Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

17359136 .. 17360801

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCACAAGTCGATTTGGAAACCCTAGTTGCGGCCTGCGCCGGGGGCTCAATGGATCGGAAAATCGCCTGCGAGACGCAGGCCGATGGCGGAGACCATGACCGGCCGGAAGACGAAGCCGCCGACGCCGACGAACCGGTTGTGGCGGCGGATTTCCCGCCGGAGTCGTTCTGGCTGTCGAAGGACGCCGAGTACGACTGGTTCGACCGGAACGCCTTCTACGAGAGGAAGGACTCCACCAAAGGAAGCAACTCCAACTCCACGAACCTGCATCCGAATTCGAACAACAATTCGCAGCGGTTCTCGAAGAACTTGAAGTCCAAGGCGGCGATTATTGGCCTACCGAAGCCGCAGAAGACGAACTACGCCGATACGAAGCACCGGAGGAACTGTAAGGTCGGGAACGGGAGGTTGTTTCCGAAGCGGTCCGGATCGGTCGGGAAATCGACGGACGGGTCGATGATCGAGCCGTCGTCGCCGAAGGTTTCGTGCATGGGGAGGGTCAGATCGAAGCGGGACCGGAAGCGGCGGTGGAGGAACCGGCAGCGGTCGAGCAACGACGCGTCGTCGATGGAGAAGTCGGTTAAACCGGTCGAGAGACGGAAGTCCGGGTTTCTAGCGAGTTTTCGGGGGTTGTTTCGGCACGGCCGCCGAGGTAAGTCGAAGAGTGACAGCCACGCGCCGTTTGGTGCGGCGGAGTCGCCGCCGAGAAGGAGCAGCATGGCGAGGAGAGCGGCGTTCGACTACGAAACGGCGTCGTGCGACTCGCTGCCGAGGCAGAGCACGGAGAGCGAACCGCCCGGTCTGGGCGGGATGAAGCGGTTCGTGTCGGGTCGGAAATCCGGGTCGTGGGTCGGGGAGCACGGCATCGACGTCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

293

Amino Acids

32.38

Weight (kDa)

