RRP12-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G23540 |
| fragaria_vesca | FvH4_6g24030 FvH4_6g24030 FvH4_6g24030 FvH4_6g24030 |
| malus_domestica | MD12G1075000.v1.1 |
| prunus_persica | Prupe.7G058600_v2.0.a1 |
| pyrus_communis | pycom12g06460 pycom14g06290 |
| rosa_chinensis | RchiOBHm_Chr3g0482611 |
| rosa_laevigata | RLG00000023336 |
| rosa_multiflora | Rmu_co8265035.1_g000001 Rmu_sc0015494.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00399070 |
| rosa_rugosa | Rorug03G0197600 |
| rosa_samantha | Rh3AG248700 Rh3BG284200 Rh3CG281700 Rh3DG277900 |
| rosa_wichuraiana | Rw3G022460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 190 |
| Acc16I | TGCGCA | 1 cut(s) | 143 |
| Acc36I | ACCTGC | 3 cut(s) | 190, 1028, 1762 |
| Acc65I | GGTACC | 1 cut(s) | 1495 |
| AccB1I | GGYRCC | 2 cut(s) | 301, 1495 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1111 |
| AccI | GTMKAC | 1 cut(s) | 1845 |
| AccII | CGCG | 2 cut(s) | 131, 233 |
| AccIII | TCCGGA | 1 cut(s) | 519 |
| AclI | AACGTT | 1 cut(s) | 549 |
| AclWI | GGATC | 7 cut(s) | 235, 453, 466, 1122, 2244, 2603, 3190 |
| AcoI | YGGCCR | 2 cut(s) | 282, 324 |
| AcsI | RAATTY | 3 cut(s) | 1694, 2328, 2491 |
| AcuI | CTGAAG | 7 cut(s) | 386, 1062, 1370, 1715, 2007, 2018, 3056 |
| AcvI | CACGTG | 1 cut(s) | 1637 |
| AfaI | GTAC | 8 cut(s) | 810, 1204, 1497, 1800, 2164, 2580, 2844, 2989 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 399, 504, 519, 1111, 1578, 3383 |
| AflIII | ACRYGT | 2 cut(s) | 219, 900 |
| AgeI | ACCGGT | 1 cut(s) | 2675 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 220, 1831 |
| AhlI | ACTAGT | 1 cut(s) | 2845 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 903, 935 |
| Alw21I | GWGCWC | 3 cut(s) | 294, 842, 1189 |
| Alw26I | GTCTC | 6 cut(s) | 322, 473, 545, 2855, 2923, 3211 |
| Alw44I | GTGCAC | 1 cut(s) | 1185 |
| AlwI | GGATC | 7 cut(s) | 235, 453, 466, 1122, 2244, 2603, 3190 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2030, 2711 |
| Ama87I | CYCGRG | 1 cut(s) | 542 |
| Aor13HI | TCCGGA | 1 cut(s) | 519 |
| AoxI | GGCC | 4 cut(s) | 282, 324, 509, 1581 |
| ApaLI | GTGCAC | 1 cut(s) | 1185 |
| ApeKI | GCWGC | 8 cut(s) | 134, 194, 944, 1654, 1939, 2567, 3428, 3431 |
| ApoI | RAATTY | 3 cut(s) | 1694, 2328, 2491 |
| AseI | ATTAAT | 3 cut(s) | 1005, 2648, 2652 |
| AsiGI | ACCGGT | 1 cut(s) | 2675 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1443 |
| Asp718I | GGTACC | 1 cut(s) | 1495 |
| AspLEI | GCGC | 3 cut(s) | 144, 268, 3150 |
