Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015662

Physical Location & Seq

Genomic Coordinates Reverse (-)

9735423 .. 9738156

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCACAATCTTACTCTATATATAGACTGCTTCTTCAATCCTTCTCCTTACACCACAAAGCCCAGCTTCATCTCTTCAGCTCTCATATTCATGAAGCTTGCAATGGCCTCTCTGTCCTACTCCTTCATTGTTGTTACACTCTTCATCATCCCTTTTTTTGGTTGTGGTGCCAATGCACAACTCTCTCCCAACTTCTATGCAAGAACCTGCCCAAGTCTTCCGACCATCGTTCGCAATGCTATGAGTCAGGCTGTTACTAGGGAGGCTCGGATGGGTGCCTCGATCCTTCGCTTATTCTTCCACGACTGCTTTGTAAATGGTTGCGACGCTTCCATACTATTGGATGACACGGCCACCTTCACCGGTGAAAAGAATGCATTCCCAAACCAGAACTCAGTCAGGGGATTTGAAGTCATTGACACCATCAAAACCCGAGTGGAAGCTGCTTGTAATGCTACTGTATCTTGTGCAGATATTTTAGCACTCGCAACCCGGGATGGAGTTGTCTTGCTTGGAGGAACCTCATGGACGGTAGCCCTAGGCCGAAGAGATGCAAGAACTGCAAGCCAAAGCGATGCCAACAACCAACTCCCCTCCCCCTTCGCCAACCTCGCAACCCTAATCTCGAGTTTCGCAGCGAAAGGCTTAACCGCCAGCGATCTGACCGTGCTCTCCGGTGGCCACACAATAGGCCAGTCTCAGTGTCTTCTATTCAAAACCCGCATATACAACGAGACCAACATTGACCCCAGCTTTGCCACCACTCGTAAGGCTACATGTCCGGCTTCCGGCGGCGATACAAATCTTGCTCCCTTCGATATAACCCCGACTCGTTTCGATAATAATTACTACAAGGCCCTTGTGGCTCGTCGTGGTCTTCTTCATTCCGATCAGGAGCTCTTCAACAGCGGGAGTCAGGATGCCTTGGTTAGAACGTATAGTAACAACGCCGCCGCGTTTTCAAGAGATTTTGCTGCAGCCATGGCGAAGATGAGCGCTATTAGTCCTCTAACTGGGACAAATGGAGAGATCAGGAAGAATTGCAGATTAGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

353

Amino Acids

37.96

Weight (kDa)

