Rorug03G0204800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018057
Physical Location & Seq
Forward (+)
18172319 .. 18172732
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0204800.1

Sequence Viewer

Length: 414 bp
ATGTTCTTCCTCCGATTCCACTCAGTGGACACCAACCACCCCGTCAGCCTTGAAGACGCTGAGTTCACCACCATCTCCGCTGCCACCACCCAATCAAACCCTAGGTTCAGCGAGTGGAGAGGAATCGCGCACCTGTTTCGAACACGAGGAAACTCGTTGCTGCCGAACAAGGTGCCAAGTCCACTCTCCTCTTCGTCGTCGCCGAGTCCACTCTCCTTTTCGATGCAGCGTTTGGGCATGGTGACGCTGTCGACGTGGGGCTGCAAGATTCCTTGTTGGTCTGATCGGAGAATTGGGCTCTCAGGTTTTCGGCTGGTGCTAGTGGTTGGCCTCCATATGATAGGCGACGCCGTTGGTGGTGGTATCACTCTCGGGGGTGATGATGATGATGGTTGGTGGCAGAATAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

6.89

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24123
prunus_persica Prupe.6G327900_v2.0.a1
pyrus_communis pycom04g18320
rosa_laevigata RLG00000023301
rosa_multiflora Rmu_sc0002280.1_g000003
rosa_roxburghii Rroxscaffold_6G00398630
rosa_rugosa Rorug03G0204800
rosa_samantha Rh3AG252900 Rh3BG289500 Rh3CG286900 Rh3DG282400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 251
AccII CGCG 1 cut(s) 128
AciI CCGC 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 53
AjiI CACGTC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 4 cut(s) 80, 160, 226, 261
AspA2I CCTAGG 1 cut(s) 101
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 58, 253, 389
AsuII TTCGAA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 371
AvrII CCTAGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 67, 147, 238, 248
BccI CCATC 2 cut(s) 80, 383
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 154, 188
BfaI CTAG 2 cut(s) 102, 320
BisI GCNGC 4 cut(s) 81, 161, 227, 262
BlnI CCTAGG 1 cut(s) 101
BlsI GCNGC 4 cut(s) 82, 162, 228, 263
BmeT110I CYCGRG 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 36, 51, 315
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 67, 147, 238, 248
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 25
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 35, 52, 314
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 22, 60, 301
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 67, 147, 238, 248
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 330
BtrI CACGTC 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 30
CfoI GCGC 1 cut(s) 130
CseI GACGC 3 cut(s) 65, 253, 356
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 48, 261, 298, 313, 330
CviKI_1 RGCY 5 cut(s) 48, 261, 298, 313, 330
DdeI CTNAG 3 cut(s) 22, 60, 301
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 239, 336, 338
FatI CATG 1 cut(s) 237
FauNDI CATATG 1 cut(s) 336
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 81, 161, 227, 262
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 81, 161, 227, 262
FspBI CTAG 2 cut(s) 102, 320
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 81, 161, 227, 262
HaeIII GGCC 1 cut(s) 330
HgaI GACGC 3 cut(s) 65, 253, 356
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 4 cut(s) 15, 123, 205, 268
HphI GGTGA 3 cut(s) 58, 253, 389
Hpy166II GTNNAC 5 cut(s) 28, 66, 182, 209, 252
Hpy188I TCNGA 3 cut(s) 14, 283, 288
Hpy8I GTNNAC 5 cut(s) 28, 66, 182, 209, 252
Hpy99I CGWCG 4 cut(s) 199, 202, 256, 350
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 226, 264
HpyF3I CTNAG 3 cut(s) 22, 60, 301
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 3 cut(s) 146, 288, 299
Lsp1109I GCAGC 4 cut(s) 67, 147, 238, 248
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 102, 320
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 65, 183
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 5 cut(s) 20, 113, 140, 199, 341
MspA1I CMGCKG 1 cut(s) 80
MvnI CGCG 1 cut(s) 128
NdeI CATATG 1 cut(s) 336
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 241
NspV TTCGAA 1 cut(s) 139
PcsI WCGNNNNNNNCGW 3 cut(s) 161, 200, 251
PfeI GAWTC 3 cut(s) 15, 123, 268
PflFI GACNNNGTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 4 cut(s) 82, 162, 228, 263
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 250
SatI GCNGC 4 cut(s) 81, 161, 227, 262
Sau3AI GATC 1 cut(s) 283
SchI GAGTC 1 cut(s) 214
SduI GDGCHC 1 cut(s) 300
SetI ASST 5 cut(s) 107, 135, 174, 257, 307
SfaNI GCATC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 139
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 102, 320
StyI CCWWGG 1 cut(s) 101
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 139, 221, 251
TasI AATT 1 cut(s) 291
TfiI GAWTC 3 cut(s) 15, 123, 268
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 80, 160, 226, 261
Tsp45I GTSAC 1 cut(s) 241
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 25
XmaJI CCTAGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 2 cut(s) 102, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.