Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016532

Physical Location & Seq

Genomic Coordinates Reverse (-)

20912009 .. 20915724

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGAATAGCAATCTCCCTCGACGAATCATCAAGGAGACGCAGAGGCTGCTCAGCGAACCAGCTCCGGGAATTAGTGCTTCTCCTTCAGAAGAAAACATGCGCTACTTTAATGTAATGATTCTTGGTCCAGCTCAGTCTCCATATGAAGGTGGGGTTTTCAAGTTGGAGTTGTTTTTGCCTGAAGAATATCCAATGGCACCTCCCAAGGTTCGCTTCCTGACCAAAATATATCATCCTAACATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAAGACAAATGGAGCCCAGCCCTCCAAATCCGAACAGTATTGCTGAGCATCCAAGCACTTCTGAGTGCTCCAAACCCTGATGACCCACTTTCTGAGAACATTGCAAAGCACTGGAAGTCAAATGAAACCGAAGCTGTTGAGACAGCCAAGGAGTGGACCCGCTTATATGGAAGTGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022622 GO:0030154 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

6.16

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 145	1.8e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G16890
fragaria_vesca	FvH4_6g27280
malus_domestica	MD17G1231200.v1.1
prunus_persica	Prupe.3G121300_v2.0.a1
pyrus_communis	pycom17g23440
rosa_chinensis	RchiOBHm_Chr2g0129381
rosa_multiflora	Rmu_sc0001171.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114660
rosa_rugosa	Rorug02G0286200
rosa_samantha	Rh2BG346500 Rh2CG325900 Rh2DG364300
rosa_wichuraiana	Rw2G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	72, 204
AfiI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
AgsI	TTSAA	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	65, 134, 253, 413
AluI	AGCT	4 cut(s)	65, 134, 253, 413
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	32, 144, 413
AlwNI	CAGNNNCTG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	128, 435
AsuC2I	CCSGG	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	128, 435
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	32, 144, 413
BisI	GCNGC	1 cut(s)	50
BlpI	GCTNAGC	2 cut(s)	53, 323
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	128, 435
BmgT120I	GGNCC	2 cut(s)	128, 435
BmiI	GGNNCC	3 cut(s)	201, 293, 437
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	336
Bpu1102I	GCTNAGC	2 cut(s)	53, 323
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	207, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 149, 432
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	207, 426
BseGI	GGATG	2 cut(s)	235, 327
BseLI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	5 cut(s)	67, 149, 314, 332, 363
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BsmAI	GTCTC	3 cut(s)	32, 144, 413
BsmBI	CGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	296, 349
Bsp1720I	GCTNAGC	2 cut(s)	53, 323
BspACI	CCGC	1 cut(s)	439
BspCNI	CTCAG	5 cut(s)	66, 148, 315, 333, 364
BspLI	GGNNCC	3 cut(s)	201, 293, 437
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	207, 426
BssT1I	CCWWGG	2 cut(s)	207, 426
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	53, 135, 323, 341, 372
BstF5I	GGATG	2 cut(s)	235, 327
BstHHI	GCGC	1 cut(s)	105
BstMAI	GTCTC	3 cut(s)	32, 144, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	235, 327
BtsIMutI	CAGTG	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	128, 435
CseI	GACGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	49, 65, 134, 253, 294, 299, 413, 425
CviKI_1	RGCY	8 cut(s)	49, 65, 134, 253, 294, 299, 413, 425
DdeI	CTNAG	5 cut(s)	53, 135, 323, 341, 372
Eco130I	CCWWGG	2 cut(s)	207, 426
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	128, 435
Eco57I	CTGAAG	2 cut(s)	72, 204
EcoT14I	CCWWGG	2 cut(s)	207, 426
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	207, 426
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	103
FaiI	YATR	7 cut(s)	101, 145, 147, 232, 265, 445, 447
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	2 cut(s)	222, 314
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	50
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	299
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	27, 121
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	5 cut(s)	91, 279, 311, 342, 373
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	96, 143
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	5 cut(s)	53, 135, 323, 341, 372
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	70, 291, 352
LpnPI	CCDG	8 cut(s)	75, 81, 144, 195, 233, 309, 369, 376
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	336
MboII	GAAGA	2 cut(s)	104, 197
MhlI	GDGCHC	2 cut(s)	296, 349
MluCI	AATT	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	30, 39, 213, 252, 311
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	201, 293, 437
NspI	RCATGY	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	27, 121
PflMI	CCANNNNNTGG	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	201, 293, 437
PspPI	GGNCC	2 cut(s)	128, 435
PstNI	CAGNNNCTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	50
Sau96I	GGNCC	2 cut(s)	128, 435
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	296, 349
SetI	ASST	7 cut(s)	67, 136, 154, 205, 213, 255, 415
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	2 cut(s)	128, 435
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	207, 426
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	27, 121
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	162, 417
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	128, 435
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.