8.67

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27610
malus_domestica	MD11G1004100.v1.1
prunus_persica	Prupe.3G115300_v2.0.a1
pyrus_communis	pycom09g15420
rosa_chinensis	RchiOBHm_Chr2g0130331
rosa_laevigata	RLG00000019134
rosa_multiflora	Rmu_sc0001336.1_g000069 Rmu_sc0006388.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113720 Rroxscaffold_2G00114030
rosa_rugosa	Rorug02G0291500
rosa_samantha	Rh2AG343200 Rh2BG351400 Rh2DG369500
rosa_wichuraiana	Rw2G027600 Rw2G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	167, 275
AccII	CGCG	1 cut(s)	956
AciI	CCGC	6 cut(s)	651, 721, 792, 909, 951, 954
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	2 cut(s)	351, 679
AcuI	CTGAAG	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	997
AfiI	CCNNNNNNNGG	3 cut(s)	158, 788, 1013
AflIII	ACRYGT	1 cut(s)	776
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	37, 410, 715, 904, 963
AluBI	AGCT	6 cut(s)	66, 80, 97, 443, 753, 898
AluI	AGCT	6 cut(s)	66, 80, 97, 443, 753, 898
Alw21I	GWGCWC	2 cut(s)	672, 900
Alw26I	GTCTC	2 cut(s)	702, 728
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	3 cut(s)	432, 492, 625
Aor51HI	AGCGCT	1 cut(s)	997
AoxI	GGCC	6 cut(s)	105, 351, 541, 679, 691, 855
ApeKI	GCWGC	4 cut(s)	443, 635, 974, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AsiGI	ACCGGT	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	1 cut(s)	856
AsuC2I	CCSGG	2 cut(s)	493, 494
AsuHPI	GGTGA	2 cut(s)	352, 377
AvaI	CYCGRG	3 cut(s)	432, 492, 625
AvrII	CCTAGG	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	2 cut(s)	167, 275
BanII	GRGCYC	1 cut(s)	900
BbsI	GAAGAC	3 cut(s)	209, 698, 869
Bbv12I	GWGCWC	2 cut(s)	672, 900
BbvI	GCAGC	4 cut(s)	430, 647, 961, 989
BccI	CCATC	4 cut(s)	233, 265, 431, 491
BceAI	ACGGC	1 cut(s)	366
BcnI	CCSGG	2 cut(s)	493, 494
BcoDI	GTCTC	2 cut(s)	702, 728
BfaI	CTAG	2 cut(s)	258, 539
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	1 cut(s)	999
BfuAI	ACCTGC	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	863
BisI	GCNGC	7 cut(s)	444, 636, 793, 951, 954, 975, 978
BlnI	CCTAGG	1 cut(s)	538
BlsI	GCNGC	7 cut(s)	445, 637, 794, 952, 955, 976, 979
Bme1390I	CCNGG	2 cut(s)	493, 494
BmeT110I	CYCGRG	3 cut(s)	432, 492, 625
BmgT120I	GGNCC	1 cut(s)	856
BmiI	GGNNCC	3 cut(s)	169, 277, 520
BmrFI	CCNGG	2 cut(s)	493, 494
BmrI	ACTGGG	1 cut(s)	1023
BmsI	GCATC	3 cut(s)	541, 565, 910
BmuI	ACTGGG	1 cut(s)	1023
BpiI	GAAGAC	3 cut(s)	209, 698, 869
BpuMI	CCSGG	2 cut(s)	493, 494
BsaBI	GATNNNNATC	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	4 cut(s)	492, 538, 924, 981
BsaWI	WCCGGW	2 cut(s)	362, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 788, 1013
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	694, 1018
Bse3DI	GCAATG	2 cut(s)	108, 241
Bse8I	GATNNNNATC	1 cut(s)	801
BseDI	CCNNGG	4 cut(s)	492, 538, 924, 981
BseGI	GGATG	5 cut(s)	147, 276, 349, 502, 925
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	158, 788, 1013
BseMI	GCAATG	2 cut(s)	108, 241
BseMII	CTCAG	2 cut(s)	408, 713
BseNI	ACTGG	2 cut(s)	694, 1018
BseXI	GCAGC	4 cut(s)	430, 647, 961, 989
BseYI	CCCAGC	2 cut(s)	62, 749
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	956
BshFI	GGCC	6 cut(s)	107, 353, 543, 681, 693, 857
BshNI	GGYRCC	2 cut(s)	167, 275
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	672, 900
BsiHKCI	CYCGRG	3 cut(s)	432, 492, 625
BsiSI	CCGG	5 cut(s)	363, 493, 675, 782, 789
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	3 cut(s)	158, 788, 1013
BsmAI	GTCTC	2 cut(s)	702, 728
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	2 cut(s)	377, 379
