Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

13750679 .. 13753491

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTAGAAGAAGGCAAGATCTCATTCCTAGCGCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGTTCAAAGATGAGTATCCCAGCCACCCCTTATCTACCTTTTGCAGTCCAAGACTCGAATTCTCTACAACAAGAGGGACTCGGTGCAAGGAGAAGAAGCACGCCTCCGTCGACTACGCAACGGCACTTACAACCTCTCCACTCATATGGGTGGTTTCGGGAAGGAGACATCCGCAAACACTACCACTTACACGTCAAAATGGAGAGTTTCCGGAAGGACTGGGCCGTCTCGACGTTGTCAATCGAGTCTATCGGCTTCATCGGGGAGACGACATTGACGGCGTGCTCAACGGATGGGTCGGATGCTTTGCCATGAAGAACTTCCCCATCATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

134

Amino Acids

15.09

Weight (kDa)

8.88

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	125
AfeI	AGCGCT	1 cut(s)	33
AflIII	ACRYGT	2 cut(s)	66, 257
AgsI	TTSAA	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	226, 299, 327
Aor13HI	TCCGGA	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	2 cut(s)	354, 401
BceAI	ACGGC	3 cut(s)	204, 276, 361
BciVI	GTATCC	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	226, 299, 327
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	18
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	277
BseGI	GGATG	3 cut(s)	235, 365, 374
BseJI	GATNNNNATC	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	45, 278
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	3 cut(s)	226, 299, 327
BsmBI	CGTCTC	2 cut(s)	299, 327
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	46, 168, 350
BstF5I	GGATG	3 cut(s)	235, 365, 374
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	3 cut(s)	226, 299, 327
BstMBI	GATC	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	235, 365, 374
Cac8I	GCNNGC	3 cut(s)	46, 168, 350
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	2 cut(s)	67, 379
CviJI	RGCY	3 cut(s)	90, 291, 322
CviKI_1	RGCY	3 cut(s)	90, 291, 322
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DrdI	GACNNNNNNGTC	1 cut(s)	291
DseDI	GACNNNNNNGTC	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	125
Esp3I	CGTCTC	2 cut(s)	299, 327
FaeI	CATG	2 cut(s)	70, 382
FaiI	YATR	5 cut(s)	68, 212, 214, 380, 398
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	66, 378
FauNDI	CATATG	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	3 cut(s)	222, 372, 381
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	2 cut(s)	45, 278
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	70, 382
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	120, 145, 312
HpaII	CCGG	2 cut(s)	45, 278
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	225, 278, 296
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	179, 302
HpyAV	CCTTC	3 cut(s)	5, 222, 275
HpyCH4IV	ACGT	2 cut(s)	259, 300
HpyCH4V	TGCA	2 cut(s)	111, 153
HpySE526I	ACGT	2 cut(s)	259, 300
Hsp92II	CATG	2 cut(s)	70, 382
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	58, 100, 272, 291
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	259, 300
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	20, 172, 394
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	2 cut(s)	125, 399
MlyI	GAGTC	3 cut(s)	114, 139, 321
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	134, 181, 211
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	386
MslI	CAYNNNNRTG	2 cut(s)	211, 215
MspI	CCGG	2 cut(s)	45, 278
NaeI	GCCGGC	1 cut(s)	46
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	70, 382
NspI	RCATGY	1 cut(s)	70
PciI	ACATGT	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	302
PleI	GAGTC	3 cut(s)	114, 139, 320
PpsI	GAGTC	3 cut(s)	114, 139, 320
PscI	ACATGT	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	211, 215
SalI	GTCGAC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	3 cut(s)	114, 139, 321
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	5 cut(s)	59, 107, 203, 262, 303
SfaNI	GCATC	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	211, 215
Sse9I	AATT	2 cut(s)	125, 399
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	29
TaiI	ACGT	2 cut(s)	262, 303
TaqI	TCGA	5 cut(s)	36, 123, 177, 297, 310
TasI	AATT	2 cut(s)	125, 399
TspDTI	ATGAA	2 cut(s)	314, 395
TspGWI	ACGGA	2 cut(s)	163, 372
Tth111I	GACNNNGTC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.