Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

36516615 .. 36521773

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTGTGTTTAATGGGAAGAAACCGATCAGGTTGTTTCAGATTTGTGTGTGCATTTTTGGCTTTGATATTGAATTTTTTGAAAGTTTCGGAGTTGGATTTGAATCTTGAGTACAAGCCAGATGTCAGGGAAGACTTAGAGGCTGTGGGGAAGAAACTTGAAGAATGCACCGAAAGGTGTTCGTGCAAATGCCCCAGAGAAAAGCTCATAAGTTACTATGCAGGGTATCTGAAATCTTGCGATAGCTTTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCAAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTAAGCTGGGTTGTAGCTATGGCCTTCGAGGAATTTTTGCTTGTTTGAATGTATTTAAGTCCCCAAGTACCCATCATACCTCTGGATTTGCTGCCTTGCTGTCAAAGGCGCCTGCTCTTCACTCTTGGTTTTCTCGCTATCAATCGTATAGGATTAGGAGGAGGAGTCATTATTGCTTTTGGAAGGATTCTGAGGAGGCACCCCATAAACTGTTATTTTTGGACTTCTATTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

185

Amino Acids

21.47

Weight (kDa)

9.03

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	427, 517
AcsI	RAATTY	2 cut(s)	73, 351
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	3 cut(s)	113, 318, 388
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	73, 82, 103, 161, 284, 367
AluBI	AGCT	5 cut(s)	205, 246, 300, 325, 336
AluI	AGCT	5 cut(s)	205, 246, 300, 325, 336
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	73, 351
AspLEI	GCGC	1 cut(s)	430
BanI	GGYRCC	2 cut(s)	427, 517
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	281, 399
BfoI	RGCGCY	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	429, 519
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpuEI	CTTGAG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bse8I	GATNNNNATC	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	287, 501
BseRI	GAGGAG	3 cut(s)	493, 496, 527
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	427, 517
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	26, 253
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	288, 502
BspLI	GGNNCC	2 cut(s)	429, 519
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	427, 517
BspTI	CTTAAG	1 cut(s)	320
BssMI	GATC	2 cut(s)	26, 253
BssNI	GRCGYC	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	136, 296, 510
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	29, 256
BstMBI	GATC	2 cut(s)	26, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	112, 317, 387
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	9 cut(s)	62, 118, 143, 205, 246, 300, 325, 336, 342
CviKI_1	RGCY	9 cut(s)	62, 118, 143, 205, 246, 300, 325, 336, 342
CviQI	GTAC	3 cut(s)	112, 317, 387
DdeI	CTNAG	3 cut(s)	136, 296, 510
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	2 cut(s)	28, 255
DpnII	GATC	2 cut(s)	26, 253
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
FaeI	CATG	1 cut(s)	278
FaiI	YATR	8 cut(s)	209, 219, 276, 339, 396, 468, 525, 552
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	411
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	411
GsaI	CCCAGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	103, 280, 484, 506
Hpy188I	TCNGA	4 cut(s)	41, 91, 231, 511
Hpy188III	TCNNGA	4 cut(s)	107, 268, 284, 402
HpyAV	CCTTC	2 cut(s)	353, 496
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4V	TGCA	4 cut(s)	53, 168, 186, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	136, 296, 510
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	428
KasI	GGCGCC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	26, 253
LguI	GCTCTTC	1 cut(s)	441
LpnPI	CCDG	9 cut(s)	15, 112, 132, 207, 208, 281, 311, 387, 444
Lsp1109I	GCAGC	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	28, 255
MboI	GATC	2 cut(s)	26, 253
MboII	GAAGA	5 cut(s)	30, 143, 163, 173, 428
MluCI	AATT	2 cut(s)	73, 351
Mly113I	GGCGCC	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	133, 299, 341, 409, 471, 474, 505, 508
MseI	TTAA	4 cut(s)	11, 261, 321, 375
MspCI	CTTAAG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	59
NarI	GGCGCC	1 cut(s)	428
NdeII	GATC	2 cut(s)	26, 253
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	429, 519
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	103, 280, 506
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	492
PluTI	GGCGCC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	429, 519
RsaI	GTAC	3 cut(s)	113, 318, 388
RsaNI	GTAC	3 cut(s)	112, 317, 387
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	11, 261, 321, 375
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	26, 253
SchI	GAGTC	1 cut(s)	493
SetI	ASST	8 cut(s)	34, 179, 207, 248, 302, 327, 338, 401
SfoI	GGCGCC	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	107, 320
SmoI	CTYRAG	2 cut(s)	107, 320
Sse9I	AATT	2 cut(s)	73, 351
SspDI	GGCGCC	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	531
TaqI	TCGA	1 cut(s)	346
TasI	AATT	2 cut(s)	73, 351
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	103, 280, 506
Tru1I	TTAA	4 cut(s)	11, 261, 321, 375
Tru9I	TTAA	4 cut(s)	11, 261, 321, 375
TseI	GCWGC	1 cut(s)	410
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	73, 351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.