Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

28687400 .. 28694875

Gene Structure 7476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGCACACAATCCCAATGGCCACTCTAGTATCCCAGCCACCCCTCCTCCACCTTCCGCAGTCCAAGACCCGAATTCTCTGCAACAAGCCCAACAACAACAACAAGAAGAAGACCGACTCAGCAGCATTCAAGGAGAAGAAGCACGTCTCCGTCGACTACGACAGCGGCACTCACCACCTCTCCACTCATATCGGCGGCTTCAGGAAGCGAGACATCCCCAAACACCACCGCTTACGCGTCGAAACGGAGCGTTTCCAGAAGGACTGGGCCGTCTCCGACGTCGTCCATCGGGTCTATCAGCTCCGTCGCGGTGACGACATTGACGGCGTGCTCAATCGATGGGTCGGACGCTTCGCCAGGAAGAACTTCCCCATCCTAATTAGAGAAATGACGGCGAGGGGGTCGGTGGAGCACTGTATGCAAGTGTTCCGGTGGATGAAGACCCTCAAGAACTACTGTGCTCGCACTGATATTTATAACATGTTGATCAGATTGCACGCCAGGCATAATCTTGTTGATCAAGCTCGCGGCTTGTTTTTCGAAATGCAAGAATGGAGGTGCAAGCCTGATGCTGAGTCCTACAATGCTCTTATCAATGCACATGGTCGAGCAGGTCAATGGCGCTGGGCCATGAACATTATGGATGACATGCTGCGTGCTGCTATCCCTCCTAGTCGGTCAACATATAACAACTTGATCAATGCATGTGGATCTAGTGGAAATTGGAGAGAAGCTTTAAAAGTTTGCAAGAAAATGACAGATAATGGAGTTGGACCTGATCTTGTGACTCACAATATTGTTTTATCTGCATACAAAACTGGGGCTCAATATTCAAAAGCTTTATCTTATTTTGAACTTATGAAGGGAACAAATATCCGTCCAGACACAACGACCCTCAATATTGTTATATATTGCCTAGTGAAGCTTGGACAGTATGGGAAAGCCATTGATATTTTCAATTCCATGAGAGATAAGGGAGCAGAATGTCGCCCTGACATCGTAACATTCACCAGCATCATTCATTTGTATTCTGTGAGCGGGCAGATAGACAACTGCACAGCCGTATTTAATACAATTCTTGCAGAAGGGCTAAAACCTAACATTGTTTCCTATAATGCACTATTAGGTGCATATGCTTCACATGGGATGTGCACAGAGGCGGCATCAGTATTTAATGAGATGAAGAAAAGTAGTTTTCGGCCAGATGTTGTGTCTTATACATCTCTACTCAATGCTTATGGAAGATCACGACATCCTAAGAAGGCTAGGGAAGTTTTTGACAGGATGAAGGCCAACCACTTGAAGCCAAACCTTGTGAGCTACAACACACTGATTAATGCCTATGGATCCAGTGGTTTATTAGCCGAAGCTGTTAAGGTCTTGCGTGAGATGGAGCAAAATGGAATTCATCCAAACATTGTCTCAATATGTACCCTTTTGGCTGCTTGCGGACAATGTGGCCAGAAGGTGAAAATTGATGCCATACTTTCAGCAGCCAAGCTACGAGGCATTGAATTGAACACAATTGCCTATAATTCGGCTATTGGGAGCTATATGAATTTGGGAGAACATGAGAAAGCTATAAACTTGTATCAATCTATGAGAAAGAAGAAAGTGAAATCGGATTCTGTTACTTACAATGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATACAGTGAGGCACTAACCTTTTTTGATGAAATGGTGGATTTGAAAATTCCTATGTCCAAAGAAGTCTACTCATCTGTGCTCTGTGCCTACAACAAGAAGGGCCAACTTACGGAAGCGGAATCTGTATTCAACTCAATGAAGATGGCTGGATGTCCTCCTGATGTAGTTACATATACTGCAATGTTACATGCATATAGTGCTGCAGAGAATTGGGAAAAGGCTTGTGAGCTATTTCAAGAAATGGAAATAAATGGCATCCAACCAGATGCTATCGCATGTTCAGCTCTGATGAGAGCTTTTAACAAAGGAGGCCATCCCTCTAGAGTTCTTTTTCTGGCAGAACTCATGAGAGAAAAAGAAATTCCTTTCAATGATGCCATTTTCTTTGAAATGGTTTCGGCTTGTAGCTTATTACAAGATTGGAGAACAACAATTCAATTGATTAAGGTAATAGAGCCCTCATTCCCTAGACTTTCAGTCGGGCTTAAGAATCAGCTTCTGCAGATTATGGGAAGAAGCGGAAAGACAGAGGCTATGATGAAGTTGTTCTACAAGATAATTGCATCCAATGGTGATATCAACTTTGATACTTACTCAATTTTGTTGAAGAATCTTTTGTCTGTTGGAAGTTGGAGGAAATATATTGAGGTATTGCAGTGGATGGTGGATGCTAGAGTACGACCTTCAAGCCAAATGTATCTCGATATATCCTATTTTGCACAGAAAAGTGGTGGAACTGAATATGCTTCTATTATAAATGAAAGAATCGAATTATTGAAAGGAAAAGCAAGGGAAGAAGACTCTCGAAGCAAGCTACGTGATACTCACTCCACTTCCATGTTGGTACATAGAACAAGAGCAGAGAACCACAGGCTGCTTGAATCAAGAATGGCTGTTACGCATCCTGTAGTTCCTGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

