FvH4_6g25010

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014768
Physical Location & Seq
Reverse (-)
18938139 .. 18941304
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25010.t4

Sequence Viewer

Length: 1488 bp
ATGATTTCCATGTACTCGAGAAATGGCAGTTTTGATGATGCACGCCATTTGCTTGCTACAATGACAGAGCCAAACCTTGTGAGTTATAATACGTTGATTTCTGGTTTAGCACGTCATGGGTATCATAAAGAATCCATATATCTCTTTCAAAGAATGCAACAAGGTTGTGAATGTTTGTTATTAGACCAGTTCACGTTTGTAAGTGTAGTTGGAACTTGTGCTTCCCTAGGTGCATTGGCAATGTTGCGTCAAGTTCATGGGGTGGCGATTGCAATTGGCTTGGAAATGAATATCGTTGCTTGCAATTCTTTGGTCAATTCTTATGGAAAATGTGGTGAACCAGACACCTCATATTCTGTATTCAGTCGGATGCTAGAGAGGGACGTCGTGTCTTGGACCTCAATGATTGCTTCTTATGCAAGTGCATCAAGAATGGATGACGCTTGTTGGGTATTTCATGGTATGCCTATCAAGAACACAGTTTCTTGGACTGCTTTGATATCAGGTTTTGTACAAAGTGGGCGTGGTAATGATGCTTTGGATCTTTTCCAGAAAATGCTGGAAGAGAGGATCCCGCCTAGCTCAGTTACATATGTTAGCATTTTGAGTGCTTGTGCAGACCTAGCACTTAATGAAAGAGGTAAGCAGATTCATGGGCATATCATTAGAAGTTATAATGGATGTTACTTGTCCAATTTAATTATTTGTAATGCTCTAGTTGACATGTACAGCAAATGCGGAGACATGAGATCGGGAAAAACATTGTTTAAGATGATTTGTGAGAAGGATGTAGTCTCTTGGAACTCTATAATTACTGGATTTGCTCAGAATGGGCTGGGGGAGGAGTCACTTCTTGTTTTTAAGAGGATGGTAGAATCAAATATGAAGCCTACTTATGTGACTTTTCTTTTGGTGTTATCTGCTTGTAGCCACACAGGATTAGTTTCTGAAGGACTTCAAATTCTGCACTTAATGGAAAAGGGTTATGGTATTAAACCTAGGTCAAGTCACTATGCAATTGTGATTGATATGCTTGGGAGGAAAAACAAACTGAAGGAAGCAATGGAGTTGATTGAGAGAGCTCCTAATACATCAGATCATATTGCGATGTGGGGTGCACTTTTGGCTGCTTGTCGAGTCCATGGGAATTTGGCCCTAGCTAGGAAGGCTGCAGAAGCTCTGTTTGAGTTGGAGCCCAACAATGGTGCAAGATATGTTATGTTATCAAACATTTATGCTGCAGCTGGTAGATGGGCTGATGCCCATAGGGTCAGAAGGCTCATGGAAGACAGAGGTTTGACAAAAGAGTCAGCTTATAGTTTGATTGAGATGAGAAATGCAAGGCATGAGTTTGTAGCGAAAGACAAGGTCCACTGTCAGACAGGAGAGATGAATGACATGATTGGTAAATTAGCAGACCATATGAAGGATGTAAGCAATCTTCCTTACATTTACAGCCTTTTGTCTGAGGATAATGGTCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

496

Amino Acids

55.0

Weight (kDa)

