AT2G41720

Pentacotripeptide-repeat region of PRORP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001672
Physical Location & Seq
Reverse (-)
17403603 .. 17407325
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41720.1

Sequence Viewer

Length: 2469 bp
ATGGCTACCGTTACCAATTTCAAGCTCGTCACTCCGCCGGAATCTTCCCGCGCCGATAAGCCAGGAGCTACGAAGGCCTCCGACGCATTCCAGGAGAAGAAATCTGTGTCTGTGAACTACGACCGTGGTGAGCATGAGGTCTCGGTCAACATCGGCGGGCTCAGGAAAGCTGATATTCCGAGACGTTACCGAATTCGGGTTGAGAACGACCGGTTTCAGAAGGATTGGAGTGTATCGGAGGTTGTGGACCGGCTTATGGCTCTCAATCGTTGGGAAGAAGTTGATGGCGTTCTTAATTCCTGGGTCGGCCGGTTTGCTAGGAAGAATTTCCCGGTTCTTATCAGGGAGCTTAGTAGAAGAGGGTGTATTGAGCTTTGTGTGAATGTTTTCAAGTGGATGAAGATTCAGAAGAACTACTGTGCAAGGAATGATATATACAATATGATGATTAGGCTTCATGCTAGGCATAATTGGGTTGATCAGGCTCGTGGTCTCTTCTTTGAAATGCAGAAATGGAGCTGCAAACCGGATGCTGAGACGTACGATGCTCTTATCAATGCCCATGGTCGAGCTGGTCAATGGCGCTGGGCTATGAATCTTATGGATGACATGTTACGTGCTGCTATTGCTCCTAGTCGTTCAACCTACAATAACCTGATCAATGCTTGTGGTTCTAGTGGAAACTGGAGAGAGGCTCTGGAAGTATGCAAGAAAATGACAGATAACGGAGTTGGACCGGATTTGGTCACTCATAACATTGTGTTGTCAGCATACAAGAGTGGTCGTCAGTATTCAAAGGCGCTATCTTATTTTGAGCTCATGAAGGGAGCTAAAGTTCGTCCCGATACTACAACTTTCAATATCATTATATATTGTCTGTCAAAGCTCGGTCAAAGTAGCCAAGCCCTTGATCTTTTCAATTCCATGAGGGAGAAGAGAGCTGAGTGCAGACCTGATGTTGTGACATTTACGAGCATCATGCATTTATACTCTGTCAAGGGAGAGATAGAAAACTGCAGAGCCGTGTTCGAAGCAATGGTTGCAGAAGGTCTAAAGCCTAATATTGTTTCCTATAATGCCTTAATGGGTGCCTATGCTGTTCATGGAATGAGTGGAACTGCTCTCTCAGTGTTAGGAGATATCAAGCAGAATGGTATTATCCCAGATGTGGTCTCTTATACATGCTTGCTCAATTCTTATGGAAGATCACGTCAACCTGGGAAGGCAAAGGAGGTATTCCTCATGATGAGGAAGGAAAGGAGAAAGCCAAATGTTGTTACTTACAATGCATTGATTGATGCTTATGGGTCTAATGGGTTTCTAGCTGAAGCTGTGGAAATCTTTCGGCAGATGGAACAAGATGGCATTAAGCCAAATGTTGTTTCAGTATGCACTCTTTTGGCTGCTTGTAGTAGGTCTAAAAAAAAGGTGAATGTTGATACTGTACTTTCCGCAGCACAGTCGAGAGGCATTAATCTCAATACGGCAGCCTATAACTCAGCCATTGGAAGCTATATAAATGCTGCAGAACTTGAGAAGGCCATTGCATTGTATCAGAGTATGAGAAAAAAGAAAGTCAAAGCTGATTCTGTTACTTTCACTATCCTTATAAGCGGTTCATGTAGGATGTCAAAATACCCTGAAGCAATTAGTTACTTGAAGGAGATGGAAGATCTCAGTATTCCATTGACAAAGGAGGTGTACTCTTCGGTTCTATGTGCTTACAGCAAACAGGGTCAAGTTACAGAAGCAGAATCCATATTCAACCAGATGAAAATGGCTGGGTGCGAACCTGATGTGATTGCATACACTTCAATGCTCCATGCTTACAATGCTTCAGAAAAGTGGGGAAAGGCTTGTGAACTCTTCCTGGAAATGGAGGCAAATGGAATAGAGCCAGATTCGATTGCTTGTTCAGCTTTGATGAGAGCTTTCAACAAGGGAGGTCAACCGTCAAATGTCTTTGTCCTGATGGATTTAATGCGGGAAAAAGAAATCCCCTTCACTGGTGCGGTCTTCTTTGAGATATTTTCGGCTTGTAACACCTTGCAGGAATGGAAAAGAGCAATAGACCTCATCCAAATGATGGATCCGTACCTGCCATCGCTTTCTATCGGGTTAACTAATCAGATGCTGCATCTTTTCGGGAAGAGTGGTAAAGTTGAAGCAATGATGAAGCTGTTCTATAAGATTATTGCCTCTGGTGTTGGAATCAACCTCAAGACTTATGCAATACTGTTGGAACATCTTTTAGCTGTTGGAAACTGGAGAAAATACATTGAGGTTTTAGAATGGATGAGTGGTGCTGGTATTCAACCCTCGAACCAAATGTATCGTGACATAATCTCCTTTGGTGAAAGAAGTGCAGGGATCGAGTTCGAGCCTCTAATACGCCAAAAATTGGAATCACTGAGAAACAAAGGAGAAGGTCTGATTCCAACTTTTAGACACGAAGGCACATTGTTGTAA