BsnI	GGCC	6 cut(s)	107, 353, 543, 681, 693, 857
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	3 cut(s)	432, 492, 625
Bsp1286I	GDGCHC	2 cut(s)	672, 900
Bsp143I	GATC	4 cut(s)	282, 658, 889, 1029
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	6 cut(s)	651, 721, 792, 909, 951, 954
BspANI	GGCC	6 cut(s)	107, 353, 543, 681, 693, 857
BspCNI	CTCAG	2 cut(s)	407, 712
BspFNI	CGCG	1 cut(s)	956
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	169, 277, 520
BspMAI	CTGCAG	1 cut(s)	979
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	905
BspT107I	GGYRCC	2 cut(s)	167, 275
BspTNI	GGTCTC	1 cut(s)	728
BsrDI	GCAATG	2 cut(s)	108, 241
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	694, 1018
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	4 cut(s)	492, 538, 924, 981
BssMI	GATC	4 cut(s)	282, 658, 889, 1029
BssT1I	CCWWGG	3 cut(s)	538, 924, 981
Bst4CI	ACNGT	3 cut(s)	460, 532, 667
Bst6I	CTCTTC	4 cut(s)	79, 146, 541, 905
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	99, 565, 655
BstDEI	CTNAG	2 cut(s)	394, 699
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	5 cut(s)	147, 276, 349, 502, 925
BstFNI	CGCG	1 cut(s)	956
BstH2I	RGCGCY	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	4 cut(s)	285, 661, 892, 1032
BstMAI	GTCTC	2 cut(s)	702, 728
BstMBI	GATC	4 cut(s)	282, 658, 889, 1029
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 560, 611, 863, 983
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	2 cut(s)	491, 492
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	956
BstV1I	GCAGC	4 cut(s)	430, 647, 961, 989
BstV2I	GAAGAC	3 cut(s)	209, 698, 869
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	6 cut(s)	107, 353, 543, 681, 693, 857
BtgI	CCRYGG	1 cut(s)	981
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	5 cut(s)	147, 276, 349, 502, 925
BtsIMutI	CAGTG	1 cut(s)	707
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	99, 565, 655
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	998
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	856
Cfr9I	CCCGGG	1 cut(s)	492
CseI	GACGC	1 cut(s)	335
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	4 cut(s)	91, 525, 777, 982
DdeI	CTNAG	2 cut(s)	394, 699
DpnI	GATC	4 cut(s)	284, 660, 891, 1031
DpnII	GATC	4 cut(s)	282, 658, 889, 1029
EaeI	YGGCCR	2 cut(s)	351, 679
Eam1104I	CTCTTC	4 cut(s)	79, 146, 541, 905
EarI	CTCTTC	4 cut(s)	79, 146, 541, 905
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	3 cut(s)	538, 924, 981
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	728
Eco47III	AGCGCT	1 cut(s)	997
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	3 cut(s)	432, 492, 625
EcoICRI	GAGCTC	1 cut(s)	898
EcoO109I	RGGNCCY	1 cut(s)	856
EcoT14I	CCWWGG	3 cut(s)	538, 924, 981
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	3 cut(s)	538, 924, 981
FaeI	CATG	4 cut(s)	94, 528, 780, 985
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	4 cut(s)	90, 524, 776, 981
FauI	CCCGC	2 cut(s)	728, 902
Fnu4HI	GCNGC	7 cut(s)	444, 636, 793, 951, 954, 975, 978
FokI	GGATG	5 cut(s)	134, 283, 356, 509, 932
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	7 cut(s)	444, 636, 793, 951, 954, 975, 978
FspBI	CTAG	2 cut(s)	258, 539
GlaI	GCGC	1 cut(s)	997
GluI	GCNGC	7 cut(s)	444, 636, 793, 951, 954, 975, 978
GsaI	CCCAGC	2 cut(s)	66, 753
HaeII	RGCGCY	1 cut(s)	999
HaeIII	GGCC	6 cut(s)	107, 353, 543, 681, 693, 857
HapII	CCGG	5 cut(s)	363, 493, 675, 782, 789
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	998
Hin1II	CATG	4 cut(s)	94, 528, 780, 985
