Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41720 AT2G41720 AT2G41720 |
| fragaria_vesca | FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 |
| malus_domestica | MD12G1080100.v1.1 |
| prunus_persica | Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0482651 |
| rosa_laevigata | RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501 |
| rosa_multiflora | Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600 |
| rosa_rugosa | Rorug03G0197600 Rorug03G0197700 |
| rosa_samantha | Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100 |
| rosa_wichuraiana | Rw3G022490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 327 |
| AccI | GTMKAC | 2 cut(s) | 207, 298 |
| AciI | CCGC | 2 cut(s) | 249, 287 |
| AcsI | RAATTY | 1 cut(s) | 135 |
| AcuI | CTGAAG | 1 cut(s) | 101 |
| AfaI | GTAC | 1 cut(s) | 87 |
| AflII | CTTAAG | 1 cut(s) | 290 |
| AgsI | TTSAA | 3 cut(s) | 8, 82, 184 |
| AhlI | ACTAGT | 1 cut(s) | 88 |
| AjiI | CACGTC | 1 cut(s) | 199 |
| AluBI | AGCT | 1 cut(s) | 73 |
| AluI | AGCT | 1 cut(s) | 73 |
| Alw26I | GTCTC | 2 cut(s) | 53, 205 |
| ApoI | RAATTY | 1 cut(s) | 135 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 123, 157 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 53, 205 |
| BcuI | ACTAGT | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 89 |
| BfrI | CTTAAG | 1 cut(s) | 290 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BmgBI | CACGTC | 1 cut(s) | 199 |
| BmrI | ACTGGG | 1 cut(s) | 332 |
| BmuI | ACTGGG | 1 cut(s) | 332 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 93, 123, 218, 248 |
| Bse1I | ACTGG | 1 cut(s) | 327 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 327 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseYI | CCCAGC | 1 cut(s) | 96 |
| BsmAI | GTCTC | 2 cut(s) | 53, 205 |
| BsmBI | CGTCTC | 1 cut(s) | 205 |
| Bsp143I | GATC | 1 cut(s) | 265 |
| BspACI | CCGC | 2 cut(s) | 249, 287 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspTI | CTTAAG | 1 cut(s) | 290 |
| BsrI | ACTGG | 1 cut(s) | 327 |
| BssMI | GATC | 1 cut(s) | 265 |
| BstAFI | CTTAAG | 1 cut(s) | 290 |
| BstDEI | CTNAG | 1 cut(s) | 172 |
| BstKTI | GATC | 1 cut(s) | 268 |
| BstMAI | GTCTC | 2 cut(s) | 53, 205 |
| BstMBI | GATC | 1 cut(s) | 265 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BtrI | CACGTC | 1 cut(s) | 199 |
| CseI | GACGC | 1 cut(s) | 284 |
| Csp6I | GTAC | 1 cut(s) | 86 |
| CviAII | CATG | 1 cut(s) | 302 |
| CviJI | RGCY | 3 cut(s) | 73, 100, 151 |
| CviKI_1 | RGCY | 3 cut(s) | 73, 100, 151 |
| CviQI | GTAC | 1 cut(s) | 86 |
| DdeI | CTNAG | 1 cut(s) | 172 |
| DpnI | GATC | 1 cut(s) | 267 |
| DpnII | GATC | 1 cut(s) | 265 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 327 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 327 |
| Eco57I | CTGAAG | 1 cut(s) | 101 |
| EcoRI | GAATTC | 1 cut(s) | 135 |
| Esp3I | CGTCTC | 1 cut(s) | 205 |
| FaeI | CATG | 1 cut(s) | 305 |
| FaiI | YATR | 5 cut(s) | 18, 23, 213, 243, 303 |
| FatI | CATG | 1 cut(s) | 301 |
| FblI | GTMKAC | 2 cut(s) | 207, 298 |
| FspBI | CTAG | 1 cut(s) | 89 |
| GsaI | CCCAGC | 1 cut(s) | 100 |
| HgaI | GACGC | 1 cut(s) | 284 |
| Hin1II | CATG | 1 cut(s) | 305 |
| HincII | GTYRAC | 2 cut(s) | 208, 299 |
| HindII | GTYRAC | 2 cut(s) | 208, 299 |
| HinfI | GANTC | 2 cut(s) | 4, 170 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 299 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 335 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 256, 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 299 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 300 |
| HpyAV | CCTTC | 2 cut(s) | 76, 125 |
| HpyCH4IV | ACGT | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 2 cut(s) | 25, 144 |
| HpyF3I | CTNAG | 1 cut(s) | 172 |
| HpySE526I | ACGT | 1 cut(s) | 198 |
| Hsp92II | CATG | 1 cut(s) | 305 |
| Kzo9I | GATC | 1 cut(s) | 265 |
| LmnI | GCTCC | 1 cut(s) | 305 |
| LpnPI | CCDG | 4 cut(s) | 110, 241, 308, 327 |
| MaeI | CTAG | 1 cut(s) | 89 |
| MaeII | ACGT | 1 cut(s) | 198 |
| MalI | GATC | 1 cut(s) | 267 |
| MboI | GATC | 1 cut(s) | 265 |
| MboII | GAAGA | 1 cut(s) | 202 |
| MluCI | AATT | 3 cut(s) | 26, 77, 135 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MnlI | CCTC | 4 cut(s) | 71, 116, 119, 242 |
| MseI | TTAA | 1 cut(s) | 291 |
| MspA1I | CMGCKG | 1 cut(s) | 73 |
| MspCI | CTTAAG | 1 cut(s) | 290 |
| NdeII | GATC | 1 cut(s) | 265 |
| NlaIII | CATG | 1 cut(s) | 305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 204 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PflFI | GACNNNGTC | 1 cut(s) | 324 |
| PleI | GAGTC | 1 cut(s) | 164 |
| PpsI | GAGTC | 1 cut(s) | 164 |
| PspFI | CCCAGC | 1 cut(s) | 96 |
| PsyI | GACNNNGTC | 1 cut(s) | 324 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RsaI | GTAC | 1 cut(s) | 87 |
| RsaNI | GTAC | 1 cut(s) | 86 |
| SalI | GTCGAC | 2 cut(s) | 206, 297 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| Sau3AI | GATC | 1 cut(s) | 265 |
| SchI | GAGTC | 1 cut(s) | 164 |
| SetI | ASST | 7 cut(s) | 46, 63, 75, 87, 117, 201, 234 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| SpeI | ACTAGT | 1 cut(s) | 88 |
| Sse9I | AATT | 3 cut(s) | 26, 77, 135 |
| SsiI | CCGC | 2 cut(s) | 249, 287 |
| SspMI | CTAG | 1 cut(s) | 89 |
| TaiI | ACGT | 1 cut(s) | 201 |
| TaqI | TCGA | 4 cut(s) | 51, 207, 268, 298 |
| TasI | AATT | 3 cut(s) | 26, 77, 135 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TspGWI | ACGGA | 2 cut(s) | 193, 333 |
| Tth111I | GACNNNGTC | 1 cut(s) | 324 |
| Vha464I | CTTAAG | 1 cut(s) | 290 |
| XapI | RAATTY | 1 cut(s) | 135 |
| XmiI | GTMKAC | 2 cut(s) | 207, 298 |
| XspI | CTAG | 1 cut(s) | 89 |