Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016532

Physical Location & Seq

Genomic Coordinates Forward (+)

40832432 .. 40836106

Gene Structure 3675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGAATAGCAATCTCCCTCGACGAATTATCAAGGAGACGCAGAGGCTTCTCAGCGAACCAGCTCCGGGAATCAGTGCTTCTCCTGCTGAAGAAAACATGCGGTATTTTAATGTAATGATTCTTGGTCCTGCTCAGTCTCCATATGAAGGTGGAGTTTTCAAGTTGGAGTTGTTTTTGCCTGAAGAATATCCAATGGCACCTCCCAAGGTCCGCTTCCTGACCAAAATATATCATCCTAACATTGATAAGCTTGGTAGGATATGCCTTGATATTCTGAAAGACAAATGGAGCCCAGCCCTCCAAATCCGAACAGTATTGCTGAGCGTCCAAGCACTTCTGAGTGCTCCAAACCCTGATGACCCACTTTCCGAGAACATTGCAAAGCACTGGAAGTCAAATGAAACAGAAGCTGTTGACACAGCCAAGGAGTGGACCCGCTTATATGCCAGTGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022622 GO:0030154 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

153

Amino Acids

17.26

Weight (kDa)

6.16

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 145	9.8e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G16890
fragaria_vesca	FvH4_6g27280
malus_domestica	MD17G1231200.v1.1
prunus_persica	Prupe.3G121300_v2.0.a1
pyrus_communis	pycom17g23440
rosa_chinensis	RchiOBHm_Chr2g0129381
rosa_multiflora	Rmu_sc0001171.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114660
rosa_rugosa	Rorug02G0286200
rosa_samantha	Rh2BG346500 Rh2CG325900 Rh2DG364300
rosa_wichuraiana	Rw2G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	3 cut(s)	103, 214, 439
AcuI	CTGAAG	2 cut(s)	111, 204
AfiI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
AgsI	TTSAA	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	65, 253, 413
AluI	AGCT	3 cut(s)	65, 253, 413
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	32, 144
AlwNI	CAGNNNCTG	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	128, 211, 435
AsuC2I	CCSGG	1 cut(s)	69
AvaII	GGWCC	3 cut(s)	128, 211, 435
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	349
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	32, 144
BlpI	GCTNAGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	3 cut(s)	128, 211, 435
BmgT120I	GGNCC	3 cut(s)	128, 211, 435
BmiI	GGNNCC	3 cut(s)	201, 293, 437
BmrFI	CCNGG	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	207, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 149, 432
Bse1I	ACTGG	2 cut(s)	395, 450
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	207, 426
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	4 cut(s)	67, 149, 314, 332
BseNI	ACTGG	2 cut(s)	395, 450
BseYI	CCCAGC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	68, 149, 432
BsmAI	GTCTC	2 cut(s)	32, 144
BsmBI	CGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	296, 349
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	3 cut(s)	103, 214, 439
BspCNI	CTCAG	4 cut(s)	66, 148, 315, 333
BspLI	GGNNCC	3 cut(s)	201, 293, 437
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	395, 450
BssECI	CCNNGG	2 cut(s)	207, 426
BssT1I	CCWWGG	2 cut(s)	207, 426
Bst4CI	ACNGT	1 cut(s)	316
BstDEI	CTNAG	4 cut(s)	53, 135, 323, 341
BstF5I	GGATG	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	32, 144
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	82, 388, 457
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	128, 211, 435
CseI	GACGC	2 cut(s)	49, 316
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	7 cut(s)	49, 65, 253, 294, 299, 413, 425
CviKI_1	RGCY	7 cut(s)	49, 65, 253, 294, 299, 413, 425
DdeI	CTNAG	4 cut(s)	53, 135, 323, 341
Eco130I	CCWWGG	2 cut(s)	207, 426
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	3 cut(s)	128, 211, 435
Eco57I	CTGAAG	2 cut(s)	111, 204
EcoT14I	CCWWGG	2 cut(s)	207, 426
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	207, 426
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	103
FaiI	YATR	7 cut(s)	101, 145, 147, 232, 265, 445, 447
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	296
GsaI	CCCAGC	1 cut(s)	299
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	2 cut(s)	49, 316
Hin1II	CATG	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	72, 121
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	418, 435
Hpy188I	TCNGA	4 cut(s)	279, 311, 342, 373
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	418, 435
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	53, 135, 323, 341
Hsp92II	CATG	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	70, 291, 352
LpnPI	CCDG	9 cut(s)	75, 81, 99, 144, 195, 233, 309, 369, 376
MboII	GAAGA	2 cut(s)	104, 197
MhlI	GDGCHC	2 cut(s)	296, 349
MluCI	AATT	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	30, 39, 213, 311
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	201, 293, 437
NspI	RCATGY	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	72, 121
PflMI	CCANNNNNTGG	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	201, 293, 437
PspPI	GGNCC	3 cut(s)	128, 211, 435
PstNI	CAGNNNCTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	111
Sau96I	GGNCC	3 cut(s)	128, 211, 435
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	296, 349
SetI	ASST	6 cut(s)	67, 154, 205, 213, 255, 415
SinI	GGWCC	3 cut(s)	128, 211, 435
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	103, 214, 439
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	207, 426
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	72, 121
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	82, 395, 457
TspDTI	ATGAA	2 cut(s)	162, 417
TspRI	CASTG	3 cut(s)	82, 395, 457
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	3 cut(s)	128, 211, 435
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.