9.86

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AatII	GACGTC	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	734
AccII	CGCG	3 cut(s)	563, 680, 878
AccIII	TCCGGA	1 cut(s)	428
AclWI	GGATC	2 cut(s)	63, 439
AcoI	YGGCCR	2 cut(s)	104, 646
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	4 cut(s)	126, 186, 755, 873
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	31, 42, 806, 849
AflIII	ACRYGT	1 cut(s)	561
AgeI	ACCGGT	2 cut(s)	136, 589
AgsI	TTSAA	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
Alw21I	GWGCWC	2 cut(s)	785, 864
Alw26I	GTCTC	3 cut(s)	68, 87, 592
AlwI	GGATC	2 cut(s)	63, 439
Aor13HI	TCCGGA	1 cut(s)	428
AoxI	GGCC	5 cut(s)	33, 81, 104, 337, 646
ApeKI	GCWGC	4 cut(s)	295, 544, 717, 769
ApoI	RAATTY	1 cut(s)	277
AsiGI	ACCGGT	2 cut(s)	136, 589
Asp700I	GAANNNNTTC	2 cut(s)	215, 821
AspLEI	GCGC	2 cut(s)	41, 682
AspS9I	GGNCC	2 cut(s)	426, 517
AsuC2I	CCSGG	4 cut(s)	43, 610, 801, 844
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	426, 517
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	2 cut(s)	117, 362
Bbv12I	GWGCWC	2 cut(s)	785, 864
BbvI	GCAGC	4 cut(s)	307, 556, 729, 756
BccI	CCATC	2 cut(s)	80, 565
BceAI	ACGGC	5 cut(s)	454, 661, 667, 768, 880
BcgI	CGANNNNNNTGC	1 cut(s)	856
BcnI	CCSGG	4 cut(s)	43, 610, 801, 844
BcoDI	GTCTC	3 cut(s)	68, 87, 592
BfaI	CTAG	2 cut(s)	26, 617
BfuAI	ACCTGC	1 cut(s)	276
Bme1390I	CCNGG	4 cut(s)	43, 610, 801, 844
Bme18I	GGWCC	2 cut(s)	426, 517
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	426, 517
BmiI	GGNNCC	2 cut(s)	518, 539
BmrFI	CCNGG	4 cut(s)	43, 610, 801, 844
BmsI	GCATC	2 cut(s)	280, 876
BoxI	GACNNNNGTC	1 cut(s)	604
BpiI	GAAGAC	2 cut(s)	117, 362
Bpu14I	TTCGAA	1 cut(s)	281
BpuMI	CCSGG	4 cut(s)	43, 610, 801, 844
BsaHI	GRCGYC	4 cut(s)	126, 186, 755, 873
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	42, 321, 652, 773
BsaWI	WCCGGW	6 cut(s)	136, 207, 381, 428, 519, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 376, 406
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 42, 806, 849
Bse118I	RCCGGY	4 cut(s)	102, 136, 540, 589
Bse1I	ACTGG	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	428
BseDI	CCNNGG	4 cut(s)	42, 321, 652, 773
BseGI	GGATG	2 cut(s)	271, 819
BseLI	CCNNNNNNNGG	4 cut(s)	31, 42, 806, 849
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	742
BseX3I	CGGCCG	2 cut(s)	104, 646
BseXI	GCAGC	4 cut(s)	307, 556, 729, 756
Bsh1236I	CGCG	3 cut(s)	563, 680, 878
Bsh1285I	CGRYCG	6 cut(s)	107, 208, 438, 551, 594, 649
BshFI	GGCC	5 cut(s)	35, 83, 106, 339, 648
BshTI	ACCGGT	2 cut(s)	136, 589
BsiEI	CGRYCG	6 cut(s)	107, 208, 438, 551, 594, 649
BsiHKAI	GWGCWC	2 cut(s)	785, 864
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	4 cut(s)	31, 42, 806, 849
BsmAI	GTCTC	3 cut(s)	68, 87, 592
BsmBI	CGTCTC	2 cut(s)	68, 592
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	5 cut(s)	35, 83, 106, 339, 648
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	50, 785, 864
Bsp13I	TCCGGA	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	55, 431, 462, 506
BspANI	GGCC	5 cut(s)	35, 83, 106, 339, 648
BspEI	TCCGGA	1 cut(s)	428
BspFNI	CGCG	3 cut(s)	563, 680, 878
BspLI	GGNNCC	2 cut(s)	518, 539
BspMI	ACCTGC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	63, 439
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	87
BsrBI	CCGCTC	1 cut(s)	734
BsrFI	RCCGGY	4 cut(s)	102, 136, 540, 589
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	4 cut(s)	102, 136, 540, 589
BssECI	CCNNGG	4 cut(s)	42, 321, 652, 773
BssMI	GATC	4 cut(s)	55, 431, 462, 506
BssNI	GRCGYC	4 cut(s)	126, 186, 755, 873
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	659
BstACI	GRCGYC	4 cut(s)	126, 186, 755, 873
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	37, 70, 81
BstF5I	GGATG	2 cut(s)	271, 819
BstFNI	CGCG	3 cut(s)	563, 680, 878
BstHHI	GCGC	2 cut(s)	41, 682
BstKTI	GATC	4 cut(s)	58, 434, 465, 509
BstMAI	GTCTC	3 cut(s)	68, 87, 592
BstMBI	GATC	4 cut(s)	55, 431, 462, 506
BstMCI	CGRYCG	6 cut(s)	107, 208, 438, 551, 594, 649
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 45, 125, 475, 731, 775, 789
BstPAI	GACNNNNGTC	1 cut(s)	604
BstSCI	CCNGG	4 cut(s)	41, 608, 799, 842
BstUI	CGCG	3 cut(s)	563, 680, 878
BstV1I	GCAGC	4 cut(s)	307, 556, 729, 756
BstV2I	GAAGAC	2 cut(s)	117, 362
BstZI	CGGCCG	2 cut(s)	104, 646
BsuRI	GGCC	5 cut(s)	35, 83, 106, 339, 648
BtsCI	GGATG	2 cut(s)	271, 819
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	37, 70, 81
CfoI	GCGC	2 cut(s)	41, 682