865

Amino Acids

97.86

Weight (kDa)

9.31

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	158 - 198	9e-09	PPR repeat family
PPR_3	PF13812	180 - 237	6.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	189 - 236	5.7e-11	PPR repeat family
TPR_24	PF23276	202 - 322	9.4e-10	Fungal tetratrico peptide repeats
PPR_long	PF17177	210 - 324	3.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	213 - 271	5.3e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 271	7e-11	PPR repeat family
PPR	PF01535	227 - 257	1.8e-07	PPR repeat
PPR_long	PF17177	315 - 411	4.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	318 - 378	2.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	331 - 371	7.9e-06	PPR repeat family
PPR_2	PF13041	366 - 413	5.2e-15	PPR repeat family
PPR	PF01535	369 - 398	2e-07	PPR repeat
PPR_long	PF17177	386 - 497	8e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	389 - 449	7.2e-18	Pentatricopeptide repeat domain
PPR_2	PF13041	401 - 447	3e-13	PPR repeat family
PPR	PF01535	404 - 432	1.2e-06	PPR repeat
TPR_24	PF23276	409 - 534	5.4e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	433 - 465	1.4e-10	PPR repeat
PPR_2	PF13041	436 - 483	2e-12	PPR repeat family
PPR	PF01535	439 - 469	1.4e-08	PPR repeat
PPR_3	PF13812	495 - 555	4.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	507 - 555	1.2e-15	PPR repeat family
PPR_long	PF17177	525 - 668	1e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	539 - 570	1.1e-08	PPR repeat
PPR_2	PF13041	542 - 587	3.2e-09	PPR repeat family
PPR	PF01535	544 - 572	2.3e-08	PPR repeat
PPR_3	PF13812	566 - 623	6.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	580 - 623	1.4e-11	PPR repeat family
PPR_1	PF12854	608 - 640	9.5e-08	PPR repeat
PPR_2	PF13041	611 - 659	5.7e-13	PPR repeat family
PPR	PF01535	614 - 644	3.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	477, 2429
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	1038
AccI	GTMKAC	2 cut(s)	153, 1740
AccII	CGCG	3 cut(s)	237, 309, 528
AclWI	GGATC	3 cut(s)	718, 1341, 1354
AcoI	YGGCCR	3 cut(s)	18, 1199, 1459
AcsI	RAATTY	5 cut(s)	72, 1404, 1558, 1719, 2034
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	3 cut(s)	1432, 2352, 2520
AfiI	CCNNNNNNNGG	1 cut(s)	1783
AflII	CTTAAG	1 cut(s)	2159
AflIII	ACRYGT	2 cut(s)	235, 480
AhdI	GACNNNNNGTC	1 cut(s)	2150
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	356, 500
Alw21I	GWGCWC	5 cut(s)	333, 414, 463, 1154, 1755
Alw26I	GTCTC	4 cut(s)	151, 204, 277, 1426
Alw44I	GTGCAC	1 cut(s)	1150
AlwI	GGATC	3 cut(s)	718, 1341, 1354
AlwNI	CAGNNNCTG	1 cut(s)	2173
AoxI	GGCC	8 cut(s)	18, 267, 627, 1199, 1290, 1459, 1774, 1984
ApaLI	GTGCAC	1 cut(s)	1150
