Rh2DG335200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014768
Physical Location & Seq
Reverse (-)
43097650 .. 43103467
5818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG335200.1

Sequence Viewer

Length: 1488 bp
ATGATATCCATGTACTCGAGAAATGGCAGTTTTGACAATGCACGCCATTTGCTTGCTAAAATGACAGAACCAAATCTTGTGAGCTATAATACTTTGGTTTCTGGTTTAGCACATCATGGGTATCATAAAGAATCCATATCTCTCTTCCAAAGGATGCAACAGGATTGTGAATGTTTATTCTTGGACCAGTTCACGTTTGTAAGCATAGTGGGGACTTGTGCTTGCTTAGGTGCATTGGCAATGTTGCGTCAAGTTCATGGGGTGGCGATTGCAATTGGCTTGGAAATGAATATCATTGCTTGCAATTCTTTGGTCAATGCTTATGGAAAATGTGGTGAACCAGACGCCTCATATTCTGTATTCAGTCGAATGCTAGAGAGGGACGTTGTGTCTTGGACCTCAATGATTGCTTCTTATGCACGGGCATCAAGAATGGATGACGCTTGTTGGGTATTTCATGGTATGCCTCTTAAGAACACAGTTTCTTGGACTGCTTTGATTTCGGGTTTTGTACAAAGTGGGCATGGTAATTATGCTTTGGATCTTTTCCAGAAAATGCTGGGAGAGAGGATCCGGCCTAGCACAGTTACATATGTTAGCATTTTGAGTGCTTGTGCAGATCTAGCACTTAATGAAAGAGGTAAGCAGATTCATGGGCATATCATTAGAAGTAATAATGGAAGCTACTTGTCCAATGTATTTATTTGTAATGCTCTAGTTGACATGTACAGCAAATGTGGGGACATGAAATGGGGAAAAACATTGTTTGAGATGATTCCTGAGAAGGATGTAATCTCTTGGAACTCTTTAATTACTGGATTTGCTCAGAATGGGCTGGGGAAGGAGTCACTTCTTGTTTTTAAGAGGATGGTAGAAACAAATGTGAAGCCTACTCATGTGACTTTTCTTTTGGTGTTATCTGCTTGTAGCCACACGGGTTTAGTTTCTGAAGGACTTCAAATTCTGCACTTAATGGAAAAGGGTTATGATATTAAACCTAGATCAAGTCACTATGCAATTGTGATTGATATGCTCGGGAGGAAAAATAAACTGAAGGAAGCAATGGAGTTGATTGAGAGAGCTCCTCATGCATCAGATCATATTGGGATGTGGGGTGCACTTTTGGCTGCTTGTCGAGTCCATGGGAACTTGGCCTTAGCTAGGAGGGCTGCAGAAGCTCTTTTTGATTTGGAGCCCCACAATGGTGCAAGATATGTTATGTTATCAAACATTTATGCCGCAGCTGGTGGATGGGCTGATGCCCATAAGGTGAGAAGGCTCATGGAAGAAAGAGGTTTGACAAAAGAGTCAGCTTATAGTTTGATAGAGCTGAGAAATGCAAGGCATGAGTTTGTAGCGAAAGACAAGGTACACTGTCAGACAGGAGAGATGAATGATACGATTGGTAAATTAGCAGACCATATGAAGGATGTAGGCAACCTTCCTTACATTTACAGCCTTTTGTCCGAGGATAATGGTTATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

495

Amino Acids

55.01

Weight (kDa)

