Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

48078692 .. 48079297

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG421900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGCACAGGAATGACGTCAGCTTCCCCAAGTTGCTCAAGTCCGTTCTGCTCGACCTCACCGTGTGCCTAGGTCTGCTCTGCTTCTACTACGGCTGGTCCTTCGCTCCGGGCCCCTGCCGCTCCAACGACGAAGAGGCTTCCGATTCGAATGGCTTCGACCCGATTTTCAGTGGCTCCCTCACCCGTCGTGGTCGCGAGGCCGAGCCCCCCCCCAAAGCATTCCTGTATGATAAAACAGAGGTTGCTGTTGCGGCGGTCCACCTTTACGACTTCAAGACAGTCGAGAAGAAGGAGATCGCAAGGAGCAATCGGCCATCAGATCTGATTACATTTCGAAATTTTGCTTATACTAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

120

Amino Acids

13.66

Weight (kDa)

8.46

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	121, 254, 257
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
AoxI	GGCC	3 cut(s)	112, 201, 314
ApaI	GGGCCC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	4 cut(s)	99, 112, 113, 259
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	52, 175
AsuII	TTCGAA	2 cut(s)	149, 337
AvaII	GGWCC	2 cut(s)	99, 259
AvrII	CCTAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	116, 210
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	2 cut(s)	71, 354
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	2 cut(s)	121, 255
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	2 cut(s)	122, 256
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	2 cut(s)	99, 259
BmgT120I	GGNCC	4 cut(s)	99, 112, 113, 259
BmiI	GGNNCC	3 cut(s)	114, 115, 178
BmrFI	CCNGG	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	149, 337
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	114, 203, 316
BsiSI	CCGG	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	114, 203, 316
Bsp119I	TTCGAA	2 cut(s)	149, 337
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	116, 210
Bsp143I	GATC	2 cut(s)	297, 322
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	3 cut(s)	121, 254, 257
BspANI	GGCC	3 cut(s)	114, 203, 316
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	114, 115, 178
BspT104I	TTCGAA	2 cut(s)	149, 337
BsrBI	CCGCTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	297, 322
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	64, 283
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	2 cut(s)	149, 337
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	300, 325
BstMBI	GATC	2 cut(s)	297, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 254
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	114, 203, 316
BtsIMutI	CAGTG	1 cut(s)	178
BtuMI	TCGCGA	1 cut(s)	198
Cfr13I	GGNCC	4 cut(s)	99, 112, 113, 259
CviJI	RGCY	9 cut(s)	24, 96, 114, 140, 156, 177, 203, 208, 316
CviKI_1	RGCY	9 cut(s)	24, 96, 114, 140, 156, 177, 203, 208, 316
DpnI	GATC	2 cut(s)	299, 324
DpnII	GATC	2 cut(s)	297, 322
DraIII	CACNNNGTG	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	116, 210
Eco47I	GGWCC	2 cut(s)	99, 259
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	116, 210
ErhI	CCWWGG	1 cut(s)	70
FaiI	YATR	2 cut(s)	231, 351
Fnu4HI	GCNGC	2 cut(s)	121, 255
FriOI	GRGCYC	2 cut(s)	116, 210
Fsp4HI	GCNGC	2 cut(s)	121, 255
FspBI	CTAG	2 cut(s)	71, 354
GluI	GCNGC	2 cut(s)	121, 255
HaeIII	GGCC	3 cut(s)	114, 203, 316
HapII	CCGG	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	52, 175
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	145, 322, 327
Hpy188III	TCNNGA	3 cut(s)	197, 277, 286
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	134, 192
HpyAV	CCTTC	2 cut(s)	112, 286
HpyCH4III	ACNGT	2 cut(s)	64, 283
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 254
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	297, 322
LmnI	GCTCC	4 cut(s)	112, 128, 182, 306
LpnPI	CCDG	4 cut(s)	82, 123, 130, 239
MaeI	CTAG	2 cut(s)	71, 354
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	299, 324
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	297, 322
MboII	GAAGA	2 cut(s)	146, 301
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	116, 210
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	68, 130, 191, 193, 235
MroXI	GAANNNNTTC	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	221
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	120, 254
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	297, 322
NlaIV	GGNNCC	3 cut(s)	114, 115, 178
NmeAIII	GCCGAG	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	198
NspV	TTCGAA	2 cut(s)	149, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	122, 256
PspN4I	GGNNCC	3 cut(s)	114, 115, 178
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	4 cut(s)	99, 112, 113, 259
PsuI	RGATCY	1 cut(s)	322
RruI	TCGCGA	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	2 cut(s)	121, 255
Sau3AI	GATC	2 cut(s)	297, 322
Sau96I	GGNCC	4 cut(s)	99, 112, 113, 259
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	116, 210
SetI	ASST	6 cut(s)	21, 26, 60, 76, 246, 267
SfuI	TTCGAA	2 cut(s)	149, 337
SinI	GGWCC	2 cut(s)	99, 259
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	121, 254, 257
SspMI	CTAG	2 cut(s)	71, 354
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	64, 283
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	54, 149, 159, 285, 337
TasI	AATT	1 cut(s)	340
TauI	GCSGC	2 cut(s)	123, 257
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	99, 259
XapI	RAATTY	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	71, 354
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.