ApeKI	GCWGC	7 cut(s)	122, 652, 659, 1442, 1493, 1874, 2548
ApoI	RAATTY	5 cut(s)	72, 1404, 1558, 1719, 2034
AseI	ATTAAT	1 cut(s)	1335
Asp700I	GAANNNNTTC	2 cut(s)	365, 2219
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	4 cut(s)	267, 627, 773, 1774
AsuHPI	GGTGA	5 cut(s)	164, 323, 1000, 1480, 2258
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	1154
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	2 cut(s)	20, 1461
BamHI	GGATCC	1 cut(s)	1346
BanII	GRGCYC	2 cut(s)	826, 2133
BarI	GAAGNNNNNNTAC	2 cut(s)	2207, 2239
BbsI	GAAGAC	3 cut(s)	116, 446, 2478
Bbv12I	GWGCWC	5 cut(s)	333, 414, 463, 1154, 1755
BbvI	GCAGC	7 cut(s)	134, 639, 646, 1429, 1505, 1861, 2535
BccI	CCATC	7 cut(s)	294, 333, 380, 1384, 1810, 1995, 2329
BceAI	ACGGC	4 cut(s)	254, 340, 408, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	2 cut(s)	358, 502
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	3 cut(s)	486, 517, 696
BcoDI	GTCTC	4 cut(s)	151, 204, 277, 1426
BfaI	CTAG	8 cut(s)	26, 672, 714, 917, 1266, 1995, 2142, 2346
BfmI	CTRYAG	3 cut(s)	1875, 2174, 2580
BfoI	RGCGCY	1 cut(s)	625
BfrI	CTTAAG	1 cut(s)	2159
BfuAI	ACCTGC	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	358, 502
Bme18I	GGWCC	1 cut(s)	773
BmeRI	GACNNNNNGTC	1 cut(s)	2150
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	267, 627, 773, 1774
BmiI	GGNNCC	1 cut(s)	1348
BmrFI	CCNGG	2 cut(s)	358, 502
BmrI	ACTGGG	2 cut(s)	274, 828
BmuI	ACTGGG	2 cut(s)	274, 828
BpiI	GAAGAC	3 cut(s)	116, 446, 2478
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	2492
BsaHI	GRCGYC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	1783
Bse1I	ACTGG	3 cut(s)	269, 823, 1350
Bse3DI	GCAATG	1 cut(s)	1860
BseBI	CCWGG	2 cut(s)	358, 502
BseCI	ATCGAT	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	1783
BseMI	GCAATG	1 cut(s)	1860
BseMII	CTCAG	2 cut(s)	132, 564
BseNI	ACTGG	3 cut(s)	269, 823, 1350
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	1154
BseXI	GCAGC	7 cut(s)	134, 639, 646, 1429, 1505, 1861, 2535
BseYI	CCCAGC	2 cut(s)	33, 624
BsgI	GTGCAG	1 cut(s)	1039
Bsh1236I	CGCG	3 cut(s)	237, 309, 528
BshFI	GGCC	8 cut(s)	20, 269, 629, 1201, 1292, 1461, 1776, 1986
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	5 cut(s)	333, 414, 463, 1154, 1755
BsiSI	CCGG	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	1783
BsmAI	GTCTC	4 cut(s)	151, 204, 277, 1426
BsmBI	CGTCTC	2 cut(s)	151, 277
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	8 cut(s)	20, 269, 629, 1201, 1292, 1461, 1776, 1986
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	7 cut(s)	333, 414, 463, 826, 1154, 1755, 2133
Bsp143I	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
BspANI	GGCC	8 cut(s)	20, 269, 629, 1201, 1292, 1461, 1776, 1986
BspCNI	CTCAG	2 cut(s)	131, 565
