FvH4_6g24123

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018057
Physical Location & Seq
Forward (+)
18188394 .. 18188931
538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24123.t1

Sequence Viewer

Length: 456 bp
ATGGCAGAAGATGGTGGCAGCAGTGAAGGCGAAGGAGTGTGTAGCAGGGGTACTGCAGCTAATACTTCCTGGCCAATAAAGATCACACTGTCAACAGATCAGATGCGTTGGGACAGCCTCAAGATTTCACCCTCAAAGGAATTACAAGAGCAATTTATAGGAAAGATGAGTGAGGCCAGCCGCAAAGCATTAGATTCGTGGATTCCTGTTGAAATGTTCATGTATGATGTTGATACTTGTGAAACTTACGAGATAGAGTTGGCAAAGAAGGAGTCCTTTTGGTTTGAACCAACTCCTTGTCTTGGTGAGAAGAAAAAGAGTGTTGAAGGCACAACCTTCTATGGCCAAGAGATTGGGTTGAGATGGTTAGGTAGCAAAACCATAGACGAACTTGAGTTTTCAGTTTTGTATGTACCAAGACGAGATCCGCTGGACTTGCGTACCTTAAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.2

Weight (kDa)

4.77

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24123
prunus_persica Prupe.6G327900_v2.0.a1
pyrus_communis pycom04g18320
rosa_laevigata RLG00000023301
rosa_multiflora Rmu_sc0002280.1_g000003
rosa_roxburghii Rroxscaffold_6G00398630
rosa_rugosa Rorug03G0204800
rosa_samantha Rh3AG252900 Rh3BG289500 Rh3CG286900 Rh3DG282400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 181, 428
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 71, 343
AcsI RAATTY 1 cut(s) 450
AfaI GTAC 3 cut(s) 52, 414, 442
AfiI CCNNNNNNNGG 1 cut(s) 302
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 3 cut(s) 212, 287, 326
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 1 cut(s) 419
AoxI GGCC 3 cut(s) 71, 174, 343
ApeKI GCWGC 2 cut(s) 18, 56
ApoI RAATTY 1 cut(s) 450
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuHPI GGTGA 2 cut(s) 120, 317
BaeI ACNNNNGTAYC 1 cut(s) 424
BalI TGGCCA 2 cut(s) 73, 345
BbvI GCAGC 2 cut(s) 30, 68
BccI CCATC 2 cut(s) 5, 357
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 1 cut(s) 70
BfmI CTRYAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 445
BisI GCNGC 3 cut(s) 19, 57, 181
BlsI GCNGC 3 cut(s) 20, 58, 182
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 104, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 30, 68
BshFI GGCC 3 cut(s) 73, 176, 345
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 73, 176, 345
Bsp143I GATC 3 cut(s) 81, 97, 424
BspACI CCGC 2 cut(s) 181, 428
BspANI GGCC 3 cut(s) 73, 176, 345
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 445
BssMI GATC 3 cut(s) 81, 97, 424
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 84, 100, 427
BstMBI GATC 3 cut(s) 81, 97, 424
BstMWI GCNNNNNNNGC 2 cut(s) 27, 436
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 30, 68
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 353
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 3 cut(s) 73, 176, 345
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 86
Cac8I GCNNGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 51, 413, 441
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 59, 73, 117, 176, 180, 345
CviKI_1 RGCY 6 cut(s) 59, 73, 117, 176, 180, 345
CviQI GTAC 3 cut(s) 51, 413, 441
DpnI GATC 3 cut(s) 83, 99, 426
DpnII GATC 3 cut(s) 81, 97, 424
EaeI YGGCCR 2 cut(s) 71, 343
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 223
FaiI YATR 6 cut(s) 158, 221, 225, 342, 383, 411
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 19, 57, 181
Fsp4HI GCNGC 3 cut(s) 19, 57, 181
GluI GCNGC 3 cut(s) 19, 57, 181
HaeIII GGCC 3 cut(s) 73, 176, 345
Hin1II CATG 1 cut(s) 223
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 3 cut(s) 194, 202, 272
HphI GGTGA 2 cut(s) 120, 317
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 5 cut(s) 20, 26, 262, 320, 346
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 436
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 3 cut(s) 81, 97, 424
LpnPI CCDG 6 cut(s) 31, 55, 82, 190, 219, 416
Lsp1109I GCAGC 2 cut(s) 30, 68
LweI GCATC 1 cut(s) 93
MalI GATC 3 cut(s) 83, 99, 426
MboI GATC 3 cut(s) 81, 97, 424
MboII GAAGA 2 cut(s) 20, 322
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 2 cut(s) 73, 345
MluCI AATT 3 cut(s) 140, 152, 450
MluNI TGGCCA 2 cut(s) 73, 345
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 3 cut(s) 128, 142, 166
Mox20I TGGCCA 2 cut(s) 73, 345
MscI TGGCCA 2 cut(s) 73, 345
MseI TTAA 1 cut(s) 446
Msp20I TGGCCA 2 cut(s) 73, 345
MspA1I CMGCKG 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 27, 436
NdeII GATC 3 cut(s) 81, 97, 424
NlaIII CATG 1 cut(s) 223
PfeI GAWTC 2 cut(s) 194, 202
PkrI GCNGC 3 cut(s) 20, 58, 182
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 52, 414, 442
RsaNI GTAC 3 cut(s) 51, 413, 441
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 19, 57, 181
Sau3AI GATC 3 cut(s) 81, 97, 424
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 70
SetI ASST 4 cut(s) 61, 338, 373, 446
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 54
SmlI CTYRAG 3 cut(s) 119, 392, 445
SmoI CTYRAG 3 cut(s) 119, 392, 445
Sse9I AATT 3 cut(s) 140, 152, 450
SsiI CCGC 2 cut(s) 181, 428
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 90
TasI AATT 3 cut(s) 140, 152, 450
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 194, 202
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 28, 93
TseI GCWGC 2 cut(s) 18, 56
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 2 cut(s) 28, 93
Vha464I CTTAAG 1 cut(s) 445
XapI RAATTY 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.