Protein Analysis

822

Amino Acids

92.41

Weight (kDa)

9.01

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 145 - 187 5.4e-10 PPR repeat family
PPR_3 PF13812 166 - 224 1.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 173 - 204 6.2e-06 PPR repeat
PPR_2 PF13041 178 - 223 2.1e-09 PPR repeat family
TPR_24 PF23276 190 - 309 9.7e-09 Fungal tetratrico peptide repeats
PPR_long PF17177 198 - 311 3.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 200 - 258 2.9e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 211 - 258 1.3e-10 PPR repeat family
PPR PF01535 214 - 244 1.2e-07 PPR repeat
PPR_3 PF13812 235 - 291 5.8e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 246 - 295 3.5e-08 PPR repeat family
PPR_long PF17177 265 - 425 2.1e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 313 - 365 2.9e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 318 - 366 4.2e-10 PPR repeat family
PPR_2 PF13041 353 - 399 1.8e-10 PPR repeat family
PPR_3 PF13812 376 - 438 7.9e-14 Pentatricopeptide repeat domain
PPR_2 PF13041 388 - 435 6.4e-13 PPR repeat family
TPR_24 PF23276 397 - 521 5.6e-13 Fungal tetratrico peptide repeats
PPR_1 PF12854 422 - 452 3.9e-10 PPR repeat
PPR_2 PF13041 423 - 471 1.9e-13 PPR repeat family
PPR PF01535 426 - 456 6e-09 PPR repeat
PPR_2 PF13041 494 - 542 1.7e-12 PPR repeat family
PPR_long PF17177 517 - 663 6.6e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 553 - 610 6.2e-06 Pentatricopeptide repeat domain
PPR PF01535 567 - 596 3.2e-06 PPR repeat
PPR_2 PF13041 567 - 610 2.3e-11 PPR repeat family
PPR_2 PF13041 598 - 646 4e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1610
Acc36I ACCTGC 1 cut(s) 2106
AccB1I GGYRCC 1 cut(s) 1088
AccB7I CCANNNNNTGG 2 cut(s) 2086, 2401
AccII CGCG 1 cut(s) 51
AciI CCGC 7 cut(s) 35, 49, 156, 1452, 1614, 1984, 2012
AclWI GGATC 3 cut(s) 2084, 2097, 2378
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 2 cut(s) 192, 325
AcuI CTGAAG 3 cut(s) 1347, 1662, 1821
AfaI GTAC 4 cut(s) 542, 1446, 1703, 2096
AfiI CCNNNNNNNGG 7 cut(s) 196, 256, 1168, 1876, 2006, 2086, 2401
AflIII ACRYGT 1 cut(s) 609
AgeI ACCGGT 1 cut(s) 210
AjiI CACGTC 1 cut(s) 1211
AjnI CCWGG 5 cut(s) 61, 90, 299, 1216, 1869
AjuI GAANNNNNNNTTGG 2 cut(s) 1366, 1398
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 5 cut(s) 145, 175, 497, 530, 1177
AlwI GGATC 3 cut(s) 2084, 2097, 2378
AlwNI CAGNNNCTG 1 cut(s) 2134
AoxI GGCC 3 cut(s) 75, 307, 1539