BspDI	ATCGAT	1 cut(s)	337
BspFNI	CGCG	3 cut(s)	237, 309, 528
BspHI	TCATGA	1 cut(s)	2019
BspLI	GGNNCC	1 cut(s)	1348
BspMAI	CTGCAG	2 cut(s)	1879, 2178
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	3 cut(s)	718, 1341, 1354
BspT104I	TTCGAA	1 cut(s)	540
BspTI	CTTAAG	1 cut(s)	2159
BsrBI	CCGCTC	1 cut(s)	1038
BsrDI	GCAATG	1 cut(s)	1860
BsrI	ACTGG	3 cut(s)	269, 823, 1350
BssMI	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	358, 502
Bst4CI	ACNGT	4 cut(s)	416, 458, 933, 1679
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	2159
BstAPI	GCANNNNNTGC	2 cut(s)	418, 1871
BstBAI	YACGTR	1 cut(s)	2492
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	9 cut(s)	329, 463, 498, 526, 563, 657, 1040, 1447, 2486
BstDEI	CTNAG	3 cut(s)	118, 573, 1257
BstFNI	CGCG	3 cut(s)	237, 309, 528
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	7 cut(s)	489, 520, 699, 713, 781, 1247, 1349
BstMAI	GTCTC	4 cut(s)	151, 204, 277, 1426
BstMBI	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
BstMWI	GCNNNNNNNGC	4 cut(s)	418, 502, 1871, 1955
BstNI	CCWGG	2 cut(s)	358, 502
BstNSI	RCATGY	5 cut(s)	484, 652, 708, 1865, 1953
BstSCI	CCNGG	2 cut(s)	356, 500
BstSFI	CTRYAG	3 cut(s)	1875, 2174, 2580
BstSLI	GKGCMC	1 cut(s)	1154
BstUI	CGCG	3 cut(s)	237, 309, 528
BstV1I	GCAGC	7 cut(s)	134, 639, 646, 1429, 1505, 1861, 2535
BstV2I	GAAGAC	3 cut(s)	116, 446, 2478
BstX2I	RGATCY	2 cut(s)	710, 1346
BstYI	RGATCY	2 cut(s)	710, 1346
Bsu15I	ATCGAT	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	8 cut(s)	20, 269, 629, 1201, 1292, 1461, 1776, 1986
BsuTUI	ATCGAT	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	2336
BtsIMutI	CAGTG	6 cut(s)	412, 465, 1328, 1357, 1684, 2336
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	9 cut(s)	329, 463, 498, 526, 563, 657, 1040, 1447, 2486
CaiI	CAGNNNCTG	1 cut(s)	2173
CciI	TCATGA	1 cut(s)	2019
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	4 cut(s)	267, 627, 773, 1774
ClaI	ATCGAT	1 cut(s)	337
CseI	GACGC	2 cut(s)	226, 357
Csp6I	GTAC	3 cut(s)	1431, 2351, 2519
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviQI	GTAC	3 cut(s)	1431, 2351, 2519
DdeI	CTNAG	3 cut(s)	118, 573, 1257
DpnI	GATC	7 cut(s)	488, 519, 698, 712, 780, 1246, 1348
DpnII	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
DraI	TTTAAA	1 cut(s)	738
DrdI	GACNNNNNNGTC	1 cut(s)	269
DriI	GACNNNNNGTC	1 cut(s)	2150
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	3 cut(s)	18, 1199, 1459
Eam1105I	GACNNNNNGTC	1 cut(s)	2150
Eco24I	GRGCYC	2 cut(s)	826, 2133
Eco32I	GATATC	1 cut(s)	2251
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	184
EcoRI	GAATTC	2 cut(s)	72, 1404
EcoRII	CCWGG	2 cut(s)	356, 500
EcoRV	GATATC	1 cut(s)	2251
EcoT22I	ATGCAT	2 cut(s)	706, 1867
EcoT38I	GRGCYC	2 cut(s)	826, 2133