| AspS9I | GGNCC | 9 cut(s) | 79, 510, 517, 668, 685, 1421, 1581, 2633, 3374 |
| AsuC2I | CCSGG | 1 cut(s) | 309 |
| AsuHPI | GGTGA | 9 cut(s) | 718, 1148, 1465, 1835, 1965, 2153, 2676, 2910, 3278 |
| AsuNHI | GCTAGC | 2 cut(s) | 1058, 1463 |
| AvaI | CYCGRG | 1 cut(s) | 542 |
| AvaII | GGWCC | 7 cut(s) | 79, 517, 668, 685, 1421, 2633, 3374 |
| BaeGI | GKGCMC | 1 cut(s) | 1189 |
| BalI | TGGCCA | 1 cut(s) | 284 |
| BamHI | GGATCC | 1 cut(s) | 458 |
| BanI | GGYRCC | 2 cut(s) | 301, 1495 |
| BanII | GRGCYC | 1 cut(s) | 842 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1713, 1745 |
| BbrPI | CACGTG | 1 cut(s) | 1637 |
| BbsI | GAAGAC | 4 cut(s) | 15, 216, 1004, 1034 |
| Bbv12I | GWGCWC | 3 cut(s) | 294, 842, 1189 |
| BbvI | GCAGC | 8 cut(s) | 121, 181, 956, 1641, 1926, 2579, 3418, 3440 |
| BceAI | ACGGC | 1 cut(s) | 2894 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 133, 167 |
| BciVI | GTATCC | 3 cut(s) | 614, 1425, 2860 |
| BcnI | CCSGG | 1 cut(s) | 309 |
| BcoDI | GTCTC | 6 cut(s) | 322, 473, 545, 2855, 2923, 3211 |
| BcuI | ACTAGT | 1 cut(s) | 2845 |
| BfmI | CTRYAG | 1 cut(s) | 879 |
| BfoI | RGCGCY | 1 cut(s) | 269 |
| BfuAI | ACCTGC | 3 cut(s) | 190, 1028, 1762 |
| BfuI | GTATCC | 3 cut(s) | 614, 1425, 2860 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 131, 263 |
| BglII | AGATCT | 1 cut(s) | 2399 |
| BmcAI | AGTACT | 3 cut(s) | 810, 2164, 2844 |
| Bme1390I | CCNGG | 1 cut(s) | 309 |
| Bme18I | GGWCC | 7 cut(s) | 79, 517, 668, 685, 1421, 2633, 3374 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 220, 1831 |
| BmeT110I | CYCGRG | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 9 cut(s) | 79, 510, 517, 668, 685, 1421, 1581, 2633, 3374 |
| BmiI | GGNNCC | 7 cut(s) | 102, 303, 460, 921, 1497, 2227, 3376 |
| BmrFI | CCNGG | 1 cut(s) | 309 |
| BmtI | GCTAGC | 2 cut(s) | 1062, 1467 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3105 |
| BpiI | GAAGAC | 4 cut(s) | 15, 216, 1004, 1034 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 908, 940 |
| BpmI | CTGGAG | 2 cut(s) | 548, 1005 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1223 |
| BpuEI | CTTGAG | 7 cut(s) | 473, 516, 826, 1268, 2090, 2513, 2623 |
| BpuMI | CCSGG | 1 cut(s) | 309 |
| BsaAI | YACGTR | 2 cut(s) | 901, 1637 |
| BsaWI | WCCGGW | 2 cut(s) | 519, 2675 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 903, 933, 2957, 2987 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 399, 504, 519, 1111, 1578, 3383 |
| Bse118I | RCCGGY | 1 cut(s) | 2675 |
| Bse1I | ACTGG | 5 cut(s) | 565, 1584, 1611, 2080, 3328 |