7.24

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 23 - 52 2.4e-06 PPR repeat
PPR_2 PF13041 24 - 71 8.1e-06 PPR repeat family
PPR PF01535 27 - 54 1.6e-06 PPR repeat
PPR_2 PF13041 158 - 206 3.6e-13 PPR repeat family
PPR_3 PF13812 159 - 206 1.1e-06 Pentatricopeptide repeat domain
PPR PF01535 161 - 190 1.7e-07 PPR repeat
PPR_2 PF13041 262 - 310 8.2e-09 PPR repeat family
PPR PF01535 265 - 294 4e-07 PPR repeat
E_motif PF20431 381 - 442 2e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 87, 675
AasI GACNNNNNNGTC 1 cut(s) 1306
AatII GACGTC 1 cut(s) 387
AciI CCGC 2 cut(s) 575, 738
AclWI GGATC 3 cut(s) 549, 565, 578
AcsI RAATTY 2 cut(s) 960, 1147
AcuI CTGAAG 2 cut(s) 969, 1073
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 3 cut(s) 14, 513, 728
AfiI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 2 cut(s) 149, 959
AhdI GACNNNNNGTC 1 cut(s) 388
AjiI CACGTC 1 cut(s) 113
AluBI AGCT 6 cut(s) 582, 1082, 1160, 1178, 1244, 1313
AluI AGCT 6 cut(s) 582, 1082, 1160, 1178, 1244, 1313
Alw21I GWGCWC 2 cut(s) 1084, 1120
Alw26I GTCTC 2 cut(s) 735, 799
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 3 cut(s) 549, 565, 578
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 1152
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 4 cut(s) 1127, 1169, 1238, 1241
ApoI RAATTY 2 cut(s) 960, 1147
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
Asp700I GAANNNNTTC 1 cut(s) 954
AspA2I CCTAGG 2 cut(s) 226, 998
AspS9I GGNCC 3 cut(s) 396, 1153, 1369
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 2 cut(s) 396, 1369
AvrII CCTAGG 2 cut(s) 226, 998
BaeGI GKGCMC 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 570
BanII GRGCYC 2 cut(s) 1084, 1197
BarI GAAGNNNNNNTAC 2 cut(s) 1425, 1457
BbsI GAAGAC 1 cut(s) 1293
Bbv12I GWGCWC 2 cut(s) 1084, 1120
BbvI GCAGC 4 cut(s) 1114, 1156, 1225, 1253
BccI CCATC 2 cut(s) 862, 1245
BcoDI GTCTC 2 cut(s) 735, 799
BfaI CTAG 8 cut(s) 227, 374, 579, 623, 716, 999, 1157, 1161
BfmI CTRYAG 2 cut(s) 1170, 1239
BisI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
BlnI CCTAGG 2 cut(s) 226, 998
BlsI GCNGC 4 cut(s) 1129, 1171, 1240, 1243
Bme18I GGWCC 2 cut(s) 396, 1369
BmeRI GACNNNNNGTC 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 396, 1153, 1369
BmiI GGNNCC 2 cut(s) 572, 1194
BmsI GCATC 5 cut(s) 28, 360, 434, 523, 1249
BpiI GAAGAC 1 cut(s) 1293
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 226, 998, 1141
Bsc4I CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
Bse1I ACTGG 2 cut(s) 187, 820
Bse3DI GCAATG 2 cut(s) 246, 1068
BseDI CCNNGG 3 cut(s) 226, 998, 1141
BseGI GGATG 6 cut(s) 375, 442, 686, 793, 873, 1435
BseLI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
BseMI GCAATG 2 cut(s) 246, 1068
BseMII CTCAG 3 cut(s) 597, 839, 1458
BseNI ACTGG 2 cut(s) 187, 820
BseRI GAGGAG 1 cut(s) 857
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 4 cut(s) 1114, 1156, 1225, 1253
BseYI CCCAGC 1 cut(s) 835
BsgI GTGCAG 2 cut(s) 636, 950
BshFI GGCC 1 cut(s) 1154
BsiHKAI GWGCWC 2 cut(s) 1084, 1120
BsiHKCI CYCGRG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
BsmAI GTCTC 2 cut(s) 735, 799
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 1 cut(s) 1154
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 1084, 1120, 1197
Bsp1407I TGTACA 2 cut(s) 511, 726
Bsp143I GATC 4 cut(s) 541, 570, 749, 1096
Bsp19I CCATGG 1 cut(s) 1141