ApeKI GCWGC 7 cut(s) 519, 620, 1403, 1454, 1487, 1523, 2134
ApoI RAATTY 2 cut(s) 192, 325
AseI ATTAAT 1 cut(s) 1473
AsiGI ACCGGT 1 cut(s) 210
Asp700I GAANNNNTTC 4 cut(s) 326, 386, 1341, 2180
AspLEI GCGC 3 cut(s) 53, 585, 802
AspS9I GGNCC 2 cut(s) 247, 734
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 140, 1441, 2366
AsuII TTCGAA 1 cut(s) 1029
AvaII GGWCC 2 cut(s) 247, 734
BamHI GGATCC 1 cut(s) 2089
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 2 cut(s) 162, 819
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 2008
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 7 cut(s) 506, 607, 1390, 1466, 1499, 1510, 2121
BccI CCATC 7 cut(s) 278, 1345, 1355, 1660, 1966, 2080, 2110
BceAI ACGGC 2 cut(s) 1007, 1500
BcgI CGANNNNNNTGC 4 cut(s) 961, 995, 1443, 1477
BciT130I CCWGG 5 cut(s) 63, 92, 301, 1218, 1871
BclI TGATCA 2 cut(s) 478, 657
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 5 cut(s) 145, 175, 497, 530, 1177
BfaI CTAG 5 cut(s) 318, 462, 633, 675, 1322
BfmI CTRYAG 2 cut(s) 1015, 1524
BfoI RGCGCY 2 cut(s) 586, 803
BfuAI ACCTGC 1 cut(s) 2106
BglII AGATCT 1 cut(s) 1672
BisI GCNGC 7 cut(s) 520, 621, 1404, 1455, 1488, 1524, 2135
BlsI GCNGC 7 cut(s) 521, 622, 1405, 1456, 1489, 1525, 2136
Bme1390I CCNGG 6 cut(s) 63, 92, 301, 332, 1218, 1871
Bme18I GGWCC 2 cut(s) 247, 734
BmgBI CACGTC 1 cut(s) 1211
BmgT120I GGNCC 2 cut(s) 247, 734
BmiI GGNNCC 2 cut(s) 1090, 2091
BmrFI CCNGG 6 cut(s) 63, 92, 301, 332, 1218, 1871
BmsI GCATC 6 cut(s) 520, 535, 984, 1288, 2121, 2146
BpiI GAAGAC 1 cut(s) 2008
BplI GAGNNNNNCTC 4 cut(s) 679, 711, 1688, 1720
BpmI CTGGAG 2 cut(s) 706, 2287
Bpu10I CCTNAGC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 1553, 2204
BpuMI CCSGG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 617
BsaI GGTCTC 3 cut(s) 145, 497, 1177
BsaJI CCNNGG 4 cut(s) 124, 300, 562, 1217
BsaWI WCCGGW 3 cut(s) 210, 526, 736
BsaXI ACNNNNNCTCC 4 cut(s) 819, 849, 2330, 2360
Bsc4I CCNNNNNNNGG 7 cut(s) 196, 256, 1168, 1876, 2006, 2086, 2401
Bse118I RCCGGY 3 cut(s) 210, 249, 309
Bse1I ACTGG 3 cut(s) 689, 2011, 2270
Bse3DI GCAATG 3 cut(s) 1041, 1542, 2175
BseBI CCWGG 5 cut(s) 63, 92, 301, 1218, 1871
BseDI CCNNGG 4 cut(s) 124, 300, 562, 1217
BseGI GGATG 6 cut(s) 402, 535, 610, 1632, 2076, 2301
BseLI CCNNNNNNNGG 7 cut(s) 196, 256, 1168, 1876, 2006, 2086, 2401
BseMI GCAATG 3 cut(s) 1041, 1542, 2175
BseMII CTCAG 7 cut(s) 175, 525, 933, 1140, 1512, 1690, 2402
BseNI ACTGG 3 cut(s) 689, 2011, 2270
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 7 cut(s) 506, 607, 1390, 1466, 1499, 1510, 2121
BseYI CCCAGC 2 cut(s) 585, 1781
