Rh3DG282400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018057
Physical Location & Seq
Reverse (-)
28738720 .. 28739300
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG282400.1

Sequence Viewer

Length: 537 bp
ATGGCAGAAGATAGTGGCAGCAGTAAAGGCAAACGAGTGTGTAGCAGCGCTACAGAAGCTAGTACTTCCTGGCCAGTAAAGATCAGACTCTCAACGGATCAGATGCGTTGGAACAGCCTCAAGATTTCACCCTCAAAGGAATTACAAGAGCAGATTATAGGTAAGATGAGTGAGGCTAGCCGCAAAGGGCTGGATTCATGGATTCCTGTTGAAATGTTCATTTATGATGTTGATACTTGTGAAACTTACAAGGTAGAGCTGGCAAAGAAGAAGTCCTTTTGGTTTGAACCAACTCCTTTTTTTGATGAGAAGAAAAGGGTGTTGAAGGAACAACCTTGTTCTGATCTGAAGAAGGCGAGGGAAGAGTTTGCTTATTCCATCGAGCCTTTTCAACAAATTGTGAAGAAAAGGAATCTTAGCTATGGTCAAGAGATTGGCTTGAGATGGTCAGGTAGCAAATACATAGACAAACTTGAGTTTTCAGTTTTGTATGTACCAAGACGCGATCGGCTGGACTTACAAACCTTAAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.78

Weight (kDa)

9.15

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24123
prunus_persica Prupe.6G327900_v2.0.a1
pyrus_communis pycom04g18320
rosa_laevigata RLG00000023301
rosa_multiflora Rmu_sc0002280.1_g000003
rosa_roxburghii Rroxscaffold_6G00398630
rosa_rugosa Rorug03G0204800
rosa_samantha Rh3AG252900 Rh3BG289500 Rh3CG286900 Rh3DG282400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 504
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 64, 495
AfeI AGCGCT 1 cut(s) 49
AflII CTTAAG 1 cut(s) 526
AgsI TTSAA 4 cut(s) 212, 287, 325, 392
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 59, 259, 420
AluI AGCT 3 cut(s) 59, 259, 420
AlwI GGATC 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 18, 45
ApoI RAATTY 1 cut(s) 531
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 73
BbvI GCAGC 2 cut(s) 30, 57
BccI CCATC 2 cut(s) 386, 438
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 2 cut(s) 60, 177
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 526
BisI GCNGC 3 cut(s) 19, 46, 181
BlsI GCNGC 3 cut(s) 20, 47, 182
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 93
BmtI GCTAGC 1 cut(s) 180
BpuEI CTTGAG 3 cut(s) 104, 460, 494
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 30, 57
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 508
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 81, 97, 343, 505
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 73
BspFNI CGCG 1 cut(s) 504
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 74
BssMI GATC 4 cut(s) 81, 97, 343, 505
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 357
BstAFI CTTAAG 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 178, 261
BstDEI CTNAG 1 cut(s) 416
BstFNI CGCG 1 cut(s) 504
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 4 cut(s) 84, 100, 346, 508
BstMBI GATC 4 cut(s) 81, 97, 343, 505
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 27, 56
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 30, 57
BsuRI GGCC 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 178, 261
CfoI GCGC 1 cut(s) 50
CseI GACGC 1 cut(s) 510
Csp6I GTAC 2 cut(s) 63, 494
CviAII CATG 1 cut(s) 198
CviQI GTAC 2 cut(s) 63, 494
DdeI CTNAG 1 cut(s) 416
DpnI GATC 4 cut(s) 83, 99, 345, 507
DpnII GATC 4 cut(s) 81, 97, 343, 505
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco47III AGCGCT 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 158, 199, 225, 423, 464, 492
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 3 cut(s) 19, 46, 181
Fsp4HI GCNGC 3 cut(s) 19, 46, 181
FspBI CTAG 2 cut(s) 60, 177
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 19, 46, 181
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 73
HgaI GACGC 1 cut(s) 510
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 4 cut(s) 87, 194, 202, 412
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 86, 102, 343, 348
Hpy188III TCNNGA 2 cut(s) 121, 428
HpyAV CCTTC 2 cut(s) 319, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 56
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 4 cut(s) 81, 97, 343, 505
LpnPI CCDG 8 cut(s) 55, 82, 87, 176, 219, 245, 435, 497
Lsp1109I GCAGC 2 cut(s) 30, 57
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 60, 177
MalI GATC 4 cut(s) 83, 99, 345, 507
MboI GATC 4 cut(s) 81, 97, 343, 505
MboII GAAGA 6 cut(s) 20, 280, 322, 361, 374, 415
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 3 cut(s) 140, 396, 531
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 128, 142, 166, 351
Mox20I TGGCCA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 73
MseI TTAA 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 526
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 2 cut(s) 27, 56
NdeII GATC 4 cut(s) 81, 97, 343, 505
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 201
PfeI GAWTC 3 cut(s) 194, 202, 412
PkrI GCNGC 3 cut(s) 20, 47, 182
Ple19I CGATCG 1 cut(s) 508
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PvuI CGATCG 1 cut(s) 508
RsaI GTAC 2 cut(s) 64, 495
RsaNI GTAC 2 cut(s) 63, 494
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 19, 46, 181
Sau3AI GATC 4 cut(s) 81, 97, 343, 505
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 70
SetI ASST 8 cut(s) 61, 163, 255, 261, 337, 422, 454, 527
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 119, 439, 473, 526
SmoI CTYRAG 4 cut(s) 119, 439, 473, 526
Sse9I AATT 3 cut(s) 140, 396, 531
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 60, 177
StyD4I CCNGG 1 cut(s) 68
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 140, 396, 531
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 194, 202, 412
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TseI GCWGC 2 cut(s) 18, 45
TspDTI ATGAA 2 cut(s) 186, 208
TspGWI ACGGA 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 526
XapI RAATTY 1 cut(s) 531
XspI CTAG 2 cut(s) 60, 177
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.