BspACI CCGC 2 cut(s) 575, 738
BspANI GGCC 1 cut(s) 1154
BspCNI CTCAG 3 cut(s) 596, 838, 1459
BspLI GGNNCC 2 cut(s) 572, 1194
BspMAI CTGCAG 2 cut(s) 1174, 1243
BspPI GGATC 3 cut(s) 549, 565, 578
BsrDI GCAATG 2 cut(s) 246, 1068
BsrGI TGTACA 2 cut(s) 511, 726
BsrI ACTGG 2 cut(s) 187, 820
BssECI CCNNGG 3 cut(s) 226, 998, 1141
BssMI GATC 4 cut(s) 541, 570, 749, 1096
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 3 cut(s) 226, 998, 1141
Bst4CI ACNGT 2 cut(s) 481, 1376
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 384
BstAUI TGTACA 2 cut(s) 511, 726
BstC8I GCNNGC 3 cut(s) 43, 54, 301
BstDEI CTNAG 3 cut(s) 583, 825, 1467
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 6 cut(s) 375, 442, 686, 793, 873, 1435
BstKTI GATC 4 cut(s) 544, 573, 752, 1099
BstMAI GTCTC 2 cut(s) 735, 799
BstMBI GATC 4 cut(s) 541, 570, 749, 1096
BstMWI GCNNNNNNNGC 5 cut(s) 416, 623, 1124, 1166, 1175
BstNSI RCATGY 1 cut(s) 727
BstSFI CTRYAG 2 cut(s) 1170, 1239
BstSLI GKGCMC 1 cut(s) 1120
BstV1I GCAGC 4 cut(s) 1114, 1156, 1225, 1253
BstV2I GAAGAC 1 cut(s) 1293
BstX2I RGATCY 2 cut(s) 541, 570
BstYI RGATCY 2 cut(s) 541, 570
BsuRI GGCC 1 cut(s) 1154
BtgI CCRYGG 1 cut(s) 1141
BtgZI GCGATG 1 cut(s) 1121
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 6 cut(s) 375, 442, 686, 793, 873, 1435
BtsIMutI CAGTG 1 cut(s) 1372
Cac8I GCNNGC 3 cut(s) 43, 54, 301
Cfr13I GGNCC 3 cut(s) 396, 1153, 1369
CseI GACGC 2 cut(s) 236, 449
Csp6I GTAC 3 cut(s) 13, 512, 727
CviQI GTAC 3 cut(s) 13, 512, 727
DdeI CTNAG 3 cut(s) 583, 825, 1467
DpnI GATC 4 cut(s) 543, 572, 751, 1098
DpnII GATC 4 cut(s) 541, 570, 749, 1096
DrdI GACNNNNNNGTC 1 cut(s) 1306
DriI GACNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 1306
Eam1104I CTCTTC 1 cut(s) 558
Eam1105I GACNNNNNGTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 558
Ecl136II GAGCTC 1 cut(s) 1082
Eco130I CCWWGG 3 cut(s) 226, 998, 1141
Eco24I GRGCYC 2 cut(s) 1084, 1197
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 396, 1369
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 969, 1073
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 1082
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 3 cut(s) 226, 998, 1141
EcoT38I GRGCYC 2 cut(s) 1084, 1197
ErhI CCWWGG 3 cut(s) 226, 998, 1141
FaqI GGGAC 1 cut(s) 395
FauI CCCGC 1 cut(s) 582
FauNDI CATATG 2 cut(s) 592, 1422
Fnu4HI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
FokI GGATG 6 cut(s) 382, 449, 693, 800, 880, 1442
FriOI GRGCYC 2 cut(s) 1084, 1197
Fsp4HI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
FspBI CTAG 8 cut(s) 227, 374, 579, 623, 716, 999, 1157, 1161
GluI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
GsaI CCCAGC 1 cut(s) 839
HaeIII GGCC 1 cut(s) 1154
HgaI GACGC 2 cut(s) 236, 449
Hin1I GRCGYC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 6 cut(s) 131, 649, 845, 875, 1137, 1307
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 5 cut(s) 192, 338, 721, 1118, 1372
Hpy188I TCNGA 7 cut(s) 369, 828, 949, 1096, 1274, 1380, 1468
Hpy188III TCNNGA 6 cut(s) 18, 429, 472, 550, 753, 1485
Hpy8I GTNNAC 5 cut(s) 192, 338, 721, 1118, 1372
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 6 cut(s) 778, 944, 1048, 1159, 1269, 1420
HpyCH4III ACNGT 2 cut(s) 481, 1376
HpyCH4IV ACGT 4 cut(s) 92, 112, 194, 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 623, 1124, 1166, 1175