BsgI GTGCAG 2 cut(s) 967, 2385
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 3 cut(s) 124, 211, 310
BshFI GGCC 3 cut(s) 77, 309, 1541
BshNI GGYRCC 1 cut(s) 1088
BshTI ACCGGT 1 cut(s) 210
BsiEI CGRYCG 3 cut(s) 124, 211, 310
BsiHKAI GWGCWC 1 cut(s) 819
BsiSI CCGG 7 cut(s) 38, 211, 250, 310, 332, 527, 737
BsiWI CGTACG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 7 cut(s) 196, 256, 1168, 1876, 2006, 2086, 2401
BsmAI GTCTC 5 cut(s) 145, 175, 497, 530, 1177
BsmBI CGTCTC 2 cut(s) 175, 530
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 3 cut(s) 77, 309, 1541
Bso31I GGTCTC 3 cut(s) 145, 497, 1177
Bsp119I TTCGAA 1 cut(s) 1029
Bsp1286I GDGCHC 2 cut(s) 162, 819
Bsp143I GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 7 cut(s) 35, 49, 156, 1452, 1614, 1984, 2012
BspANI GGCC 3 cut(s) 77, 309, 1541
BspCNI CTCAG 7 cut(s) 174, 526, 934, 1139, 1511, 1689, 2403
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 2 cut(s) 819, 1242
BspLI GGNNCC 2 cut(s) 1090, 2091
BspMAI CTGCAG 2 cut(s) 1019, 1528
BspMI ACCTGC 1 cut(s) 2106
BspPI GGATC 3 cut(s) 2084, 2097, 2378
BspT104I TTCGAA 1 cut(s) 1029
BspT107I GGYRCC 1 cut(s) 1088
BspTNI GGTCTC 3 cut(s) 145, 497, 1177
BsrDI GCAATG 3 cut(s) 1041, 1542, 2175
BsrFI RCCGGY 3 cut(s) 210, 249, 309
BsrI ACTGG 3 cut(s) 689, 2011, 2270
BssAI RCCGGY 3 cut(s) 210, 249, 309
BssECI CCNNGG 4 cut(s) 124, 300, 562, 1217
BssMI GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 1 cut(s) 562
Bst2BI CACGAG 1 cut(s) 486
Bst2UI CCWGG 5 cut(s) 63, 92, 301, 1218, 1871
Bst4CI ACNGT 7 cut(s) 10, 125, 419, 1444, 1461, 1953, 2238
Bst6I CTCTTC 6 cut(s) 352, 500, 929, 1711, 1871, 2144
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstBAI YACGTR 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 1029
BstC8I GCNNGC 2 cut(s) 158, 1187
BstDEI CTNAG 8 cut(s) 161, 350, 534, 942, 1126, 1498, 1676, 2411
BstDSI CCRYGG 2 cut(s) 124, 562
BstF5I GGATG 6 cut(s) 402, 535, 610, 1632, 2076, 2301
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 586, 803
BstHHI GCGC 3 cut(s) 53, 585, 802
BstKTI GATC 7 cut(s) 481, 660, 913, 1208, 1675, 2092, 2373
BstMAI GTCTC 5 cut(s) 145, 175, 497, 530, 1177
BstMBI GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
BstMCI CGRYCG 3 cut(s) 124, 211, 310
BstMWI GCNNNNNNNGC 6 cut(s) 74, 83, 626, 1040, 1832, 1916
BstNI CCWGG 5 cut(s) 63, 92, 301, 1218, 1871
BstNSI RCATGY 2 cut(s) 613, 1185
BstSCI CCNGG 6 cut(s) 61, 90, 299, 330, 1216, 1869
BstSFI CTRYAG 2 cut(s) 1015, 1524
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 7 cut(s) 506, 607, 1390, 1466, 1499, 1510, 2121
BstV2I GAAGAC 1 cut(s) 2008
