Rmu_sc0002280.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002280.1
OG0018057
Physical Location & Seq
Forward (+)
11829 .. 12476
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002280.1_g000003.1.cds

Sequence Viewer

Length: 648 bp
atggcagaagatagtggcagcagtaaaggcaaacgagtgtgtagcagcgctacagaagctagtacttcctggccagtaaagatcagactctcaacggatcagatgcgttggaacagcctcaagatttcaccctcaaaggaattacaagagcagattatagctaagatgagtgaggctagccgcaaagggctagattcatggattcctgttgaaatgttcatttatgatgttgatacttgtgaaacttacaaggtagagctggcaaagaagagtaagatgagtgaggctagccgcaaagggctggattcatggattcctgttgaaatgttcatttatgatgttgatacttgtgaaacttacaaggtagagctggcaaagaagaagtccttttggtttgaaccaactcctttttttgatgagaagaaaagggtgttgaaggaacaaccttgttctgatctgaagaaggcgagggaagagtttgcttattccatcgagccttttcaacaaattgtgaagaaaaggaatcttagctatggtcaagagattggcttgagatggtcaggtagcaaatacatagacaaacttgagttttcagttttgtatgtaccaagacgcgatcggctggacttacaaaccttaagaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

25.07

Weight (kDa)

8.87

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24123
prunus_persica Prupe.6G327900_v2.0.a1
pyrus_communis pycom04g18320
rosa_laevigata RLG00000023301
rosa_multiflora Rmu_sc0002280.1_g000003
rosa_roxburghii Rroxscaffold_6G00398630
rosa_rugosa Rorug03G0204800
rosa_samantha Rh3AG252900 Rh3BG289500 Rh3CG286900 Rh3DG282400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AciI CCGC 2 cut(s) 181, 292
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 2 cut(s) 64, 606
AfeI AGCGCT 1 cut(s) 49
AflII CTTAAG 1 cut(s) 637
AgsI TTSAA 5 cut(s) 212, 323, 398, 436, 503
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 5 cut(s) 59, 161, 259, 370, 531
AluI AGCT 5 cut(s) 59, 161, 259, 370, 531
AlwI GGATC 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 18, 45
ApoI RAATTY 1 cut(s) 642
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 2 cut(s) 176, 287
BalI TGGCCA 1 cut(s) 73
BbvI GCAGC 2 cut(s) 30, 57
BccI CCATC 2 cut(s) 497, 549
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 4 cut(s) 60, 177, 191, 288
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 637
BisI GCNGC 4 cut(s) 19, 46, 181, 292
BlsI GCNGC 4 cut(s) 20, 47, 182, 293
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 93
BmtI GCTAGC 2 cut(s) 180, 291
BpuEI CTTGAG 3 cut(s) 104, 571, 605
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 30, 57
Bsh1236I CGCG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 619
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 81, 97, 454, 616
BspACI CCGC 2 cut(s) 181, 292
BspANI GGCC 1 cut(s) 73
BspFNI CGCG 1 cut(s) 615
BspOI GCTAGC 2 cut(s) 180, 291
BspPI GGATC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 637
BsrI ACTGG 1 cut(s) 74
BssMI GATC 4 cut(s) 81, 97, 454, 616
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 263, 468
BstAFI CTTAAG 1 cut(s) 637
BstC8I GCNNGC 4 cut(s) 178, 261, 289, 372
BstDEI CTNAG 2 cut(s) 162, 527
BstFNI CGCG 1 cut(s) 615
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 4 cut(s) 84, 100, 457, 619
BstMBI GATC 4 cut(s) 81, 97, 454, 616
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 27, 56
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 30, 57
BsuRI GGCC 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 178, 261, 289, 372
CfoI GCGC 1 cut(s) 50
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 63, 605
CviAII CATG 2 cut(s) 198, 309
CviQI GTAC 2 cut(s) 63, 605
DdeI CTNAG 2 cut(s) 162, 527
DpnI GATC 4 cut(s) 83, 99, 456, 618
DpnII GATC 4 cut(s) 81, 97, 454, 616
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 263, 468
EarI CTCTTC 2 cut(s) 263, 468
Eco47III AGCGCT 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 201, 312
FaiI YATR 8 cut(s) 158, 199, 225, 310, 336, 534, 575, 603
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 2 cut(s) 197, 308
Fnu4HI GCNGC 4 cut(s) 19, 46, 181, 292
Fsp4HI GCNGC 4 cut(s) 19, 46, 181, 292
FspBI CTAG 4 cut(s) 60, 177, 191, 288
GlaI GCGC 1 cut(s) 49
GluI GCNGC 4 cut(s) 19, 46, 181, 292
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 73
HgaI GACGC 1 cut(s) 621
HhaI GCGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 201, 312
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 6 cut(s) 87, 194, 202, 305, 313, 523
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 86, 102, 454, 459
Hpy188III TCNNGA 2 cut(s) 121, 539
HpyAV CCTTC 2 cut(s) 430, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 56
HpyF3I CTNAG 2 cut(s) 162, 527
Hsp92II CATG 2 cut(s) 201, 312
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 4 cut(s) 81, 97, 454, 616
Lsp1109I GCAGC 2 cut(s) 30, 57
LweI GCATC 1 cut(s) 93
MaeI CTAG 4 cut(s) 60, 177, 191, 288
MalI GATC 4 cut(s) 83, 99, 456, 618
MboI GATC 4 cut(s) 81, 97, 454, 616
MboII GAAGA 7 cut(s) 20, 280, 391, 433, 472, 485, 526
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 3 cut(s) 140, 507, 642
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 5 cut(s) 128, 142, 166, 277, 462
Mox20I TGGCCA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 73
MseI TTAA 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 637
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 2 cut(s) 27, 56
NdeII GATC 4 cut(s) 81, 97, 454, 616
NheI GCTAGC 2 cut(s) 176, 287
NlaIII CATG 2 cut(s) 201, 312
PfeI GAWTC 5 cut(s) 194, 202, 305, 313, 523
PkrI GCNGC 4 cut(s) 20, 47, 182, 293
Ple19I CGATCG 1 cut(s) 619
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PvuI CGATCG 1 cut(s) 619
RsaI GTAC 2 cut(s) 64, 606
RsaNI GTAC 2 cut(s) 63, 605
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 4 cut(s) 19, 46, 181, 292
Sau3AI GATC 4 cut(s) 81, 97, 454, 616
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 70
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 119, 550, 584, 637
SmoI CTYRAG 4 cut(s) 119, 550, 584, 637
Sse9I AATT 3 cut(s) 140, 507, 642
SsiI CCGC 2 cut(s) 181, 292
SspMI CTAG 4 cut(s) 60, 177, 191, 288
StyD4I CCNGG 1 cut(s) 68
TaqI TCGA 1 cut(s) 492
TasI AATT 3 cut(s) 140, 507, 642
TatI WGTACW 1 cut(s) 62
TauI GCSGC 2 cut(s) 183, 294
TfiI GAWTC 5 cut(s) 194, 202, 305, 313, 523
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TseI GCWGC 2 cut(s) 18, 45
TspDTI ATGAA 4 cut(s) 186, 208, 297, 319
TspGWI ACGGA 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 637
XapI RAATTY 1 cut(s) 642
XspI CTAG 4 cut(s) 60, 177, 191, 288
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.