| Bse3DI | GCAATG | 1 cut(s) | 2063 |
| BseAI | TCCGGA | 1 cut(s) | 519 |
| BseGI | GGATG | 7 cut(s) | 147, 1222, 2008, 2018, 2554, 3430, 3455 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 399, 504, 519, 1111, 1578, 3383 |
| BseMI | GCAATG | 1 cut(s) | 2063 |
| BseMII | CTCAG | 6 cut(s) | 1044, 1416, 1701, 1926, 1971, 2493 |
| BseNI | ACTGG | 5 cut(s) | 565, 1584, 1611, 2080, 3328 |
| BseRI | GAGGAG | 5 cut(s) | 110, 196, 389, 392, 2351 |
| BseSI | GKGCMC | 1 cut(s) | 1189 |
| BseXI | GCAGC | 8 cut(s) | 121, 181, 956, 1641, 1926, 2579, 3418, 3440 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 1860 |
| Bsh1236I | CGCG | 2 cut(s) | 131, 233 |
| Bsh1285I | CGRYCG | 2 cut(s) | 505, 1703 |
| BshFI | GGCC | 4 cut(s) | 284, 326, 511, 1583 |
| BshNI | GGYRCC | 2 cut(s) | 301, 1495 |
| BshTI | ACCGGT | 1 cut(s) | 2675 |
| BsiEI | CGRYCG | 2 cut(s) | 505, 1703 |
| BsiHKAI | GWGCWC | 3 cut(s) | 294, 842, 1189 |
| BsiHKCI | CYCGRG | 1 cut(s) | 542 |
| BsiSI | CCGG | 3 cut(s) | 308, 520, 2676 |
| BslFI | GGGAC | 6 cut(s) | 148, 220, 372, 553, 1376, 3360 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 399, 504, 519, 1111, 1578, 3383 |
| BsmAI | GTCTC | 6 cut(s) | 322, 473, 545, 2855, 2923, 3211 |
| BsmBI | CGTCTC | 2 cut(s) | 322, 473 |
| BsmFI | GGGAC | 6 cut(s) | 148, 220, 372, 553, 1376, 3360 |
| BsnI | GGCC | 4 cut(s) | 284, 326, 511, 1583 |
| BsoBI | CYCGRG | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 3 cut(s) | 294, 842, 1189 |
| Bsp13I | TCCGGA | 1 cut(s) | 519 |
| Bsp19I | CCATGG | 2 cut(s) | 285, 2912 |
| BspANI | GGCC | 4 cut(s) | 284, 326, 511, 1583 |
| BspCNI | CTCAG | 6 cut(s) | 1045, 1417, 1702, 1927, 1972, 2492 |
| BspEI | TCCGGA | 1 cut(s) | 519 |
| BspFNI | CGCG | 2 cut(s) | 131, 233 |
| BspHI | TCATGA | 1 cut(s) | 2302 |
| BspLI | GGNNCC | 7 cut(s) | 102, 303, 460, 921, 1497, 2227, 3376 |
| BspMI | ACCTGC | 3 cut(s) | 190, 1028, 1762 |
| BspOI | GCTAGC | 2 cut(s) | 1062, 1467 |
| BspPI | GGATC | 7 cut(s) | 235, 453, 466, 1122, 2244, 2603, 3190 |
| BspT107I | GGYRCC | 2 cut(s) | 301, 1495 |
| BsrDI | GCAATG | 1 cut(s) | 2063 |
| BsrFI | RCCGGY | 1 cut(s) | 2675 |
| BsrI | ACTGG | 5 cut(s) | 565, 1584, 1611, 2080, 3328 |
| BssAI | RCCGGY | 1 cut(s) | 2675 |
| BssT1I | CCWWGG | 6 cut(s) | 285, 327, 513, 2544, 2912, 3075 |
| Bst4CI | ACNGT | 7 cut(s) | 539, 577, 606, 786, 934, 1704, 2956 |
| Bst6I | CTCTTC | 2 cut(s) | 362, 3209 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1073, 1555 |
| BstBAI | YACGTR | 2 cut(s) | 901, 1637 |