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	244, 829, 913
HpaII	CCGG	5 cut(s)	363, 493, 675, 782, 789
HphI	GGTGA	2 cut(s)	352, 377
Hpy166II	GTNNAC	1 cut(s)	1054
Hpy188I	TCNGA	4 cut(s)	222, 270, 663, 889
Hpy188III	TCNNGA	6 cut(s)	91, 625, 893, 917, 963, 1033
Hpy8I	GTNNAC	1 cut(s)	1054
Hpy99I	CGWCG	2 cut(s)	329, 873
HpyAV	CCTTC	6 cut(s)	51, 133, 296, 367, 610, 823
HpyCH4III	ACNGT	3 cut(s)	460, 532, 667
HpyCH4IV	ACGT	1 cut(s)	935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 560, 611, 863, 983
HpyF3I	CTNAG	2 cut(s)	394, 699
HpySE526I	ACGT	1 cut(s)	935
Hsp92II	CATG	4 cut(s)	94, 528, 780, 985
HspAI	GCGC	1 cut(s)	996
Kzo9I	GATC	4 cut(s)	282, 658, 889, 1029
LguI	GCTCTTC	1 cut(s)	905
LmnI	GCTCC	2 cut(s)	814, 895
Lsp1109I	GCAGC	4 cut(s)	430, 647, 961, 989
LweI	GCATC	3 cut(s)	541, 565, 910
MaeI	CTAG	2 cut(s)	258, 539
MaeII	ACGT	1 cut(s)	935
MaeIII	GTNAC	3 cut(s)	133, 253, 941
MalI	GATC	4 cut(s)	284, 660, 891, 1031
MboI	GATC	4 cut(s)	282, 658, 889, 1029
MhlI	GDGCHC	2 cut(s)	672, 900
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	2 cut(s)	844, 1039
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	3 cut(s)	253, 823, 922
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	8 cut(s)	118, 256, 289, 509, 532, 604, 620, 1017
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	909
MspI	CCGG	5 cut(s)	363, 493, 675, 782, 789
MspR9I	CCNGG	2 cut(s)	493, 494
Mva1269I	GAATGC	2 cut(s)	377, 379
MvnI	CGCG	1 cut(s)	956
MwoI	GCNNNNNNNGC	5 cut(s)	452, 560, 611, 863, 983
NciI	CCSGG	2 cut(s)	493, 494
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	4 cut(s)	282, 658, 889, 1029
NlaIII	CATG	4 cut(s)	94, 528, 780, 985
NlaIV	GGNNCC	3 cut(s)	169, 277, 520
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	625
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	905
PctI	GAATGC	2 cut(s)	377, 379
PdmI	GAANNNNTTC	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	7 cut(s)	445, 637, 794, 952, 955, 976, 979
PleI	GAGTC	3 cut(s)	252, 823, 921
PpsI	GAGTC	3 cut(s)	252, 823, 921
PscI	ACATGT	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	900
PspFI	CCCAGC	2 cut(s)	62, 749
PspN4I	GGNNCC	3 cut(s)	169, 277, 520
PspPI	GGNCC	1 cut(s)	856
PstI	CTGCAG	1 cut(s)	979
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	905
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	7 cut(s)	444, 636, 793, 951, 954, 975, 978
Sau3AI	GATC	4 cut(s)	282, 658, 889, 1029
Sau96I	GGNCC	1 cut(s)	856
SchI	GAGTC	3 cut(s)	253, 823, 922
ScrFI	CCNGG	2 cut(s)	493, 494
SduI	GDGCHC	2 cut(s)	672, 900
SfaNI	GCATC	3 cut(s)	541, 565, 910
SfcI	CTRYAG	1 cut(s)	975
Sfr274I	CTCGAG	1 cut(s)	625
SgrAI	CRCCGGYG	1 cut(s)	362
SlaI	CTCGAG	1 cut(s)	625
SmaI	CCCGGG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	2 cut(s)	844, 1039
SsiI	CCGC	6 cut(s)	651, 721, 792, 909, 951, 954
SspMI	CTAG	2 cut(s)	258, 539
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	491, 492
StyI	CCWWGG	3 cut(s)	538, 924, 981
TaaI	ACNGT	3 cut(s)	460, 532, 667
TaiI	ACGT	1 cut(s)	938
TaqI	TCGA	4 cut(s)	281, 626, 816, 837
TasI	AATT	2 cut(s)	844, 1039
TauI	GCSGC	3 cut(s)	795, 953, 956
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	1 cut(s)	707
TseI	GCWGC	4 cut(s)	443, 635, 974, 977
TspDTI	ATGAA	6 cut(s)	58, 79, 107, 115, 133, 872
TspMI	CCCGGG	1 cut(s)	492
TspRI	CASTG	1 cut(s)	707
XceI	RCATGY	1 cut(s)	780
XhoI	CTCGAG	1 cut(s)	625
XmaI	CCCGGG	1 cut(s)	492
XmaJI	CCTAGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	258, 539
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.