Cfr10I	RCCGGY	4 cut(s)	102, 136, 540, 589
Cfr13I	GGNCC	2 cut(s)	426, 517
CpoI	CGGWCCG	1 cut(s)	426
CseI	GACGC	6 cut(s)	85, 134, 194, 552, 569, 744
Csp6I	GTAC	1 cut(s)	193
CspAI	ACCGGT	2 cut(s)	136, 589
CspI	CGGWCCG	1 cut(s)	426
CviAII	CATG	3 cut(s)	98, 493, 721
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	4 cut(s)	57, 433, 464, 508
DpnII	GATC	4 cut(s)	55, 431, 462, 506
DrdI	GACNNNNNNGTC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	104, 646
EagI	CGGCCG	2 cut(s)	104, 646
Eam1104I	CTCTTC	1 cut(s)	659
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	659
EciI	GGCGGA	3 cut(s)	105, 164, 710
EclXI	CGGCCG	2 cut(s)	104, 646
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	426, 517
Eco52I	CGGCCG	2 cut(s)	104, 646
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	2 cut(s)	68, 592
FaeI	CATG	3 cut(s)	101, 496, 724
FaiI	YATR	3 cut(s)	99, 494, 722
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	97, 492, 720
FauI	CCCGC	3 cut(s)	165, 507, 803
FokI	GGATG	2 cut(s)	258, 826
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	26, 617
GlaI	GCGC	2 cut(s)	40, 681
HaeIII	GGCC	5 cut(s)	35, 83, 106, 339, 648
HgaI	GACGC	6 cut(s)	85, 134, 194, 552, 569, 744
HhaI	GCGC	2 cut(s)	41, 682
Hin1I	GRCGYC	4 cut(s)	126, 186, 755, 873
Hin1II	CATG	3 cut(s)	101, 496, 724
Hin6I	GCGC	2 cut(s)	39, 680
HinP1I	GCGC	2 cut(s)	39, 680
HinfI	GANTC	4 cut(s)	164, 233, 698, 764
Hpy188I	TCNGA	5 cut(s)	60, 276, 420, 506, 837
Hpy188III	TCNNGA	5 cut(s)	304, 400, 429, 439, 595
HpyAV	CCTTC	5 cut(s)	175, 223, 226, 475, 705
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	2 cut(s)	271, 492
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 45, 125, 475, 731, 775, 789
HpySE526I	ACGT	1 cut(s)	873
Hsp92I	GRCGYC	4 cut(s)	126, 186, 755, 873
Hsp92II	CATG	3 cut(s)	101, 496, 724
HspAI	GCGC	2 cut(s)	39, 680
Kpn2I	TCCGGA	1 cut(s)	428
Kzo9I	GATC	4 cut(s)	55, 431, 462, 506
LmnI	GCTCC	2 cut(s)	714, 859
Lsp1109I	GCAGC	4 cut(s)	307, 556, 729, 756
LweI	GCATC	2 cut(s)	280, 876
MaeI	CTAG	2 cut(s)	26, 617
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	4 cut(s)	57, 433, 464, 508
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	4 cut(s)	55, 431, 462, 506
MboII	GAAGA	4 cut(s)	122, 319, 367, 676
MhlI	GDGCHC	3 cut(s)	50, 785, 864
MluCI	AATT	2 cut(s)	277, 289
MluI	ACGCGT	1 cut(s)	561
MlyI	GAGTC	4 cut(s)	173, 227, 707, 758
MmeI	TCCRAC	2 cut(s)	279, 815
MnlI	CCTC	8 cut(s)	219, 378, 402, 492, 528, 647, 720, 768
MroI	TCCGGA	1 cut(s)	428
MroXI	GAANNNNTTC	2 cut(s)	215, 821
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	298, 547
MspR9I	CCNGG	4 cut(s)	43, 610, 801, 844
MvnI	CGCG	3 cut(s)	563, 680, 878
MwoI	GCNNNNNNNGC	7 cut(s)	38, 45, 125, 475, 731, 775, 789
NciI	CCSGG	4 cut(s)	43, 610, 801, 844
NdeII	GATC	4 cut(s)	55, 431, 462, 506
NlaIII	CATG	3 cut(s)	101, 496, 724
NlaIV	GGNNCC	2 cut(s)	518, 539
NmeAIII	GCCGAG	4 cut(s)	214, 677, 732, 798
NmuCI	GTSAC	1 cut(s)	668
NspV	TTCGAA	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	6 cut(s)	120, 192, 201, 219, 455, 870
PdmI	GAANNNNTTC	2 cut(s)	215, 821
PinAI	ACCGGT	2 cut(s)	136, 589
PleI	GAGTC	4 cut(s)	172, 227, 706, 758
PpsI	GAGTC	4 cut(s)	172, 227, 706, 758
PshAI	GACNNNNGTC	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	518, 539
PspPI	GGNCC	2 cut(s)	426, 517
PsrI	GAACNNNNNNTAC	4 cut(s)	185, 203, 217, 235
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
Rsr2I	CGGWCCG	1 cut(s)	426
RsrII	CGGWCCG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	585
Sau3AI	GATC	4 cut(s)	55, 431, 462, 506
Sau96I	GGNCC	2 cut(s)	426, 517
SchI	GAGTC	4 cut(s)	173, 227, 707, 758
ScrFI	CCNGG	4 cut(s)	43, 610, 801, 844
SduI	GDGCHC	3 cut(s)	50, 785, 864
SetI	ASST	6 cut(s)	270, 399, 413, 486, 658, 876
SfaNI	GCATC	2 cut(s)	280, 876
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	2 cut(s)	426, 517
Sse9I	AATT	2 cut(s)	277, 289
SspMI	CTAG	2 cut(s)	26, 617
StyD4I	CCNGG	4 cut(s)	41, 608, 799, 842
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	1 cut(s)	876
TaqII	GACCGA	1 cut(s)	424
TasI	AATT	2 cut(s)	277, 289
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	4 cut(s)	295, 544, 717, 769
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	1 cut(s)	830
TspGWI	ACGGA	3 cut(s)	464, 616, 800
VpaK11BI	GGWCC	2 cut(s)	426, 517
XapI	RAATTY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmnI	GAANNNNTTC	2 cut(s)	215, 821
XspI	CTAG	2 cut(s)	26, 617
ZraI	GACGTC	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.