Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015662

Physical Location & Seq

Genomic Coordinates Reverse (-)

15285863 .. 15287912

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCAATGCACAATTTCTTACTCTATATATAAAGTGCGTCCTCAAACCACCTTCTCACACCGCAAAGCAAGCTGCTTCATATATTCAGCTCTAATATTGAAGCTCATATCATATAATATAATGGCGTCTCTATCCCATTTCCTCATCATTACAGTACTCTTCATCGTCCCTTTCTTTAGCTGTTGTGTCAATGCACAGCTCTCGGCCAATTTTTATGCAAGAACTTGCCCAACTCTTCCAACCATCGTTCGCAATGCTATGAGGCAAGCTGTTTCTAGGGAGGGTCGGATGGCTGCCTCTATCCTTCGTTTATTTTTCCACGACTGCTTCGTAAATGGTTGCGACGCTTCCATACTGTTGGACGACACGACCACCTTCACAGGCGAAAAGAATGCATTCCCAAACCGGAACTCAGCTAGGGGCTTTGAAGTCATTGACACCATTAAAACTCGCGTTGAAGCTGCTTGTAATGCTACTGTGTCATGTGCAGATATTTTAGCACTTGCAGCAAGAGACGGTGTTGTCTTGCTTGGAGGAACCTCATGGACGGTAGCCCTAGGCCGAAGAGACGCCAGAACCGCAAGCCAAACTGACGCCAACAACCAGCTCCCCTCCCCATTCGCTAACCTCGCAACCCTAATCTCAAACTTTGCAGCTAAAGGTTTAACCGCCACAGACATGACCGTGCTCTCTGGCGGCCACACATTAGGGCAGTCTCAGTGTTCATCCTTCAAAACCCGCATATACAACGAGACCAACATCGACCCCGCCTTTGCAACTACTCGTAAGCGTACTTGTCCAGCTTCCGGTGGCGATACGAATCTAGCTCCTTTCGATATAACTCCGAATCGCTTTGATAATGAATACTACAAGGCCCTTGTGGCTCGCCGTGGTCTTCTCCATTCGGACCAGGAACTCTTCAATGGTGGGAGTCAGGATGCCTTGGTTAGAACTTACAGCAACAACGTTGCGGCTTTTACAAGAGATTTTGCTGCAGCCATGGTGAAGATGAGCGCTATTAGTCCTCTAACAGGGACAAATGGAGAGATCAGGAAAAATTGCAGGCTAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

359

Amino Acids

39.04

Weight (kDa)