| BstC8I | GCNNGC | 5 cut(s) | 334, 393, 1060, 1465, 1659 |
| BstDSI | CCRYGG | 4 cut(s) | 129, 285, 782, 2912 |
| BstEII | GGTNACC | 1 cut(s) | 2916 |
| BstF5I | GGATG | 7 cut(s) | 147, 1222, 2008, 2018, 2554, 3430, 3455 |
| BstFNI | CGCG | 2 cut(s) | 131, 233 |
| BstH2I | RGCGCY | 1 cut(s) | 269 |
| BstHHI | GCGC | 3 cut(s) | 144, 268, 3150 |
| BstMAI | GTCTC | 6 cut(s) | 322, 473, 545, 2855, 2923, 3211 |
| BstMCI | CGRYCG | 2 cut(s) | 505, 1703 |
| BstNSI | RCATGY | 4 cut(s) | 223, 628, 697, 1076 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3105 |
| BstPI | GGTNACC | 1 cut(s) | 2916 |
| BstSCI | CCNGG | 1 cut(s) | 307 |
| BstSFI | CTRYAG | 1 cut(s) | 879 |
| BstSLI | GKGCMC | 1 cut(s) | 1189 |
| BstUI | CGCG | 2 cut(s) | 131, 233 |
| BstV1I | GCAGC | 8 cut(s) | 121, 181, 956, 1641, 1926, 2579, 3418, 3440 |
| BstV2I | GAAGAC | 4 cut(s) | 15, 216, 1004, 1034 |
| BstX2I | RGATCY | 5 cut(s) | 240, 458, 2236, 2399, 2608 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 469, 1814 |
| BstYI | RGATCY | 5 cut(s) | 240, 458, 2236, 2399, 2608 |
| BsuI | GTATCC | 3 cut(s) | 614, 1425, 2860 |
| BsuRI | GGCC | 4 cut(s) | 284, 326, 511, 1583 |
| BtgI | CCRYGG | 4 cut(s) | 129, 285, 782, 2912 |
| BtgZI | GCGATG | 2 cut(s) | 2200, 3449 |
| BtsCI | GGATG | 7 cut(s) | 147, 1222, 2008, 2018, 2554, 3430, 3455 |
| BtsI | GCAGTG | 3 cut(s) | 252, 1062, 2712 |
| BtsIMutI | CAGTG | 7 cut(s) | 252, 573, 930, 1062, 1591, 2712, 2727 |
| BveI | ACCTGC | 3 cut(s) | 190, 1028, 1762 |
| Cac8I | GCNNGC | 5 cut(s) | 334, 393, 1060, 1465, 1659 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2030, 2711 |
| CciI | TCATGA | 1 cut(s) | 2302 |
| CfoI | GCGC | 3 cut(s) | 144, 268, 3150 |
| Cfr10I | RCCGGY | 1 cut(s) | 2675 |
| Cfr13I | GGNCC | 9 cut(s) | 79, 510, 517, 668, 685, 1421, 1581, 2633, 3374 |
| Cfr42I | CCGCGG | 1 cut(s) | 132 |
| CseI | GACGC | 3 cut(s) | 38, 222, 304 |
| Csp6I | GTAC | 8 cut(s) | 809, 1203, 1496, 1799, 2163, 2579, 2843, 2988 |
| CspAI | ACCGGT | 1 cut(s) | 2675 |
| CviQI | GTAC | 8 cut(s) | 809, 1203, 1496, 1799, 2163, 2579, 2843, 2988 |
| DriI | GACNNNNNGTC | 2 cut(s) | 220, 1831 |
| EaeI | YGGCCR | 2 cut(s) | 282, 324 |
| Eam1104I | CTCTTC | 2 cut(s) | 362, 3209 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 220, 1831 |
| EarI | CTCTTC | 2 cut(s) | 362, 3209 |
| Ecl136II | GAGCTC | 1 cut(s) | 840 |
| Eco130I | CCWWGG | 6 cut(s) | 285, 327, 513, 2544, 2912, 3075 |
| Eco24I | GRGCYC | 1 cut(s) | 842 |
| Eco32I | GATATC | 1 cut(s) | 2413 |
| Eco47I | GGWCC | 7 cut(s) | 79, 517, 668, 685, 1421, 2633, 3374 |