7.62

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 27 - 54 2.8e-06 PPR repeat
PPR_2 PF13041 158 - 206 5.3e-11 PPR repeat family
PPR_3 PF13812 159 - 206 2.8e-06 Pentatricopeptide repeat domain
PPR PF01535 161 - 190 9.3e-06 PPR repeat
PPR_2 PF13041 262 - 310 5.2e-09 PPR repeat family
PPR_3 PF13812 263 - 309 9.9e-06 Pentatricopeptide repeat domain
PPR PF01535 265 - 292 2.6e-06 PPR repeat
E_motif PF20431 381 - 442 3.9e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1306
AciI CCGC 1 cut(s) 1239
AclWI GGATC 3 cut(s) 549, 565, 578
AcsI RAATTY 1 cut(s) 960
AcuI CTGAAG 2 cut(s) 969, 1073
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 4 cut(s) 14, 513, 728, 1371
AfiI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
AflII CTTAAG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 1 cut(s) 959
AhdI GACNNNNNGTC 1 cut(s) 388
AleI CACNNNNGTG 1 cut(s) 1203
AluBI AGCT 8 cut(s) 84, 684, 1082, 1160, 1178, 1244, 1313, 1330
AluI AGCT 8 cut(s) 84, 684, 1082, 1160, 1178, 1244, 1313, 1330
Alw21I GWGCWC 2 cut(s) 1084, 1120
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 3 cut(s) 549, 565, 578
Ama87I CYCGRG 2 cut(s) 16, 1034
AoxI GGCC 2 cut(s) 575, 1152
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 3 cut(s) 1127, 1169, 1241
ApoI RAATTY 1 cut(s) 960
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
Asp700I GAANNNNTTC 1 cut(s) 954
AspS9I GGNCC 2 cut(s) 184, 396
AsuHPI GGTGA 2 cut(s) 347, 1282
AvaI CYCGRG 2 cut(s) 16, 1034
AvaII GGWCC 2 cut(s) 184, 396
BaeGI GKGCMC 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 570
BanII GRGCYC 2 cut(s) 1084, 1197
BarI GAAGNNNNNNTAC 2 cut(s) 1425, 1457
Bbv12I GWGCWC 2 cut(s) 1084, 1120
BbvI GCAGC 3 cut(s) 1114, 1156, 1253
BccI CCATC 2 cut(s) 862, 1245
BfaI CTAG 6 cut(s) 374, 579, 623, 716, 999, 1161
BfmI CTRYAG 1 cut(s) 1170
BfrI CTTAAG 1 cut(s) 470
BglII AGATCT 1 cut(s) 619
BisI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
BlsI GCNGC 4 cut(s) 1129, 1171, 1240, 1243
Bme18I GGWCC 2 cut(s) 184, 396
BmeRI GACNNNNNGTC 1 cut(s) 388
BmeT110I CYCGRG 2 cut(s) 16, 1034
BmgT120I GGNCC 2 cut(s) 184, 396
BmiI GGNNCC 2 cut(s) 572, 1194
BmsI GCATC 4 cut(s) 144, 434, 1100, 1249
BplI GAGNNNNNCTC 2 cut(s) 1069, 1101
Bpu10I CCTNAGC 2 cut(s) 226, 1156
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 1141, 1467
Bsc4I CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
Bse1I ACTGG 2 cut(s) 187, 820
Bse3DI GCAATG 3 cut(s) 246, 294, 1068
BseDI CCNNGG 2 cut(s) 1141, 1467
BseGI GGATG 7 cut(s) 159, 442, 793, 873, 1113, 1256, 1435
BseLI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
BseMI GCAATG 3 cut(s) 246, 294, 1068
BseMII CTCAG 3 cut(s) 771, 839, 1322
BseNI ACTGG 2 cut(s) 187, 820
BseRI GAGGAG 1 cut(s) 1074
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 3 cut(s) 1114, 1156, 1253
BseYI CCCAGC 2 cut(s) 559, 835
BsgI GTGCAG 2 cut(s) 636, 950
BshFI GGCC 2 cut(s) 577, 1154
BsiHKAI GWGCWC 2 cut(s) 1084, 1120
BsiHKCI CYCGRG 2 cut(s) 16, 1034
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 3 cut(s) 226, 395, 755
BslI CCNNNNNNNGG 3 cut(s) 1161, 1202, 1426
BsmFI GGGAC 3 cut(s) 226, 395, 755
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 2 cut(s) 577, 1154
BsoBI CYCGRG 2 cut(s) 16, 1034
Bsp1286I GDGCHC 3 cut(s) 1084, 1120, 1197
Bsp1407I TGTACA 2 cut(s) 511, 726
Bsp143I GATC 5 cut(s) 541, 570, 619, 1001, 1096
Bsp19I CCATGG 1 cut(s) 1141
BspACI CCGC 1 cut(s) 1239
BspANI GGCC 2 cut(s) 577, 1154
