Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015662

Physical Location & Seq

Genomic Coordinates Reverse (-)

21279550 .. 21281443

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCTCTGCACCATCAGTGTTTGTTACTGCAACACTTCTTGTGTTCATCTATGGTTGCTGCAGTACTGCAAATGCTCAGCTCTCTCCCACCTTCTACTCAAAAACTTGCCCAACTCTTCTAAGCACAGTTCGCACCGCCATGAGTCAAGCTGTTGCTAAAGAGTCTCGCATGGGTGCCTCCATTCTTCGCTTGTTCTTCCACGACTGCTTTGTCAATGGCTGCGACGCTTCGATTCTGTTGGATGACACTGCTTCCTTTACAGGCGAGAAGAATGCGTTCCCAAACCAGAACTCTGCGAGGGGTTTCGAAGTCATTGACACCATTAAAACTCGCGTCGAAGCAGCTTGTAATGCTACAGTTTCTTGTGCGGATATTTTAGCTCTTGCAGCTCGAGATGGAGTTGTCTTGCTTGGAGGAAGCTCGTGGACTGTACCACTAGGCCGCAGAGATGCAAGAACGGCAAGCCAAAGCGCCGCCAACAGCAACCTCCCATCTCCATTCGCAGACCTCGCGGCTCTCATCTCAAGCTTCACCGCCAAAGGCTTAACCGCCAAGGACATGACCGTGCTCTCTGGGGCGCACACTATAGGCCAATCACAGTGCTCTTCCTTCAGGACTCGCATCTACAACGAGACCAACATCGACCCTAGCTTTGCCACCACTCGCAAGTCTACTTGCCCGGCCAGTTCTGGAAATACCAACTTGGCTCCGTTCGACACAACTCCGAACAAATTTGATAATGACTACTACAAGGCGCTTGTGGGACGCCAAGGGCTTCTTCATTCCGATCAGCAGTTGTTTAATAATGGATCTCAGGACGCGTTGGTTAGAACTTACAGTACCAACGTTGCTGCGTTTAATAGGGATTTTGCTGCGGCCATGGTGAAGATGAGTCGGATTAGTCCTCTGCTTGGGGCCAAAGGAGAGATCAGGAAAAACTGCAGACTGGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

320

Amino Acids

34.02

Weight (kDa)

