Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016532

Physical Location & Seq

Genomic Coordinates Forward (+)

27951017 .. 27955090

Gene Structure 4074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1231200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCAACAGTAATCTTCCGAGACGAATTATCAAGGAGACGCAGAGGCTTCTCAGCGAACCAGCTCCTGGAATCAGCGCTTCTCCTGCAGAAGAAAACATGCGATATTTCAACGTAATGATTCTTGGCCCAGCTCAATCTCCATATGAAGGTGGGGTTTTCAAGTTGGAATTGTTTTTGCCTGAAGAATATCCAATGGCACCTCCAAAGGTCCGTTTCCTGACAAAAATATATCATCCTAACATTGACAAGCTTGGGAGGATATGCCTCGATATTCTGAAAGACAAATGGAGTCCAGCCCTTCAAATCCGAACAGTATTGCTGAGCATTCAAGCACTTCTGAGTGCTCCAAATCCTGATGATCCGCTTTCTGAGAACATTGCAAAGCACTGGAAGACAAATGAAGAAGAAGCTGTTGAGACAGCAAAGGAGTGGACCCGTTTGTATGCGAGTGGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022622 GO:0030154 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

154

Amino Acids

17.33

Weight (kDa)

5.78

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 145	1.3e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G16890
fragaria_vesca	FvH4_6g27280
malus_domestica	MD17G1231200.v1.1
prunus_persica	Prupe.3G121300_v2.0.a1
pyrus_communis	pycom17g23440
rosa_chinensis	RchiOBHm_Chr2g0129381
rosa_multiflora	Rmu_sc0001171.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114660
rosa_rugosa	Rorug02G0286200
rosa_samantha	Rh2BG346500 Rh2CG325900 Rh2DG364300
rosa_wichuraiana	Rw2G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	204
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	68, 149
AgsI	TTSAA	4 cut(s)	112, 163, 305, 332
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	65, 134, 253, 413
AluI	AGCT	4 cut(s)	65, 134, 253, 413
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	16, 32, 413
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	68
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	2 cut(s)	3, 127
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	128, 211, 435
AvaII	GGWCC	2 cut(s)	211, 435
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	16, 32, 413
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	211, 435
BmgT120I	GGNCC	3 cut(s)	128, 211, 435
BmiI	GGNNCC	2 cut(s)	201, 437
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 149
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	68, 149
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	4 cut(s)	67, 314, 332, 363
BseNI	ACTGG	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	5, 129
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	68, 149
BsmAI	GTCTC	3 cut(s)	16, 32, 413
BsmBI	CGTCTC	2 cut(s)	16, 32
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	5, 129
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	2 cut(s)	5, 129
BspCNI	CTCAG	4 cut(s)	66, 315, 333, 364
BspLI	GGNNCC	2 cut(s)	201, 437
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	11, 316
BstDEI	CTNAG	4 cut(s)	53, 323, 341, 372
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	3 cut(s)	16, 32, 413
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	5, 129
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	128, 211, 435
CseI	GACGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	5, 49, 65, 129, 134, 253, 299, 413
CviKI_1	RGCY	8 cut(s)	5, 49, 65, 129, 134, 253, 299, 413
DdeI	CTNAG	4 cut(s)	53, 323, 341, 372
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	211, 435
Eco47III	AGCGCT	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	67
Esp3I	CGTCTC	2 cut(s)	16, 32
FaeI	CATG	1 cut(s)	103
FaiI	YATR	6 cut(s)	101, 145, 147, 232, 265, 447
FatI	CATG	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	5, 129
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	72, 121, 292
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	5 cut(s)	21, 279, 311, 342, 373
Hpy188III	TCNNGA	2 cut(s)	220, 356
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	143, 311
HpyCH4III	ACNGT	2 cut(s)	11, 316
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	89, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	53, 323, 341, 372
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	70, 352
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	6 cut(s)	8, 104, 197, 406, 416, 419
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	27, 170
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	39, 213, 252, 278
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	201, 437
NspI	RCATGY	1 cut(s)	103
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	72, 121
PflMI	CCANNNNNTGG	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	67
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	201, 437
PspPI	GGNCC	3 cut(s)	128, 211, 435
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	3 cut(s)	128, 211, 435
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	8 cut(s)	67, 117, 136, 154, 205, 213, 255, 415
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	211, 435
Sse9I	AATT	2 cut(s)	27, 170
SsiI	CCGC	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	11, 316
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	27, 170
TfiI	GAWTC	2 cut(s)	72, 121
TscAI	CASTG	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	162, 417
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	211, 435
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.