BspCNI CTCAG 3 cut(s) 772, 838, 1323
BspLI GGNNCC 2 cut(s) 572, 1194
BspMAI CTGCAG 1 cut(s) 1174
BspPI GGATC 3 cut(s) 549, 565, 578
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 3 cut(s) 246, 294, 1068
BsrGI TGTACA 2 cut(s) 511, 726
BsrI ACTGG 2 cut(s) 187, 820
BssECI CCNNGG 2 cut(s) 1141, 1467
BssMI GATC 5 cut(s) 541, 570, 619, 1001, 1096
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 1141
Bst4CI ACNGT 3 cut(s) 481, 586, 1376
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 345
BstAFI CTTAAG 1 cut(s) 470
BstAUI TGTACA 2 cut(s) 511, 726
BstC8I GCNNGC 4 cut(s) 43, 54, 223, 301
BstDEI CTNAG 5 cut(s) 226, 780, 825, 1156, 1331
BstDSI CCRYGG 1 cut(s) 1141
BstENI CCTNNNNNAGG 1 cut(s) 1159
BstF5I GGATG 7 cut(s) 159, 442, 793, 873, 1113, 1256, 1435
BstKTI GATC 5 cut(s) 544, 573, 622, 1004, 1099
BstMBI GATC 5 cut(s) 541, 570, 619, 1001, 1096
BstMWI GCNNNNNNNGC 6 cut(s) 416, 623, 1088, 1124, 1166, 1175
BstNSI RCATGY 1 cut(s) 727
BstSFI CTRYAG 1 cut(s) 1170
BstSLI GKGCMC 1 cut(s) 1120
BstV1I GCAGC 3 cut(s) 1114, 1156, 1253
BstX2I RGATCY 3 cut(s) 541, 570, 619
BstYI RGATCY 3 cut(s) 541, 570, 619
BsuRI GGCC 2 cut(s) 577, 1154
BtgI CCRYGG 1 cut(s) 1141
BtsCI GGATG 7 cut(s) 159, 442, 793, 873, 1113, 1256, 1435
BtsIMutI CAGTG 1 cut(s) 1372
Cac8I GCNNGC 4 cut(s) 43, 54, 223, 301
Cfr13I GGNCC 2 cut(s) 184, 396
CseI GACGC 3 cut(s) 236, 353, 449
Csp6I GTAC 4 cut(s) 13, 512, 727, 1370
CviQI GTAC 4 cut(s) 13, 512, 727, 1370
DdeI CTNAG 5 cut(s) 226, 780, 825, 1156, 1331
DpnI GATC 5 cut(s) 543, 572, 621, 1003, 1098
DpnII GATC 5 cut(s) 541, 570, 619, 1001, 1096
DrdI GACNNNNNNGTC 1 cut(s) 1306
DriI GACNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 1306
Eam1104I CTCTTC 1 cut(s) 149
Eam1105I GACNNNNNGTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 1082
Eco130I CCWWGG 1 cut(s) 1141
Eco24I GRGCYC 2 cut(s) 1084, 1197
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 184, 396
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 969, 1073
Eco88I CYCGRG 2 cut(s) 16, 1034
EcoICRI GAGCTC 1 cut(s) 1082
EcoNI CCTNNNNNAGG 1 cut(s) 1159
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 1141
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 2 cut(s) 1084, 1197
ErhI CCWWGG 1 cut(s) 1141
FaqI GGGAC 3 cut(s) 226, 395, 755
FauNDI CATATG 2 cut(s) 592, 1422
Fnu4HI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
FokI GGATG 7 cut(s) 166, 449, 800, 880, 1120, 1263, 1442
FriOI GRGCYC 2 cut(s) 1084, 1197
Fsp4HI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
FspBI CTAG 6 cut(s) 374, 579, 623, 716, 999, 1161
GluI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
GsaI CCCAGC 2 cut(s) 563, 839
HaeIII GGCC 2 cut(s) 577, 1154
HapII CCGG 1 cut(s) 574
HgaI GACGC 3 cut(s) 236, 353, 449
Hin1I GRCGYC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 6 cut(s) 131, 649, 775, 845, 1137, 1307
HpaII CCGG 1 cut(s) 574
HphI GGTGA 2 cut(s) 347, 1282
Hpy166II GTNNAC 5 cut(s) 192, 338, 721, 1118, 1372
Hpy188I TCNGA 5 cut(s) 828, 949, 1096, 1380, 1468
Hpy188III TCNNGA 6 cut(s) 18, 429, 550, 779, 1036, 1485
Hpy8I GTNNAC 5 cut(s) 192, 338, 721, 1118, 1372
HpyAV CCTTC 7 cut(s) 778, 835, 944, 1048, 1269, 1420, 1451
HpyCH4III ACNGT 3 cut(s) 481, 586, 1376
HpyCH4IV ACGT 2 cut(s) 194, 384
HpyF10VI GCNNNNNNNGC 6 cut(s) 416, 623, 1088, 1124, 1166, 1175
HpyF3I CTNAG 5 cut(s) 226, 780, 825, 1156, 1331
HpySE526I ACGT 2 cut(s) 194, 384
Hsp92I GRCGYC 1 cut(s) 345