Esp3I	CGTCTC	2 cut(s)	151, 277
FauI	CCCGC	1 cut(s)	1031
FauNDI	CATATG	1 cut(s)	1132
FbaI	TGATCA	3 cut(s)	486, 517, 696
FblI	GTMKAC	2 cut(s)	153, 1740
FriOI	GRGCYC	2 cut(s)	826, 2133
FspBI	CTAG	8 cut(s)	26, 672, 714, 917, 1266, 1995, 2142, 2346
GlaI	GCGC	1 cut(s)	623
GsaI	CCCAGC	2 cut(s)	37, 628
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	8 cut(s)	20, 269, 629, 1201, 1292, 1461, 1776, 1986
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	2 cut(s)	226, 357
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	2 cut(s)	154, 681
HindII	GTYRAC	2 cut(s)	154, 681
HindIII	AAGCTT	3 cut(s)	732, 837, 923
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	5 cut(s)	164, 323, 1000, 1480, 2258
Hpy166II	GTNNAC	4 cut(s)	154, 681, 1152, 1741
Hpy188I	TCNGA	5 cut(s)	277, 347, 491, 1624, 1962
Hpy8I	GTNNAC	4 cut(s)	154, 681, 1152, 1741
Hpy99I	CGWCG	5 cut(s)	155, 242, 281, 284, 309
HpyAV	CCTTC	9 cut(s)	62, 253, 856, 1079, 1255, 1282, 1459, 1765, 2367
HpyCH4III	ACNGT	4 cut(s)	416, 458, 933, 1679
HpyCH4IV	ACGT	3 cut(s)	144, 279, 2491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	418, 502, 1871, 1955
HpyF3I	CTNAG	3 cut(s)	118, 573, 1257
HpySE526I	ACGT	3 cut(s)	144, 279, 2491
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	1 cut(s)	622
Ksp22I	TGATCA	3 cut(s)	486, 517, 696
Kzo9I	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
LmnI	GCTCC	6 cut(s)	247, 306, 409, 977, 1393, 1548
Lsp1109I	GCAGC	7 cut(s)	134, 639, 646, 1429, 1505, 1861, 2535
MaeI	CTAG	8 cut(s)	26, 672, 714, 917, 1266, 1995, 2142, 2346
MaeII	ACGT	3 cut(s)	144, 279, 2491
MaeIII	GTNAC	7 cut(s)	311, 784, 1000, 1630, 1840, 1857, 2569
MalI	GATC	7 cut(s)	488, 519, 698, 712, 780, 1246, 1348
MbiI	CCGCTC	1 cut(s)	1038
MboI	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
MfeI	CAATTG	2 cut(s)	1524, 2111
MflI	RGATCY	2 cut(s)	710, 1346
MhlI	GDGCHC	7 cut(s)	333, 414, 463, 826, 1154, 1755, 2133
MlsI	TGGCCA	2 cut(s)	20, 1461
MluI	ACGCGT	1 cut(s)	235
MluNI	TGGCCA	2 cut(s)	20, 1461
MlyI	GAGTC	4 cut(s)	110, 584, 781, 2468
MmeI	TCCRAC	6 cut(s)	300, 325, 751, 1957, 2278, 2285
Mox20I	TGGCCA	2 cut(s)	20, 1461
Mph1103I	ATGCAT	2 cut(s)	706, 1867
MroXI	GAANNNNTTC	2 cut(s)	365, 2219
MscI	TGGCCA	2 cut(s)	20, 1461
MseI	TTAA	8 cut(s)	737, 1068, 1173, 1335, 1374, 1974, 2118, 2160
MslI	CAYNNNNRTG	1 cut(s)	2510
Msp20I	TGGCCA	2 cut(s)	20, 1461
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	2159
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	358, 502
MunI	CAATTG	2 cut(s)	1524, 2111
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	358, 502
MvnI	CGCG	3 cut(s)	237, 309, 528
MwoI	GCNNNNNNNGC	4 cut(s)	418, 502, 1871, 1955
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
NlaIV	GGNNCC	1 cut(s)	1348
NmuCI	GTSAC	2 cut(s)	311, 784