8.93

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 283	2.5e-86	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27610
malus_domestica	MD11G1004100.v1.1
prunus_persica	Prupe.3G115300_v2.0.a1
pyrus_communis	pycom09g15420
rosa_chinensis	RchiOBHm_Chr2g0130331
rosa_laevigata	RLG00000019134
rosa_multiflora	Rmu_sc0001336.1_g000069 Rmu_sc0006388.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113720 Rroxscaffold_2G00114030
rosa_rugosa	Rorug02G0291500
rosa_samantha	Rh2AG343200 Rh2BG351400 Rh2DG369500
rosa_wichuraiana	Rw2G027600 Rw2G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	674
AccII	CGCG	3 cut(s)	336, 515, 824
AciI	CCGC	8 cut(s)	138, 371, 445, 477, 515, 537, 552, 878
AclI	AACGTT	1 cut(s)	849
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	2 cut(s)	684, 879
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	769
AfaI	GTAC	3 cut(s)	67, 435, 844
AfiI	CCNNNNNNNGG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	822
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	8 cut(s)	82, 152, 347, 383, 392, 423, 531, 654
AluI	AGCT	8 cut(s)	82, 152, 347, 383, 392, 423, 531, 654
Alw21I	GWGCWC	2 cut(s)	573, 608
Alw26I	GTCTC	2 cut(s)	171, 629
AlwI	GGATC	1 cut(s)	820
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	6 cut(s)	3, 442, 592, 684, 879, 918
ApeKI	GCWGC	6 cut(s)	60, 222, 344, 389, 854, 875
ApoI	RAATTY	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	3 cut(s)	476, 583, 760
AspS9I	GGNCC	1 cut(s)	918
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	526, 898
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	424
Bbv12I	GWGCWC	2 cut(s)	573, 608
BbvI	GCAGC	6 cut(s)	47, 209, 356, 401, 841, 862
BccI	CCATC	3 cut(s)	22, 392, 502
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	2 cut(s)	171, 629
BfaI	CTAG	2 cut(s)	440, 651
BfmI	CTRYAG	4 cut(s)	61, 357, 588, 943
BfoI	RGCGCY	2 cut(s)	477, 761
BlpI	GCTNAGC	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	918
BmiI	GGNNCC	3 cut(s)	178, 711, 919
BmrFI	CCNGG	1 cut(s)	683
BmsI	GCATC	2 cut(s)	442, 633
Bpu1102I	GCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	683
BsaHI	GRCGYC	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	555, 772, 882
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse1I	ACTGG	2 cut(s)	687, 954
BseDI	CCNNGG	3 cut(s)	555, 772, 882
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMII	CTCAG	2 cut(s)	92, 830
BseNI	ACTGG	2 cut(s)	687, 954
BseXI	GCAGC	6 cut(s)	47, 209, 356, 401, 841, 862
Bsh1236I	CGCG	3 cut(s)	336, 515, 824
BshFI	GGCC	6 cut(s)	5, 444, 594, 686, 881, 920
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	573, 608
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	2 cut(s)	171, 629
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	6 cut(s)	5, 444, 594, 686, 881, 920
Bso31I	GGTCTC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	573, 608
Bsp143I	GATC	3 cut(s)	790, 812, 930
Bsp1720I	GCTNAGC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	8 cut(s)	138, 371, 445, 477, 515, 537, 552, 878
BspANI	GGCC	6 cut(s)	5, 444, 594, 686, 881, 920
BspCNI	CTCAG	2 cut(s)	91, 829
BspFNI	CGCG	3 cut(s)	336, 515, 824
BspLI	GGNNCC	3 cut(s)	178, 711, 919
BspMAI	CTGCAG	2 cut(s)	65, 947
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	613
BspT104I	TTCGAA	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	687, 954
BssECI	CCNNGG	3 cut(s)	555, 772, 882
BssMI	GATC	3 cut(s)	790, 812, 930
BssNI	GRCGYC	1 cut(s)	769
BssSI	CACGAG	1 cut(s)	424
BssT1I	CCWWGG	3 cut(s)	555, 772, 882
Bst2BI	CACGAG	1 cut(s)	424
Bst4CI	ACNGT	6 cut(s)	130, 361, 433, 568, 603, 842
Bst6I	CTCTTC	2 cut(s)	123, 613
BstACI	GRCGYC	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	78, 122, 816
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	3 cut(s)	336, 515, 824
BstH2I	RGCGCY	2 cut(s)	477, 761
BstHHI	GCGC	3 cut(s)	476, 583, 760
BstKTI	GATC	3 cut(s)	793, 815, 933
BstMAI	GTCTC	2 cut(s)	171, 629
BstMBI	GATC	3 cut(s)	790, 812, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	4 cut(s)	61, 357, 588, 943
BstUI	CGCG	3 cut(s)	336, 515, 824
BstV1I	GCAGC	6 cut(s)	47, 209, 356, 401, 841, 862
BstX2I	RGATCY	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	812
BsuRI	GGCC	6 cut(s)	5, 444, 594, 686, 881, 920
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	24, 249, 608
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	3 cut(s)	476, 583, 760
Cfr13I	GGNCC	1 cut(s)	918
CseI	GACGC	4 cut(s)	236, 325, 777, 830
Csp6I	GTAC	3 cut(s)	66, 434, 843
CviAII	CATG	4 cut(s)	142, 172, 562, 883
CviQI	GTAC	3 cut(s)	66, 434, 843
DdeI	CTNAG	3 cut(s)	78, 122, 816
DpnI	GATC	3 cut(s)	792, 814, 932