BstX2I RGATCY 2 cut(s) 1672, 2089
BstYI RGATCY 2 cut(s) 1672, 2089
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 3 cut(s) 77, 309, 1541
BtgI CCRYGG 2 cut(s) 124, 562
BtgZI GCGATG 1 cut(s) 2088
BtrI CACGTC 1 cut(s) 1211
BtsCI GGATG 6 cut(s) 402, 535, 610, 1632, 2076, 2301
BtsIMutI CAGTG 3 cut(s) 1134, 2004, 2408
BveI ACCTGC 1 cut(s) 2106
Cac8I GCNNGC 2 cut(s) 158, 1187
CaiI CAGNNNCTG 1 cut(s) 2134
CciI TCATGA 2 cut(s) 819, 1242
CfoI GCGC 3 cut(s) 53, 585, 802
Cfr10I RCCGGY 3 cut(s) 210, 249, 309
Cfr13I GGNCC 2 cut(s) 247, 734
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 541, 1445, 1702, 2095
CspAI ACCGGT 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviQI GTAC 4 cut(s) 541, 1445, 1702, 2095
DdeI CTNAG 8 cut(s) 161, 350, 534, 942, 1126, 1498, 1676, 2411
DpnI GATC 7 cut(s) 480, 659, 912, 1207, 1674, 2091, 2372
DpnII GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 6 cut(s) 352, 500, 929, 1711, 1871, 2144
EarI CTCTTC 6 cut(s) 352, 500, 929, 1711, 1871, 2144
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 817
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 162, 819
Eco31I GGTCTC 3 cut(s) 145, 497, 1177
Eco32I GATATC 1 cut(s) 1141
Eco47I GGWCC 2 cut(s) 247, 734
Eco52I CGGCCG 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 3 cut(s) 1347, 1662, 1821
EcoICRI GAGCTC 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 5 cut(s) 61, 90, 299, 1216, 1869
EcoRV GATATC 1 cut(s) 1141
EcoT14I CCWWGG 1 cut(s) 562
EcoT22I ATGCAT 2 cut(s) 984, 1291
EcoT38I GRGCYC 2 cut(s) 162, 819
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 2 cut(s) 175, 530
FaqI GGGAC 1 cut(s) 825
FauI CCCGC 3 cut(s) 56, 149, 1977
FbaI TGATCA 2 cut(s) 478, 657
Fnu4HI GCNGC 7 cut(s) 520, 621, 1404, 1455, 1488, 1524, 2135
FokI GGATG 6 cut(s) 409, 542, 617, 1639, 2063, 2308
FriOI GRGCYC 2 cut(s) 162, 819
Fsp4HI GCNGC 7 cut(s) 520, 621, 1404, 1455, 1488, 1524, 2135
FspBI CTAG 5 cut(s) 318, 462, 633, 675, 1322
GlaI GCGC 3 cut(s) 52, 584, 801
GluI GCNGC 7 cut(s) 520, 621, 1404, 1455, 1488, 1524, 2135
GsaI CCCAGC 2 cut(s) 589, 1785
GsuI CTGGAG 2 cut(s) 706, 2287
HaeII RGCGCY 2 cut(s) 586, 803
HaeIII GGCC 3 cut(s) 77, 309, 1541
HapII CCGG 7 cut(s) 38, 211, 250, 310, 332, 527, 737
HgaI GACGC 1 cut(s) 92
HhaI GCGC 3 cut(s) 53, 585, 802
Hin6I GCGC 3 cut(s) 51, 583, 800
HinP1I GCGC 3 cut(s) 51, 583, 800
HincII GTYRAC 4 cut(s) 148, 1214, 1949, 2121
HindII GTYRAC 4 cut(s) 148, 1214, 1949, 2121
HinfI GANTC 9 cut(s) 41, 403, 595, 1586, 1754, 1901, 2211, 2405, 2434
HpaI GTTAAC 1 cut(s) 2121
HpaII CCGG 7 cut(s) 38, 211, 250, 310, 332, 527, 737