9.19

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27610
malus_domestica	MD11G1004100.v1.1
prunus_persica	Prupe.3G115300_v2.0.a1
pyrus_communis	pycom09g15420
rosa_chinensis	RchiOBHm_Chr2g0130331
rosa_laevigata	RLG00000019134
rosa_multiflora	Rmu_sc0001336.1_g000069 Rmu_sc0006388.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113720 Rroxscaffold_2G00114030
rosa_rugosa	Rorug02G0291500
rosa_samantha	Rh2AG343200 Rh2BG351400 Rh2DG369500
rosa_wichuraiana	Rw2G027600 Rw2G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccII	CGCG	1 cut(s)	453
AciI	CCGC	7 cut(s)	61, 579, 669, 696, 739, 768, 971
AclI	AACGTT	1 cut(s)	966
AcoI	YGGCCR	2 cut(s)	204, 697
AcyI	GRCGYC	3 cut(s)	125, 570, 594
AfaI	GTAC	2 cut(s)	156, 793
AfeI	AGCGCT	1 cut(s)	1015
AfiI	CCNNNNNNNGG	2 cut(s)	806, 1031
AgsI	TTSAA	5 cut(s)	100, 428, 458, 733, 922
AjnI	CCWGG	1 cut(s)	909
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	5 cut(s)	132, 507, 561, 720, 746
Aor51HI	AGCGCT	1 cut(s)	1015
AoxI	GGCC	4 cut(s)	204, 559, 697, 873
ApeKI	GCWGC	7 cut(s)	72, 293, 461, 506, 653, 992, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
Asp700I	GAANNNNTTC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	1016
AspS9I	GGNCC	2 cut(s)	874, 907
AsuHPI	GGTGA	1 cut(s)	1015
AvaII	GGWCC	1 cut(s)	907
AvrII	CCTAGG	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	7 cut(s)	59, 280, 448, 518, 665, 979, 1007
BccI	CCATC	2 cut(s)	251, 283
BceAI	ACGGC	1 cut(s)	873
BcgI	CGANNNNNNTGC	4 cut(s)	183, 217, 374, 408
BciT130I	CCWGG	1 cut(s)	911
BcoDI	GTCTC	5 cut(s)	132, 507, 561, 720, 746
BfaI	CTAG	5 cut(s)	276, 417, 557, 824, 1067
BfmI	CTRYAG	1 cut(s)	993
BfoI	RGCGCY	1 cut(s)	1017
BglI	GCCNNNNNGGC	1 cut(s)	881
BisI	GCNGC	9 cut(s)	73, 294, 462, 507, 654, 697, 972, 993, 996
BlnI	CCTAGG	1 cut(s)	556
BlsI	GCNGC	9 cut(s)	74, 295, 463, 508, 655, 698, 973, 994, 997
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	1 cut(s)	907
BmgT120I	GGNCC	2 cut(s)	874, 907
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	1 cut(s)	928
BpiI	GAAGAC	1 cut(s)	887
BsaBI	GATNNNNATC	1 cut(s)	819
BsaHI	GRCGYC	3 cut(s)	125, 570, 594
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	4 cut(s)	556, 889, 942, 999
BsaWI	WCCGGW	2 cut(s)	405, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	806, 1031
Bse3DI	GCAATG	2 cut(s)	11, 259
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	4 cut(s)	556, 889, 942, 999
BseGI	GGATG	3 cut(s)	294, 725, 943
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	2 cut(s)	806, 1031
BseMI	GCAATG	2 cut(s)	11, 259
BseMII	CTCAG	2 cut(s)	426, 731
BseXI	GCAGC	7 cut(s)	59, 280, 448, 518, 665, 979, 1007
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	206, 561, 699, 875
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	2 cut(s)	406, 807
BslFI	GGGAC	2 cut(s)	152, 1048
BslI	CCNNNNNNNGG	2 cut(s)	806, 1031
BsmAI	GTCTC	5 cut(s)	132, 507, 561, 720, 746
BsmBI	CGTCTC	3 cut(s)	132, 507, 561
BsmFI	GGGAC	2 cut(s)	152, 1048
BsmI	GAATGC	2 cut(s)	395, 397
BsnI	GGCC	4 cut(s)	206, 561, 699, 875
Bso31I	GGTCTC	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	1 cut(s)	1047
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	7 cut(s)	61, 579, 669, 696, 739, 768, 971
BspANI	GGCC	4 cut(s)	206, 561, 699, 875
BspCNI	CTCAG	2 cut(s)	425, 730
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	11, 259
BssECI	CCNNGG	4 cut(s)	556, 889, 942, 999
BssMI	GATC	1 cut(s)	1047
BssNI	GRCGYC	3 cut(s)	125, 570, 594
BssT1I	CCWWGG	3 cut(s)	556, 942, 999
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	6 cut(s)	154, 357, 478, 518, 550, 685
Bst6I	CTCTTC	4 cut(s)	164, 240, 559, 923
BstACI	GRCGYC	3 cut(s)	125, 570, 594
BstC8I	GCNNGC	5 cut(s)	70, 267, 583, 886, 1064
BstDEI	CTNAG	2 cut(s)	412, 717
BstDSI	CCRYGG	2 cut(s)	889, 999
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstF5I	GGATG	3 cut(s)	294, 725, 943
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	1 cut(s)	1016
BstKTI	GATC	1 cut(s)	1050
BstMAI	GTCTC	5 cut(s)	132, 507, 561, 720, 746
BstMBI	GATC	1 cut(s)	1047
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 470, 506, 578, 629, 881
BstNI	CCWGG	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	909
BstSFI	CTRYAG	1 cut(s)	993
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	7 cut(s)	59, 280, 448, 518, 665, 979, 1007
BstV2I	GAAGAC	1 cut(s)	887
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	206, 561, 699, 875
BtgI	CCRYGG	2 cut(s)	889, 999
BtsCI	GGATG	3 cut(s)	294, 725, 943
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	5 cut(s)	70, 267, 583, 886, 1064
CfoI	GCGC	1 cut(s)	1016
Cfr13I	GGNCC	2 cut(s)	874, 907
CseI	GACGC	5 cut(s)	26, 114, 353, 578, 602
Csp6I	GTAC	2 cut(s)	155, 792
