Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Reverse (-)

61621967 .. 61622299

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAAGCACAGGAATGACGTCAGCTTCCCCAAGTTGCTCAAGTCCTTTCTGCTCGACCTCACTGTGTGCCTAAGTCTGCTCTGCTTCTACTACGGCTGGTCCTTCGCTCCGGGCCCCTGCAGCTCCAACGACGAAGAGGCTTCCGATTCGAATGTCTTCGACCCGATTTTCAATGGCTCCCTCAACCGTCGTCGTCGCGAGGCCGAGTTCCCCCCCCCCCCCCCAAAGCATTCCTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

80

Amino Acids

9.17

Weight (kDa)

6.7

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	24, 123
AluI	AGCT	2 cut(s)	24, 123
AoxI	GGCC	2 cut(s)	112, 201
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	99, 112, 113
AsuC2I	CCSGG	1 cut(s)	111
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	3 cut(s)	99, 112, 113
BmiI	GGNNCC	3 cut(s)	114, 115, 178
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	114, 203
BsiSI	CCGG	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	114, 203
Bsp119I	TTCGAA	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp68I	TCGCGA	1 cut(s)	198
BspANI	GGCC	2 cut(s)	114, 203
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	114, 115, 178
BspMAI	CTGCAG	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	149
BssNI	GRCGYC	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	64, 188
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	114, 203
BtsIMutI	CAGTG	1 cut(s)	60
BtuMI	TCGCGA	1 cut(s)	198
Cfr13I	GGNCC	3 cut(s)	99, 112, 113
CviJI	RGCY	7 cut(s)	24, 96, 114, 123, 140, 177, 203
CviKI_1	RGCY	7 cut(s)	24, 96, 114, 123, 140, 177, 203
DdeI	CTNAG	1 cut(s)	71
DraIII	CACNNNGTG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	114, 203
HapII	CCGG	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	4 cut(s)	134, 192, 195, 198
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	64, 188
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	112, 128, 182
LpnPI	CCDG	3 cut(s)	82, 123, 130
Lsp1109I	GCAGC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	18
MboII	GAAGA	2 cut(s)	146, 148
MhlI	GDGCHC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	68, 130, 191, 193
MroXI	GAANNNNTTC	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	111
NlaIV	GGNNCC	3 cut(s)	114, 115, 178
NmeAIII	GCCGAG	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	149
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	114, 115, 178
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	99, 112, 113
PstI	CTGCAG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	1 cut(s)	121
Sau96I	GGNCC	3 cut(s)	99, 112, 113
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	21, 26, 60, 125
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	64, 188
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	54, 149, 159
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.