HphI GGTGA 3 cut(s) 140, 1441, 2366
Hpy166II GTNNAC 8 cut(s) 115, 148, 247, 1214, 1702, 1862, 1949, 2121
Hpy188I TCNGA 9 cut(s) 82, 180, 219, 238, 408, 1557, 1840, 2130, 2433
Hpy8I GTNNAC 8 cut(s) 115, 148, 247, 1214, 1702, 1862, 1949, 2121
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 7 cut(s) 10, 125, 419, 1444, 1461, 1953, 2238
HpyCH4IV ACGT 4 cut(s) 184, 539, 616, 1210
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 83, 626, 1040, 1832, 1916
HpyF3I CTNAG 8 cut(s) 161, 350, 534, 942, 1126, 1498, 1676, 2411
HpySE526I ACGT 4 cut(s) 184, 539, 616, 1210
HspAI GCGC 3 cut(s) 51, 583, 800
Ksp22I TGATCA 2 cut(s) 478, 657
KspAI GTTAAC 1 cut(s) 2121
Kzo9I GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
LmnI GCTCC 6 cut(s) 65, 346, 516, 634, 827, 1824
Lsp1109I GCAGC 7 cut(s) 506, 607, 1390, 1466, 1499, 1510, 2121
LweI GCATC 6 cut(s) 520, 535, 984, 1288, 2121, 2146
MaeI CTAG 5 cut(s) 318, 462, 633, 675, 1322
MaeII ACGT 4 cut(s) 184, 539, 616, 1210
MalI GATC 7 cut(s) 480, 659, 912, 1207, 1674, 2091, 2372
MboI GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
MflI RGATCY 2 cut(s) 1672, 2089
MhlI GDGCHC 2 cut(s) 162, 819
MluCI AATT 9 cut(s) 16, 192, 295, 325, 469, 919, 1192, 1647, 2399
MmeI TCCRAC 6 cut(s) 105, 712, 2188, 2220, 2239, 2462
Mph1103I ATGCAT 2 cut(s) 984, 1291
MroXI GAANNNNTTC 4 cut(s) 326, 386, 1341, 2180
MseI TTAA 6 cut(s) 294, 1082, 1368, 1473, 1979, 2120
MslI CAYNNNNRTG 2 cut(s) 1814, 2081
MspI CCGG 7 cut(s) 38, 211, 250, 310, 332, 527, 737
MspR9I CCNGG 6 cut(s) 63, 92, 301, 332, 1218, 1871
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 5 cut(s) 63, 92, 301, 1218, 1871
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 6 cut(s) 74, 83, 626, 1040, 1832, 1916
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 1 cut(s) 562
NdeII GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
NlaIV GGNNCC 2 cut(s) 1090, 2091
NmuCI GTSAC 4 cut(s) 28, 745, 961, 2336
NsiI ATGCAT 2 cut(s) 984, 1291
NspI RCATGY 2 cut(s) 613, 1185
NspV TTCGAA 1 cut(s) 1029
PagI TCATGA 2 cut(s) 819, 1242
PceI AGGCCT 1 cut(s) 77
PciI ACATGT 1 cut(s) 609
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 4 cut(s) 326, 386, 1341, 2180
PfeI GAWTC 9 cut(s) 41, 403, 595, 1586, 1754, 1901, 2211, 2405, 2434
Pfl23II CGTACG 1 cut(s) 540
PflMI CCANNNNNTGG 2 cut(s) 2086, 2401
PfoI TCCNGGA 2 cut(s) 90, 1869
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 7 cut(s) 521, 622, 1405, 1456, 1489, 1525, 2136
Ppu21I YACGTR 1 cut(s) 617
PscI ACATGT 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 1473
PsiI TTATAA 1 cut(s) 1610
