Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

19963387 .. 19985497

Gene Structure 22111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCCACTCTAGTATCTCAACCACCCCACCTCCACCTTCCGCAGTCCAAGACCCGAACTCTCTGCAACAAGCTCAGAAAGAGCGACTCAGTAGCTTTCAAGGAGAAGAAGCACTTCTCTGTCGACTACGACAGCGGCACTCACCACCTCTCCACTCATATCGGCGACTTCAGGAAGCGAGACATCCCCAAACACCACCGCTTACGTGATGAAATGAAGCGTTTCCAGAAAGACTGGGCCGTCTCCGACATCGTCAATCGGATCTATCAGCTCAGTCGTGATGACGACATTGACGGCGTGCTCAATCAATGGGTCGGACGCTTCGCCAGGAAGAACTTCCCCATCCTAATTAGAGAAATGACGAAGAGCACTGTATGCAAGTGTTCCGGTGATCCCACAAAGCCAGAGCTCAGTCGCTGTCCTCCACCGTTGATCTCATCTTCAAGTTTCGCAACCTCCGCATCTTTGAGACCCACGGAGAGGGAGAGAGAAAAGGCAGAGAAAGCAAGCGAAAGTGGAAAACTGATTTGTCTGCCTCCCCCAACATTTTCAGTGAAAGATTCAAAAGCGTGTGGATTTGAGTTAACAACAGGCCCACGTAAAAAAACAACGACCGAAGACAGATTGGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

9.64

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	4 cut(s)	41, 135, 199, 459
AclWI	GGATC	2 cut(s)	269, 386
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	100, 444, 564
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	73, 95, 271, 409
AluI	AGCT	4 cut(s)	73, 95, 271, 409
Alw21I	GWGCWC	3 cut(s)	303, 371, 411
Alw26I	GTCTC	3 cut(s)	174, 247, 463
AlwI	GGATC	2 cut(s)	269, 386
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	3, 237, 592
Asp700I	GAANNNNTTC	3 cut(s)	113, 221, 335
AspS9I	GGNCC	2 cut(s)	237, 593
AsuHPI	GGTGA	2 cut(s)	134, 401
BaeI	ACNNNNGTAYC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	3 cut(s)	303, 371, 411
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	224, 310
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	174, 247, 463
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	237, 593
BmrFI	CCNGG	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	624
BsaAI	YACGTR	2 cut(s)	206, 599
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	2 cut(s)	183, 342
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	4 cut(s)	88, 102, 286, 424
BseNI	ACTGG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	5, 239, 594
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	3 cut(s)	303, 371, 411
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	3 cut(s)	174, 247, 463
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	5, 239, 594
Bso31I	GGTCTC	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	303, 371, 411
Bsp143I	GATC	3 cut(s)	261, 391, 432
BspACI	CCGC	4 cut(s)	41, 135, 199, 459
BspANI	GGCC	3 cut(s)	5, 239, 594
BspCNI	CTCAG	4 cut(s)	87, 101, 285, 423
BspPI	GGATC	2 cut(s)	269, 386
BspQI	GCTCTTC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	261, 391, 432
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	373, 429
Bst6I	CTCTTC	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstBAI	YACGTR	2 cut(s)	206, 599
BstC8I	GCNNGC	2 cut(s)	299, 508
BstDEI	CTNAG	4 cut(s)	74, 88, 272, 410
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	183, 342
BstKTI	GATC	3 cut(s)	264, 394, 435
BstMAI	GTCTC	3 cut(s)	174, 247, 463
BstMBI	GATC	3 cut(s)	261, 391, 432
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 458, 503
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	5, 239, 594
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	183, 342
BtsIMutI	CAGTG	2 cut(s)	369, 558
Cac8I	GCNNGC	2 cut(s)	299, 508
CaiI	CAGNNNCTG	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	237, 593
CseI	GACGC	1 cut(s)	327
CviJI	RGCY	8 cut(s)	5, 73, 95, 239, 271, 403, 409, 594
CviKI_1	RGCY	8 cut(s)	5, 73, 95, 239, 271, 403, 409, 594
DdeI	CTNAG	4 cut(s)	74, 88, 272, 410
DpnI	GATC	3 cut(s)	263, 393, 434
DpnII	GATC	3 cut(s)	261, 391, 432
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	2 cut(s)	159, 376
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	170, 329
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	5, 239, 594
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	124, 585
HindII	GTYRAC	2 cut(s)	124, 585
HinfI	GANTC	2 cut(s)	86, 560
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	2 cut(s)	134, 401
Hpy166II	GTNNAC	2 cut(s)	124, 585
Hpy188I	TCNGA	4 cut(s)	77, 247, 261, 317
Hpy188III	TCNNGA	3 cut(s)	172, 226, 278
Hpy8I	GTNNAC	2 cut(s)	124, 585
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	373, 429
HpyCH4IV	ACGT	2 cut(s)	205, 598
HpyCH4V	TGCA	2 cut(s)	66, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 458, 503
HpyF3I	CTNAG	4 cut(s)	74, 88, 272, 410
HpySE526I	ACGT	2 cut(s)	205, 598
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	261, 391, 432
LguI	GCTCTTC	1 cut(s)	359
LpnPI	CCDG	8 cut(s)	157, 220, 239, 313, 340, 400, 417, 576
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	205, 598
MalI	GATC	3 cut(s)	263, 393, 434
MboI	GATC	3 cut(s)	261, 391, 432
MboII	GAAGA	5 cut(s)	118, 343, 376, 432, 629
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	303, 371, 411
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	270, 295
MnlI	CCTC	7 cut(s)	41, 158, 432, 466, 474, 546, 623
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	113, 221, 335
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	584, 634
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	375, 458, 503
NdeII	GATC	3 cut(s)	261, 391, 432
PciSI	GCTCTTC	1 cut(s)	359
PdmI	GAANNNNTTC	3 cut(s)	113, 221, 335
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	2 cut(s)	206, 599
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	237, 593
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	584, 634
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	3 cut(s)	261, 391, 432
Sau96I	GGNCC	2 cut(s)	237, 593
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	3 cut(s)	303, 371, 411
SfaNI	GCATC	1 cut(s)	470
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	4 cut(s)	41, 135, 199, 459
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	373, 429
TaiI	ACGT	2 cut(s)	208, 601
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	584, 634
Tru9I	TTAA	2 cut(s)	584, 634
TscAI	CASTG	2 cut(s)	376, 558
TspDTI	ATGAA	2 cut(s)	225, 230
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	376, 558
Tth111I	GACNNNGTC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	3 cut(s)	113, 221, 335
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.