NsiI	ATGCAT	2 cut(s)	706, 1867
NspI	RCATGY	5 cut(s)	484, 652, 708, 1865, 1953
NspV	TTCGAA	1 cut(s)	540
PagI	TCATGA	1 cut(s)	2019
PciI	ACATGT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	2 cut(s)	365, 2219
PfeI	GAWTC	6 cut(s)	1625, 1793, 2164, 2284, 2439, 2555
PflFI	GACNNNGTC	1 cut(s)	281
PleI	GAGTC	4 cut(s)	110, 583, 781, 2468
PpsI	GAGTC	4 cut(s)	110, 583, 781, 2468
Ppu21I	YACGTR	1 cut(s)	2492
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	1335
PsiI	TTATAA	2 cut(s)	477, 2429
Psp6I	CCWGG	2 cut(s)	356, 500
PspFI	CCCAGC	2 cut(s)	33, 624
PspGI	CCWGG	2 cut(s)	356, 500
PspN4I	GGNNCC	1 cut(s)	1348
PspPI	GGNCC	4 cut(s)	267, 627, 773, 1774
PstI	CTGCAG	2 cut(s)	1879, 2178
PstNI	CAGNNNCTG	1 cut(s)	2173
PsuI	RGATCY	2 cut(s)	710, 1346
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	3 cut(s)	1432, 2352, 2520
RsaNI	GTAC	3 cut(s)	1431, 2351, 2519
RseI	CAYNNNNRTG	1 cut(s)	2510
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	8 cut(s)	737, 1068, 1173, 1335, 1374, 1974, 2118, 2160
Sau3AI	GATC	7 cut(s)	486, 517, 696, 710, 778, 1244, 1346
Sau96I	GGNCC	4 cut(s)	267, 627, 773, 1774
SchI	GAGTC	4 cut(s)	110, 584, 781, 2468
ScrFI	CCNGG	2 cut(s)	358, 502
SduI	GDGCHC	7 cut(s)	333, 414, 463, 826, 1154, 1755, 2133
SfcI	CTRYAG	3 cut(s)	1875, 2174, 2580
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	2510
SmlI	CTYRAG	2 cut(s)	446, 2159
SmoI	CTYRAG	2 cut(s)	446, 2159
SspI	AATATT	3 cut(s)	796, 830, 901
SspMI	CTAG	8 cut(s)	26, 672, 714, 917, 1266, 1995, 2142, 2346
StyD4I	CCNGG	2 cut(s)	356, 500
TaaI	ACNGT	4 cut(s)	416, 458, 933, 1679
TaiI	ACGT	3 cut(s)	147, 282, 2494
TaqI	TCGA	8 cut(s)	153, 240, 337, 540, 607, 2376, 2442, 2479
TaqII	GACCGA	2 cut(s)	128, 666
TauI	GCSGC	4 cut(s)	168, 198, 531, 1163
TfiI	GAWTC	6 cut(s)	1625, 1793, 2164, 2284, 2439, 2555
Tru1I	TTAA	8 cut(s)	737, 1068, 1173, 1335, 1374, 1974, 2118, 2160
Tru9I	TTAA	8 cut(s)	737, 1068, 1173, 1335, 1374, 1974, 2118, 2160
TscAI	CASTG	6 cut(s)	419, 472, 1335, 1357, 1684, 2336
TseFI	GTSAC	2 cut(s)	311, 784
TseI	GCWGC	7 cut(s)	122, 652, 659, 1442, 1493, 1874, 2548
Tsp45I	GTSAC	2 cut(s)	311, 784
TspGWI	ACGGA	5 cut(s)	139, 260, 293, 866, 1799
TspRI	CASTG	6 cut(s)	419, 472, 1335, 1357, 1684, 2336
Tth111I	GACNNNGTC	1 cut(s)	281
Vha464I	CTTAAG	1 cut(s)	2159
VneI	GTGCAC	1 cut(s)	1150
VpaK11BI	GGWCC	1 cut(s)	773
VspI	ATTAAT	1 cut(s)	1335
XapI	RAATTY	5 cut(s)	72, 1404, 1558, 1719, 2034
XbaI	TCTAGA	1 cut(s)	1994
XceI	RCATGY	5 cut(s)	484, 652, 708, 1865, 1953
XcmI	CCANNNNNNNNNTGG	2 cut(s)	637, 2512
XmiI	GTMKAC	2 cut(s)	153, 1740
XmnI	GAANNNNTTC	2 cut(s)	365, 2219
XspI	CTAG	8 cut(s)	26, 672, 714, 917, 1266, 1995, 2142, 2346
ZraI	GACGTC	1 cut(s)	280
Zsp2I	ATGCAT	2 cut(s)	706, 1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.