| Eco53kI | GAGCTC | 1 cut(s) | 840 |
| Eco57I | CTGAAG | 7 cut(s) | 386, 1062, 1370, 1715, 2007, 2018, 3056 |
| Eco72I | CACGTG | 1 cut(s) | 1637 |
| Eco88I | CYCGRG | 1 cut(s) | 542 |
| Eco91I | GGTNACC | 1 cut(s) | 2916 |
| EcoICRI | GAGCTC | 1 cut(s) | 840 |
| EcoO109I | RGGNCCY | 2 cut(s) | 685, 3374 |
| EcoO65I | GGTNACC | 1 cut(s) | 2916 |
| EcoRI | GAATTC | 1 cut(s) | 2328 |
| EcoRV | GATATC | 1 cut(s) | 2413 |
| EcoT14I | CCWWGG | 6 cut(s) | 285, 327, 513, 2544, 2912, 3075 |
| EcoT22I | ATGCAT | 2 cut(s) | 1749, 2134 |
| EcoT38I | GRGCYC | 1 cut(s) | 842 |
| ErhI | CCWWGG | 6 cut(s) | 285, 327, 513, 2544, 2912, 3075 |
| Esp3I | CGTCTC | 2 cut(s) | 322, 473 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1132, 1164 |
| FaqI | GGGAC | 6 cut(s) | 148, 220, 372, 553, 1376, 3360 |
| FauI | CCCGC | 4 cut(s) | 325, 400, 578, 3385 |
| FblI | GTMKAC | 1 cut(s) | 1845 |
| FokI | GGATG | 7 cut(s) | 134, 1229, 2015, 2025, 2561, 3437, 3442 |
| FriOI | GRGCYC | 1 cut(s) | 842 |
| FspAI | RTGCGCAY | 1 cut(s) | 143 |
| FspI | TGCGCA | 1 cut(s) | 143 |
| GlaI | GCGC | 3 cut(s) | 143, 267, 3149 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 2 cut(s) | 548, 1005 |
| HaeII | RGCGCY | 1 cut(s) | 269 |
| HaeIII | GGCC | 4 cut(s) | 284, 326, 511, 1583 |
| HapII | CCGG | 3 cut(s) | 308, 520, 2676 |
| HgaI | GACGC | 3 cut(s) | 38, 222, 304 |
| HhaI | GCGC | 3 cut(s) | 144, 268, 3150 |
| Hin6I | GCGC | 3 cut(s) | 142, 266, 3148 |
| HinP1I | GCGC | 3 cut(s) | 142, 266, 3148 |
| HindIII | AAGCTT | 1 cut(s) | 2802 |
| HpaII | CCGG | 3 cut(s) | 308, 520, 2676 |
| HphI | GGTGA | 9 cut(s) | 718, 1148, 1465, 1835, 1965, 2153, 2676, 2910, 3278 |
| Hpy166II | GTNNAC | 3 cut(s) | 1187, 1799, 1846 |
| Hpy8I | GTNNAC | 3 cut(s) | 1187, 1799, 1846 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 218, 325, 503 |
| HpyAV | CCTTC | 6 cut(s) | 698, 1158, 1993, 3031, 3415, 3472 |
| HpyCH4III | ACNGT | 7 cut(s) | 539, 577, 606, 786, 934, 1704, 2956 |
| HpyCH4IV | ACGT | 4 cut(s) | 482, 549, 900, 1636 |
| HpySE526I | ACGT | 4 cut(s) | 482, 549, 900, 1636 |
| HspAI | GCGC | 3 cut(s) | 142, 266, 3148 |
| Kpn2I | TCCGGA | 1 cut(s) | 519 |
| KpnI | GGTACC | 1 cut(s) | 1499 |
| KspI | CCGCGG | 1 cut(s) | 132 |
| Lsp1109I | GCAGC | 8 cut(s) | 121, 181, 956, 1641, 1926, 2579, 3418, 3440 |
| MaeII | ACGT | 4 cut(s) | 482, 549, 900, 1636 |
| MaeIII | GTNAC | 6 cut(s) | 1535, 1720, 1823, 2026, 2916, 2950 |
| MfeI | CAATTG | 1 cut(s) | 1416 |
| MflI | RGATCY | 5 cut(s) | 240, 458, 2236, 2399, 2608 |