Kzo9I GATC 5 cut(s) 541, 570, 619, 1001, 1096
LmnI GCTCC 2 cut(s) 1087, 1192
Lsp1109I GCAGC 3 cut(s) 1114, 1156, 1253
LweI GCATC 4 cut(s) 144, 434, 1100, 1249
MaeI CTAG 6 cut(s) 374, 579, 623, 716, 999, 1161
MaeII ACGT 2 cut(s) 194, 384
MaeIII GTNAC 4 cut(s) 586, 846, 898, 1007
MalI GATC 5 cut(s) 543, 572, 621, 1003, 1098
MboI GATC 5 cut(s) 541, 570, 619, 1001, 1096
MboII GAAGA 2 cut(s) 136, 1298
MfeI CAATTG 2 cut(s) 273, 1017
MflI RGATCY 3 cut(s) 541, 570, 619
MhlI GDGCHC 3 cut(s) 1084, 1120, 1197
MluCI AATT 7 cut(s) 273, 304, 529, 810, 960, 1017, 1409
MlyI GAGTC 3 cut(s) 854, 1146, 1316
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 1 cut(s) 954
MseI TTAA 6 cut(s) 471, 630, 809, 861, 971, 993
MslI CAYNNNNRTG 1 cut(s) 1203
MspA1I CMGCKG 1 cut(s) 1244
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 574
MunI CAATTG 2 cut(s) 273, 1017
Mva1269I GAATGC 1 cut(s) 375
MwoI GCNNNNNNNGC 6 cut(s) 416, 623, 1088, 1124, 1166, 1175
NcoI CCATGG 1 cut(s) 1141
NdeI CATATG 2 cut(s) 592, 1422
NdeII GATC 5 cut(s) 541, 570, 619, 1001, 1096
NlaIV GGNNCC 2 cut(s) 572, 1194
NmuCI GTSAC 3 cut(s) 846, 898, 1007
NsiI ATGCAT 1 cut(s) 1093
NspI RCATGY 1 cut(s) 727
OliI CACNNNNGTG 1 cut(s) 1203
PaeR7I CTCGAG 1 cut(s) 16
PciI ACATGT 1 cut(s) 723
PctI GAATGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 954
PfeI GAWTC 3 cut(s) 131, 649, 775
PkrI GCNGC 4 cut(s) 1129, 1171, 1240, 1243
PleI GAGTC 3 cut(s) 853, 1145, 1315
PpsI GAGTC 3 cut(s) 853, 1145, 1315
PscI ACATGT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 1084
PspFI CCCAGC 2 cut(s) 559, 835
PspN4I GGNNCC 2 cut(s) 572, 1194
PspPI GGNCC 2 cut(s) 184, 396
PstI CTGCAG 1 cut(s) 1174
PsuI RGATCY 3 cut(s) 541, 570, 619
PvuII CAGCTG 1 cut(s) 1244
RsaI GTAC 4 cut(s) 14, 513, 728, 1371
RsaNI GTAC 4 cut(s) 13, 512, 727, 1370
RseI CAYNNNNRTG 1 cut(s) 1203
SacI GAGCTC 1 cut(s) 1084
SaqAI TTAA 6 cut(s) 471, 630, 809, 861, 971, 993
SatI GCNGC 4 cut(s) 1128, 1170, 1239, 1242
Sau3AI GATC 5 cut(s) 541, 570, 619, 1001, 1096
Sau96I GGNCC 2 cut(s) 184, 396
SchI GAGTC 3 cut(s) 854, 1146, 1316
SduI GDGCHC 3 cut(s) 1084, 1120, 1197
SfaNI GCATC 4 cut(s) 144, 434, 1100, 1249
SfcI CTRYAG 1 cut(s) 1170
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 2 cut(s) 184, 396
SlaI CTCGAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 1203
SmlI CTYRAG 2 cut(s) 16, 470
SmoI CTYRAG 2 cut(s) 16, 470
Sse9I AATT 7 cut(s) 273, 304, 529, 810, 960, 1017, 1409
SsiI CCGC 1 cut(s) 1239
SspMI CTAG 6 cut(s) 374, 579, 623, 716, 999, 1161
SstI GAGCTC 1 cut(s) 1084
StyI CCWWGG 1 cut(s) 1141
TaaI ACNGT 3 cut(s) 481, 586, 1376
TaiI ACGT 2 cut(s) 197, 387
TaqI TCGA 3 cut(s) 17, 367, 1135
TasI AATT 7 cut(s) 273, 304, 529, 810, 960, 1017, 1409
TatI WGTACW 3 cut(s) 12, 511, 726
TauI GCSGC 1 cut(s) 1241
TfiI GAWTC 3 cut(s) 131, 649, 775
Tru1I TTAA 6 cut(s) 471, 630, 809, 861, 971, 993
Tru9I TTAA 6 cut(s) 471, 630, 809, 861, 971, 993
TscAI CASTG 1 cut(s) 1379
TseFI GTSAC 3 cut(s) 846, 898, 1007
TseI GCWGC 3 cut(s) 1127, 1169, 1241
Tsp45I GTSAC 3 cut(s) 846, 898, 1007
TspDTI ATGAA 8 cut(s) 245, 302, 446, 641, 648, 761, 1406, 1439
TspRI CASTG 1 cut(s) 1379
Vha464I CTTAAG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 184, 396
XagI CCTNNNNNAGG 1 cut(s) 1159
XapI RAATTY 1 cut(s) 960
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 6 cut(s) 374, 579, 623, 716, 999, 1161
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.