CviAII	CATG	4 cut(s)	483, 543, 679, 1000
CviQI	GTAC	2 cut(s)	155, 792
DdeI	CTNAG	2 cut(s)	412, 717
DpnI	GATC	1 cut(s)	1049
DpnII	GATC	1 cut(s)	1047
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	2 cut(s)	204, 697
Eam1104I	CTCTTC	4 cut(s)	164, 240, 559, 923
EarI	CTCTTC	4 cut(s)	164, 240, 559, 923
Eco130I	CCWWGG	3 cut(s)	556, 942, 999
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	907
Eco47III	AGCGCT	1 cut(s)	1015
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	909
EcoT14I	CCWWGG	3 cut(s)	556, 942, 999
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	3 cut(s)	556, 942, 999
Esp3I	CGTCTC	3 cut(s)	132, 507, 561
FaeI	CATG	4 cut(s)	486, 546, 682, 1003
FaqI	GGGAC	2 cut(s)	152, 1048
FatI	CATG	4 cut(s)	482, 542, 678, 999
FauI	CCCGC	2 cut(s)	746, 775
Fnu4HI	GCNGC	9 cut(s)	73, 294, 462, 507, 654, 697, 972, 993, 996
FokI	GGATG	3 cut(s)	301, 712, 950
Fsp4HI	GCNGC	9 cut(s)	73, 294, 462, 507, 654, 697, 972, 993, 996
FspBI	CTAG	5 cut(s)	276, 417, 557, 824, 1067
GlaI	GCGC	1 cut(s)	1015
GluI	GCNGC	9 cut(s)	73, 294, 462, 507, 654, 697, 972, 993, 996
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	4 cut(s)	206, 561, 699, 875
HapII	CCGG	2 cut(s)	406, 807
HgaI	GACGC	5 cut(s)	26, 114, 353, 578, 602
HhaI	GCGC	1 cut(s)	1016
Hin1I	GRCGYC	3 cut(s)	125, 570, 594
Hin1II	CATG	4 cut(s)	486, 546, 682, 1003
Hin6I	GCGC	1 cut(s)	1014
HinP1I	GCGC	1 cut(s)	1014
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	3 cut(s)	820, 847, 931
HpaII	CCGG	2 cut(s)	406, 807
HphI	GGTGA	1 cut(s)	1015
Hpy166II	GTNNAC	1 cut(s)	1072
Hpy188I	TCNGA	3 cut(s)	288, 846, 907
Hpy188III	TCNNGA	2 cut(s)	935, 1051
Hpy8I	GTNNAC	1 cut(s)	1072
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	61, 314, 385, 739
HpyCH4III	ACNGT	6 cut(s)	154, 357, 478, 518, 550, 685
HpyCH4IV	ACGT	1 cut(s)	966
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 470, 506, 578, 629, 881
HpyF3I	CTNAG	2 cut(s)	412, 717
HpySE526I	ACGT	1 cut(s)	966
Hsp92I	GRCGYC	3 cut(s)	125, 570, 594
Hsp92II	CATG	4 cut(s)	486, 546, 682, 1003
HspAI	GCGC	1 cut(s)	1014
Kzo9I	GATC	1 cut(s)	1047
LmnI	GCTCC	2 cut(s)	612, 832
Lsp1109I	GCAGC	7 cut(s)	59, 280, 448, 518, 665, 979, 1007
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	5 cut(s)	276, 417, 557, 824, 1067
MaeII	ACGT	1 cut(s)	966
MalI	GATC	1 cut(s)	1049
MboI	GATC	1 cut(s)	1047
MboII	GAAGA	6 cut(s)	151, 227, 576, 887, 910, 1018
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	3 cut(s)	12, 208, 1057
MlyI	GAGTC	1 cut(s)	940
MmeI	TCCRAC	3 cut(s)	263, 266, 339
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	444, 665
MslI	CAYNNNNRTG	2 cut(s)	677, 683
MspI	CCGG	2 cut(s)	406, 807
MspR9I	CCNGG	1 cut(s)	911
Mva1269I	GAATGC	2 cut(s)	395, 397
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	6 cut(s)	69, 470, 506, 578, 629, 881
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	1 cut(s)	1047
NlaIII	CATG	4 cut(s)	486, 546, 682, 1003
NlaIV	GGNNCC	1 cut(s)	538
NmeAIII	GCCGAG	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	2 cut(s)	395, 397
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	820, 847
PkrI	GCNGC	9 cut(s)	74, 295, 463, 508, 655, 698, 973, 994, 997
PleI	GAGTC	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	939
Psp1406I	AACGTT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	874, 907
PstI	CTGCAG	1 cut(s)	997
RsaI	GTAC	2 cut(s)	156, 793
RsaNI	GTAC	2 cut(s)	155, 792
RseI	CAYNNNNRTG	2 cut(s)	677, 683
SaqAI	TTAA	2 cut(s)	444, 665
SatI	GCNGC	9 cut(s)	73, 294, 462, 507, 654, 697, 972, 993, 996
Sau3AI	GATC	1 cut(s)	1047
Sau96I	GGNCC	2 cut(s)	874, 907
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	940
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	928
SfcI	CTRYAG	1 cut(s)	993
SinI	GGWCC	1 cut(s)	907
SmiMI	CAYNNNNRTG	2 cut(s)	677, 683
Sse9I	AATT	3 cut(s)	12, 208, 1057
SsiI	CCGC	7 cut(s)	61, 579, 669, 696, 739, 768, 971
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	5 cut(s)	276, 417, 557, 824, 1067
StyD4I	CCNGG	1 cut(s)	909
StyI	CCWWGG	3 cut(s)	556, 942, 999
TaaI	ACNGT	6 cut(s)	154, 357, 478, 518, 550, 685
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	2 cut(s)	762, 834
TasI	AATT	3 cut(s)	12, 208, 1057
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	2 cut(s)	699, 974
TfiI	GAWTC	2 cut(s)	820, 847
Tru1I	TTAA	2 cut(s)	444, 665
Tru9I	TTAA	2 cut(s)	444, 665
TscAI	CASTG	1 cut(s)	725
TseI	GCWGC	7 cut(s)	72, 293, 461, 506, 653, 992, 995
TspDTI	ATGAA	4 cut(s)	67, 151, 714, 876
TspRI	CASTG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	907
XagI	CCTNNNNNAGG	1 cut(s)	1029
XmaJI	CCTAGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	5 cut(s)	276, 417, 557, 824, 1067
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.