| MhlI | GDGCHC | 3 cut(s) | 294, 842, 1189 |
| MlsI | TGGCCA | 1 cut(s) | 284 |
| MluNI | TGGCCA | 1 cut(s) | 284 |
| MlyI | GAGTC | 5 cut(s) | 170, 1730, 2128, 2437, 2471 |
| MmeI | TCCRAC | 3 cut(s) | 1501, 1700, 2094 |
| Mox20I | TGGCCA | 1 cut(s) | 284 |
| Mph1103I | ATGCAT | 2 cut(s) | 1749, 2134 |
| MroI | TCCGGA | 1 cut(s) | 519 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1443 |
| MscI | TGGCCA | 1 cut(s) | 284 |
| MslI | CAYNNNNRTG | 2 cut(s) | 935, 1635 |
| Msp20I | TGGCCA | 1 cut(s) | 284 |
| MspA1I | CMGCKG | 5 cut(s) | 131, 263, 395, 2138, 3431 |
| MspI | CCGG | 3 cut(s) | 308, 520, 2676 |
| MspR9I | CCNGG | 1 cut(s) | 309 |
| MunI | CAATTG | 1 cut(s) | 1416 |
| MvnI | CGCG | 2 cut(s) | 131, 233 |
| NciI | CCSGG | 1 cut(s) | 309 |
| NcoI | CCATGG | 2 cut(s) | 285, 2912 |
| NheI | GCTAGC | 2 cut(s) | 1058, 1463 |
| NlaIV | GGNNCC | 7 cut(s) | 102, 303, 460, 921, 1497, 2227, 3376 |
| NmeAIII | GCCGAG | 2 cut(s) | 77, 184 |
| NmuCI | GTSAC | 2 cut(s) | 1823, 2916 |
| NsbI | TGCGCA | 1 cut(s) | 143 |
| NsiI | ATGCAT | 2 cut(s) | 1749, 2134 |
| NspI | RCATGY | 4 cut(s) | 223, 628, 697, 1076 |
| PacI | TTAATTAA | 1 cut(s) | 2652 |
| PagI | TCATGA | 1 cut(s) | 2302 |
| PaqCI | CACCTGC | 1 cut(s) | 190 |
| PciI | ACATGT | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1443 |
| PfeI | GAWTC | 5 cut(s) | 1296, 1783, 2033, 2458, 3273 |
| PflFI | GACNNNGTC | 2 cut(s) | 32, 932 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1111 |
| PinAI | ACCGGT | 1 cut(s) | 2675 |
| Ple19I | CGATCG | 1 cut(s) | 505 |
| PleI | GAGTC | 5 cut(s) | 169, 1730, 2127, 2436, 2471 |
| PmaCI | CACGTG | 1 cut(s) | 1637 |
| PmlI | CACGTG | 1 cut(s) | 1637 |
| PpsI | GAGTC | 5 cut(s) | 169, 1730, 2127, 2436, 2471 |
| Ppu21I | YACGTR | 2 cut(s) | 901, 1637 |
| PpuMI | RGGWCCY | 2 cut(s) | 685, 3374 |
| PscI | ACATGT | 1 cut(s) | 219 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3105 |
| PshBI | ATTAAT | 3 cut(s) | 1005, 2648, 2652 |
| Psp124BI | GAGCTC | 1 cut(s) | 842 |
| Psp1406I | AACGTT | 1 cut(s) | 549 |
| Psp5II | RGGWCCY | 2 cut(s) | 685, 3374 |
| PspCI | CACGTG | 1 cut(s) | 1637 |
| PspEI | GGTNACC | 1 cut(s) | 2916 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 7 cut(s) | 102, 303, 460, 921, 1497, 2227, 3376 |
| PspPI | GGNCC | 9 cut(s) | 79, 510, 517, 668, 685, 1421, 1581, 2633, 3374 |
| PspPPI | RGGWCCY | 2 cut(s) | 685, 3374 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2030, 2711 |
| PsuI | RGATCY | 5 cut(s) | 240, 458, 2236, 2399, 2608 |
| PsyI | GACNNNGTC | 2 cut(s) | 32, 932 |