HpyF3I CTNAG 3 cut(s) 583, 825, 1467
HpySE526I ACGT 4 cut(s) 92, 112, 194, 384
Hsp92I GRCGYC 1 cut(s) 384
Kzo9I GATC 4 cut(s) 541, 570, 749, 1096
LmnI GCTCC 2 cut(s) 1087, 1192
Lsp1109I GCAGC 4 cut(s) 1114, 1156, 1225, 1253
LweI GCATC 5 cut(s) 28, 360, 434, 523, 1249
MaeI CTAG 8 cut(s) 227, 374, 579, 623, 716, 999, 1157, 1161
MaeII ACGT 4 cut(s) 92, 112, 194, 384
MaeIII GTNAC 5 cut(s) 586, 683, 846, 898, 1007
MalI GATC 4 cut(s) 543, 572, 751, 1098
MboI GATC 4 cut(s) 541, 570, 749, 1096
MboII GAAGA 3 cut(s) 575, 1298, 1433
MfeI CAATTG 2 cut(s) 273, 1017
MflI RGATCY 2 cut(s) 541, 570
MhlI GDGCHC 3 cut(s) 1084, 1120, 1197
MlyI GAGTC 3 cut(s) 854, 1146, 1316
MmeI TCCRAC 3 cut(s) 190, 347, 1170
MroXI GAANNNNTTC 1 cut(s) 954
MseI TTAA 6 cut(s) 630, 698, 768, 861, 971, 993
MspA1I CMGCKG 1 cut(s) 1244
MunI CAATTG 2 cut(s) 273, 1017
Mva1269I GAATGC 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 416, 623, 1124, 1166, 1175
NcoI CCATGG 1 cut(s) 1141
NdeI CATATG 2 cut(s) 592, 1422
NdeII GATC 4 cut(s) 541, 570, 749, 1096
NlaIV GGNNCC 2 cut(s) 572, 1194
NmuCI GTSAC 3 cut(s) 846, 898, 1007
NspI RCATGY 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 16
PciI ACATGT 1 cut(s) 723
PctI GAATGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 954
PfeI GAWTC 3 cut(s) 131, 649, 875
PflFI GACNNNGTC 1 cut(s) 1367
PkrI GCNGC 4 cut(s) 1129, 1171, 1240, 1243
PleI GAGTC 3 cut(s) 853, 1145, 1315
PpsI GAGTC 3 cut(s) 853, 1145, 1315
PscI ACATGT 1 cut(s) 723
PsiI TTATAA 2 cut(s) 87, 675
Psp124BI GAGCTC 1 cut(s) 1084
PspFI CCCAGC 1 cut(s) 835
PspN4I GGNNCC 2 cut(s) 572, 1194
PspPI GGNCC 3 cut(s) 396, 1153, 1369
PstI CTGCAG 2 cut(s) 1174, 1243
PsuI RGATCY 2 cut(s) 541, 570
PsyI GACNNNGTC 1 cut(s) 1367
PvuII CAGCTG 1 cut(s) 1244
RsaI GTAC 3 cut(s) 14, 513, 728
RsaNI GTAC 3 cut(s) 13, 512, 727
SacI GAGCTC 1 cut(s) 1084
SaqAI TTAA 6 cut(s) 630, 698, 768, 861, 971, 993
SatI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
Sau3AI GATC 4 cut(s) 541, 570, 749, 1096
Sau96I GGNCC 3 cut(s) 396, 1153, 1369
SchI GAGTC 3 cut(s) 854, 1146, 1316
SduI GDGCHC 3 cut(s) 1084, 1120, 1197
SfaNI GCATC 5 cut(s) 28, 360, 434, 523, 1249
SfcI CTRYAG 2 cut(s) 1170, 1239
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 2 cut(s) 396, 1369
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SsiI CCGC 2 cut(s) 575, 738
SspMI CTAG 8 cut(s) 227, 374, 579, 623, 716, 999, 1157, 1161
SstI GAGCTC 1 cut(s) 1084
StyI CCWWGG 3 cut(s) 226, 998, 1141
TaaI ACNGT 2 cut(s) 481, 1376
TaiI ACGT 4 cut(s) 95, 115, 197, 387
TaqI TCGA 2 cut(s) 17, 1135
TatI WGTACW 3 cut(s) 12, 511, 726
TfiI GAWTC 3 cut(s) 131, 649, 875
Tru1I TTAA 6 cut(s) 630, 698, 768, 861, 971, 993
Tru9I TTAA 6 cut(s) 630, 698, 768, 861, 971, 993
TscAI CASTG 1 cut(s) 1379
TseFI GTSAC 3 cut(s) 846, 898, 1007
TseI GCWGC 4 cut(s) 1127, 1169, 1238, 1241
Tsp45I GTSAC 3 cut(s) 846, 898, 1007
TspDTI ATGAA 8 cut(s) 245, 302, 446, 641, 648, 899, 1406, 1439
TspRI CASTG 1 cut(s) 1379
Tth111I GACNNNGTC 1 cut(s) 1367
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 396, 1369
XapI RAATTY 2 cut(s) 960, 1147
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 1 cut(s) 16
XmaJI CCTAGG 2 cut(s) 226, 998
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 8 cut(s) 227, 374, 579, 623, 716, 999, 1157, 1161
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.