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 5 cut(s) 61, 90, 299, 1216, 1869
PspFI CCCAGC 2 cut(s) 585, 1781
PspGI CCWGG 5 cut(s) 61, 90, 299, 1216, 1869
PspLI CGTACG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 1090, 2091
PspPI GGNCC 2 cut(s) 247, 734
PstI CTGCAG 2 cut(s) 1019, 1528
PstNI CAGNNNCTG 1 cut(s) 2134
PsuI RGATCY 2 cut(s) 1672, 2089
RsaI GTAC 4 cut(s) 542, 1446, 1703, 2096
RsaNI GTAC 4 cut(s) 541, 1445, 1702, 2095
RseI CAYNNNNRTG 2 cut(s) 1814, 2081
SacI GAGCTC 1 cut(s) 819
SaqAI TTAA 6 cut(s) 294, 1082, 1368, 1473, 1979, 2120
SatI GCNGC 7 cut(s) 520, 621, 1404, 1455, 1488, 1524, 2135
Sau3AI GATC 7 cut(s) 478, 657, 910, 1205, 1672, 2089, 2370
Sau96I GGNCC 2 cut(s) 247, 734
ScrFI CCNGG 6 cut(s) 63, 92, 301, 332, 1218, 1871
SduI GDGCHC 2 cut(s) 162, 819
SfaNI GCATC 6 cut(s) 520, 535, 984, 1288, 2121, 2146
SfcI CTRYAG 2 cut(s) 1015, 1524
SfuI TTCGAA 1 cut(s) 1029
SinI GGWCC 2 cut(s) 247, 734
SmiMI CAYNNNNRTG 2 cut(s) 1814, 2081
SmlI CTYRAG 2 cut(s) 1532, 2219
SmoI CTYRAG 2 cut(s) 1532, 2219
Sse9I AATT 9 cut(s) 16, 192, 295, 325, 469, 919, 1192, 1647, 2399
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 7 cut(s) 35, 49, 156, 1452, 1614, 1984, 2012
SspI AATATT 1 cut(s) 1063
SspMI CTAG 5 cut(s) 318, 462, 633, 675, 1322
SstI GAGCTC 1 cut(s) 819
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 6 cut(s) 61, 90, 299, 330, 1216, 1869
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 7 cut(s) 10, 125, 419, 1444, 1461, 1953, 2238
TaiI ACGT 4 cut(s) 187, 542, 619, 1213
TaqI TCGA 7 cut(s) 568, 1029, 1463, 1904, 2321, 2373, 2379
TaqII GACCGA 2 cut(s) 133, 878
TasI AATT 9 cut(s) 16, 192, 295, 325, 469, 919, 1192, 1647, 2399
TatI WGTACW 2 cut(s) 1444, 1701
TfiI GAWTC 9 cut(s) 41, 403, 595, 1586, 1754, 1901, 2211, 2405, 2434
Tru1I TTAA 6 cut(s) 294, 1082, 1368, 1473, 1979, 2120
Tru9I TTAA 6 cut(s) 294, 1082, 1368, 1473, 1979, 2120
TscAI CASTG 3 cut(s) 1134, 2011, 2415
TseFI GTSAC 4 cut(s) 28, 745, 961, 2336
TseI GCWGC 7 cut(s) 519, 620, 1403, 1454, 1487, 1523, 2134
Tsp45I GTSAC 4 cut(s) 28, 745, 961, 2336
TspDTI ATGAA 8 cut(s) 413, 446, 608, 836, 1091, 1608, 1787, 2189
TspGWI ACGGA 2 cut(s) 741, 2082
TspRI CASTG 3 cut(s) 1134, 2011, 2415
Van91I CCANNNNNTGG 2 cut(s) 2086, 2401
VpaK11BI GGWCC 2 cut(s) 247, 734
VspI ATTAAT 1 cut(s) 1473
XapI RAATTY 2 cut(s) 192, 325
XceI RCATGY 2 cut(s) 613, 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmnI GAANNNNTTC 4 cut(s) 326, 386, 1341, 2180
XspI CTAG 5 cut(s) 318, 462, 633, 675, 1322
Zsp2I ATGCAT 2 cut(s) 984, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.