| PvuI | CGATCG | 1 cut(s) | 505 |
| PvuII | CAGCTG | 2 cut(s) | 2138, 3431 |
| RsaI | GTAC | 8 cut(s) | 810, 1204, 1497, 1800, 2164, 2580, 2844, 2989 |
| RsaNI | GTAC | 8 cut(s) | 809, 1203, 1496, 1799, 2163, 2579, 2843, 2988 |
| RseI | CAYNNNNRTG | 2 cut(s) | 935, 1635 |
| SacI | GAGCTC | 1 cut(s) | 842 |
| SacII | CCGCGG | 1 cut(s) | 132 |
| Sau96I | GGNCC | 9 cut(s) | 79, 510, 517, 668, 685, 1421, 1581, 2633, 3374 |
| ScaI | AGTACT | 3 cut(s) | 810, 2164, 2844 |
| SchI | GAGTC | 5 cut(s) | 170, 1730, 2128, 2437, 2471 |
| ScrFI | CCNGG | 1 cut(s) | 309 |
| SduI | GDGCHC | 3 cut(s) | 294, 842, 1189 |
| SfcI | CTRYAG | 1 cut(s) | 879 |
| Sfr303I | CCGCGG | 1 cut(s) | 132 |
| SgrBI | CCGCGG | 1 cut(s) | 132 |
| SinI | GGWCC | 7 cut(s) | 79, 517, 668, 685, 1421, 2633, 3374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 935, 1635 |
| SmlI | CTYRAG | 7 cut(s) | 488, 531, 841, 1283, 2069, 2528, 2602 |
| SmoI | CTYRAG | 7 cut(s) | 488, 531, 841, 1283, 2069, 2528, 2602 |
| SpeI | ACTAGT | 1 cut(s) | 2845 |
| SspI | AATATT | 1 cut(s) | 1756 |
| SstI | GAGCTC | 1 cut(s) | 842 |
| StyD4I | CCNGG | 1 cut(s) | 307 |
| StyI | CCWWGG | 6 cut(s) | 285, 327, 513, 2544, 2912, 3075 |
| TaaI | ACNGT | 7 cut(s) | 539, 577, 606, 786, 934, 1704, 2956 |
| TaiI | ACGT | 4 cut(s) | 485, 552, 903, 1639 |
| TaqI | TCGA | 7 cut(s) | 36, 213, 347, 501, 1621, 1699, 2927 |
| TatI | WGTACW | 6 cut(s) | 808, 1202, 1798, 2162, 2578, 2842 |
| TauI | GCSGC | 5 cut(s) | 134, 158, 266, 511, 3057 |
| TfiI | GAWTC | 5 cut(s) | 1296, 1783, 2033, 2458, 3273 |
| TscAI | CASTG | 7 cut(s) | 259, 580, 937, 1069, 1591, 2712, 2727 |
| TseFI | GTSAC | 2 cut(s) | 1823, 2916 |
| TseI | GCWGC | 8 cut(s) | 134, 194, 944, 1654, 1939, 2567, 3428, 3431 |
| Tsp45I | GTSAC | 2 cut(s) | 1823, 2916 |
| TspGWI | ACGGA | 3 cut(s) | 487, 884, 3149 |
| TspRI | CASTG | 7 cut(s) | 259, 580, 937, 1069, 1591, 2712, 2727 |
| Tth111I | GACNNNGTC | 2 cut(s) | 32, 932 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1111 |
| VneI | GTGCAC | 1 cut(s) | 1185 |
| VpaK11BI | GGWCC | 7 cut(s) | 79, 517, 668, 685, 1421, 2633, 3374 |
| VspI | ATTAAT | 3 cut(s) | 1005, 2648, 2652 |
| XapI | RAATTY | 3 cut(s) | 1694, 2328, 2491 |
| XbaI | TCTAGA | 2 cut(s) | 679, 2332 |
| XceI | RCATGY | 4 cut(s) | 223, 628, 697, 1076 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2014 |
| XmiI | GTMKAC | 1 cut(s) | 1845 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1443 |
| ZrmI | AGTACT | 3 cut(s) | 810, 2164, 2844 |
| Zsp2I | ATGCAT | 2 cut(s) | 1749, 2134 |