG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	459
SspDI	GGCGCC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	6 cut(s)	53, 95, 132, 207, 253, 300
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	5 cut(s)	195, 279, 369, 429, 483
Tru9I	TTAA	5 cut(s)	195, 279, 369, 429, 483
TseFI	GTSAC	2 cut(s)	205, 246
Tsp45I	GTSAC	2 cut(s)	205, 246
Tth111I	GACNNNGTC	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	294
ZraI	GACGTC	4 cut(s)	51, 93, 205, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.