DpnII	GATC	3 cut(s)	790, 812, 930
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	2 cut(s)	684, 879
Eam1104I	CTCTTC	2 cut(s)	123, 613
EarI	CTCTTC	2 cut(s)	123, 613
Eco130I	CCWWGG	3 cut(s)	555, 772, 882
Eco31I	GGTCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	555, 772, 882
ErhI	CCWWGG	3 cut(s)	555, 772, 882
FaeI	CATG	4 cut(s)	145, 175, 565, 886
FaiI	YATR	6 cut(s)	54, 143, 173, 563, 590, 884
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	4 cut(s)	141, 171, 561, 882
FblI	GTMKAC	1 cut(s)	674
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	2 cut(s)	440, 651
GlaI	GCGC	3 cut(s)	475, 582, 759
HaeII	RGCGCY	2 cut(s)	477, 761
HaeIII	GGCC	6 cut(s)	5, 444, 594, 686, 881, 920
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	4 cut(s)	236, 325, 777, 830
HhaI	GCGC	3 cut(s)	476, 583, 760
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	4 cut(s)	145, 175, 565, 886
Hin6I	GCGC	3 cut(s)	474, 581, 758
HinP1I	GCGC	3 cut(s)	474, 581, 758
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	5 cut(s)	145, 164, 235, 619, 895
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	2 cut(s)	526, 898
Hpy166II	GTNNAC	2 cut(s)	429, 675
Hpy188I	TCNGA	3 cut(s)	729, 790, 900
Hpy188III	TCNNGA	5 cut(s)	395, 616, 693, 818, 934
Hpy8I	GTNNAC	2 cut(s)	429, 675
Hpy99I	CGWCG	2 cut(s)	230, 341
HpyAV	CCTTC	2 cut(s)	103, 622
HpyCH4III	ACNGT	6 cut(s)	130, 361, 433, 568, 603, 842
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	7 cut(s)	11, 32, 63, 71, 389, 455, 945
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
HpyF3I	CTNAG	3 cut(s)	78, 122, 816
HpySE526I	ACGT	1 cut(s)	849
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	4 cut(s)	145, 175, 565, 886
HspAI	GCGC	3 cut(s)	474, 581, 758
Kzo9I	GATC	3 cut(s)	790, 812, 930
LguI	GCTCTTC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	6 cut(s)	47, 209, 356, 401, 841, 862
LweI	GCATC	2 cut(s)	442, 633
MaeI	CTAG	2 cut(s)	440, 651
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	792, 814, 932
MboI	GATC	3 cut(s)	790, 812, 930
MboII	GAAGA	7 cut(s)	110, 179, 190, 283, 600, 773, 901
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	2 cut(s)	573, 608
MluCI	AATT	2 cut(s)	734, 955
MluI	ACGCGT	1 cut(s)	822
MlyI	GAGTC	4 cut(s)	154, 173, 613, 904
MmeI	TCCRAC	2 cut(s)	222, 878
MnlI	CCTC	7 cut(s)	16, 190, 294, 410, 500, 521, 918
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	5 cut(s)	327, 548, 804, 861, 958
MslI	CAYNNNNRTG	2 cut(s)	140, 566
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	683
Mva1269I	GAATGC	1 cut(s)	280
MvnI	CGCG	3 cut(s)	336, 515, 824
MwoI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
NciI	CCSGG	1 cut(s)	683
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	790, 812, 930
NlaIII	CATG	4 cut(s)	145, 175, 565, 886
NlaIV	GGNNCC	3 cut(s)	178, 711, 919
NspV	TTCGAA	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	235
PleI	GAGTC	4 cut(s)	153, 172, 613, 903
PpsI	GAGTC	4 cut(s)	153, 172, 613, 903
Psp1406I	AACGTT	1 cut(s)	849
PspN4I	GGNNCC	3 cut(s)	178, 711, 919
PspPI	GGNCC	1 cut(s)	918
PsrI	GAACNNNNNNTAC	2 cut(s)	826, 858
PstI	CTGCAG	2 cut(s)	65, 947
PsuI	RGATCY	1 cut(s)	812
RsaI	GTAC	3 cut(s)	67, 435, 844
RsaNI	GTAC	3 cut(s)	66, 434, 843
RseI	CAYNNNNRTG	2 cut(s)	140, 566
SapI	GCTCTTC	1 cut(s)	613
SaqAI	TTAA	5 cut(s)	327, 548, 804, 861, 958
Sau3AI	GATC	3 cut(s)	790, 812, 930
Sau96I	GGNCC	1 cut(s)	918
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	4 cut(s)	154, 173, 613, 904
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	2 cut(s)	573, 608
SfaNI	GCATC	2 cut(s)	442, 633
SfcI	CTRYAG	4 cut(s)	61, 357, 588, 943
Sfr274I	CTCGAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	140, 566
SmlI	CTYRAG	2 cut(s)	393, 526
SmoI	CTYRAG	2 cut(s)	393, 526
Sse9I	AATT	2 cut(s)	734, 955
SsiI	CCGC	8 cut(s)	138, 371, 445, 477, 515, 537, 552, 878
SspMI	CTAG	2 cut(s)	440, 651
StyD4I	CCNGG	1 cut(s)	681
StyI	CCWWGG	3 cut(s)	555, 772, 882
TaaI	ACNGT	6 cut(s)	130, 361, 433, 568, 603, 842
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	6 cut(s)	233, 309, 339, 394, 645, 717
TasI	AATT	2 cut(s)	734, 955
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	4 cut(s)	447, 479, 518, 881
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	5 cut(s)	327, 548, 804, 861, 958
Tru9I	TTAA	5 cut(s)	327, 548, 804, 861, 958
TscAI	CASTG	3 cut(s)	24, 256, 608
TseI	GCWGC	6 cut(s)	60, 222, 344, 389, 854, 875
TspDTI	ATGAA	2 cut(s)	37, 773
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	3 cut(s)	24, 256, 608
XapI	RAATTY	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	440, 651
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.